exd2 (LOC107687943,LOC107753346,LOC107758720,LOC107687840)


Basic Information

Item Value
gene id exd2
gene name LOC107687943,LOC107753346,LOC107758720,LOC107687840
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 18674126 ~ 18684463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263543.1
AGCGTGTCCTGCGCGCGCGGAGGAGATAAACCCGCAGAAGAAGACGCGCTGCAGCTGTTCATTATAAGCGTGTGCGAGAGCGTCCACAGTAGTGTCCACTTGTTTTTCTGACATCTATTGAGTTTCCAGCGTGGAGTTGGAGCGGCTGCAGCGATGTCCAAGCAGAGCACGTTCACCGCGGCTCTGGCCACTATGTTAGGAGCCACCCTCGGCGGCCTGTTCCTGTGGCGCAGCATCCGCACGCAGAAGAGAAAGGCCCTCAAGGGCCCCGCTTCAGCCGAGCCCGTGCAAGCCCAGCTCGAAGCAGACGCCCCGTCCTGCAGCCCGCGAGACCCGAGCCCCGAACCCGGAGCTCTGCGAGCGTGTTCGCTGCTGGAGGTGCCGCCCGTGATCGTCAGCTCCCCGGAGGAGTGGGACGCGCTCTGGCCGGGCTTCCAGAAGGAGCTCTCCGTCCATCCGGTTCTGGGACTTGACTGTGAATGGGTAAAAAGCATGCGCGTGTCCGTCAAAGGCAAGGCCTCTGCGGTTTCCCTGCTCCAGCTGGCCACCTTCTCCGGCCGCTGTGTGCTGGTCAGGCTGCTGGCGTTTCGTGACGCGCAGCTTCCTCTCCCCGGGGGCCTCGTCGGGGTGCTCTCTGACCCCCGCGTGCTGAAGGTCGGGGTGGGATGTTACGAGGATGGCAAGCGGCTGACTCACGATCACGGCCTGGCTCTGAGTTGCACCGTGGATCTGCGCTACCTGGCCCTCAGACAGAGGCAAGCGGTGCTGAATAACGGCTTGAGTTTGAAGTCTCTGGCCGCGGATCTGCTGAACGTCACGCTGGACAAGTCTCTGGAGCTGCGCTGCAGCGACTGGGAGGCGGATGTGTTGAGCCAAGAGCAGATGGCCTACGCAGCACATGATGCCCAGATCTCGGTTGCCCTGTTCTTTCACCTGCTGGGGATGGACACCGAGCCCCAGCTCCCCGCCGAGGGTGAAAGCACGTTCGTCCGGCTGGCTTCATGCTGCCAGGGGCTGGTGGACGTTCCCTTCAGGGGGCGCTATAACGGAGAGGGGGAAGAGGGGGAGAGGAGGAGGCGGAGCCGAAGGTCCACAGTGGAGAGTCCCGAGTCTGGAGACCAGCAAGTTCCAGACCCGCGGAGGAACAAGCGCAAACCGCTGGGAGTCGGATACTCGGCCAGGAAATCACCCCTTTATGACAATTGTTTCCTTCATGCTCCCGACGGCCAGCCGCTCTGCACGTGTGACAAGAAGAAAGCAAAATGGTACCTGGAGAAGGGTATAGGAGAATTGGTCAGCGAGGATCCCTTCGTGGTCCGGCTGCTGTTTGAGCCGTCAGGCCGCCCGGACTCCCAGAAAGACTACTACCTCACAGCCAAAGAGAacgtgtgtgtggtgtgtgggAAAGCCGACTCTTACATCAGGAAGAACATCGTCCCACACGAGTACAGACGCCACTTCCCAGCTGAGATGAAGGACCACAACTCGCACGACATCCTGCTGCTGTGCACTTCCTGTCACGCGGCCTCGAACGTGCACGACGGGGTCCTGAAGCAGCGGCTGGCCGAGGAGCACTCTGCCCCGCAGGGCTGTGAGGAGGGCATCCGGCTGCTGGAGGACGCAGACCGCCGCCGAGTGCGATCGGCCGCCAGGGCTCTCCTCAGCGCCAGCGACGGCATGCCCCAGTCCAGGAAGGAGGAGCTCCTGTCGGTCATCCAGAGCTTCTTCTGCAACGGACAGCAGGAGGTCACGCAGGAGATGCTTCAGAGAGCTGCCACGCTGGAAACCAGGATCTTTAATGAGAGCTACGTGCCGCACGGACTGAAGGTAGTTCAGGTTTATGCTGAGCGCGGCCTGCGGGGTCTCATAGACTTGGAGCGCTGCTGGCGACAACACTTTCTGACCAGCATGCAGCCCCACCATTTGCCCCCTCTCTGGTCCGTCAACCACAACCATGACAAATATCTGCGCAAGTACGGGGAGGACCTGCAAATCCTGCTCAACTGAGCTCCTCGCCACAAACAGAAAGAGACTTTGTGCAACAACTGCTGGAATAGGAAGGTTTCCACTGTGTGCGCTACACCTTGGCGTCCTCGTCCTATGTTGTTTGAGTGCGTACCAGAGACTGACTTGCCTTGGCTACAGGTAAGCACCGGTGTTGACTtccaaatgagaaaaaaaaagaaaacaagactaGACTGTGGCCCCAGTTTGACTGGGCCCTAAGGGACCAGATGGAGATTGGGTAAGAGACTCTTTGGGAATCGAAAGCCACTGTGGTGAACAGCAGATCGCTAAACTCAAGAACAGAATGGTGGTAGGTAAAATAACAAGCAAGCATAACGTgcacacattttaatgtttaacataTTGAAAAGCATTCTCATTTTCCCTGTGAAAGTAGAATCTACTGTATTTTAACCAGCCCAAACCTGCTCTTAATTCTTAATCATGAATTGAATAAAAGATTCATAGCTTACCATTCTTGCAGGTTTGAGGCCgtattaaatgtttgtgttaAATGAGTTGTCTTTTGAGACTATACAAATGgctatttttacttattatggAGCTCTGTCACTTCTATTTAATTTCAggctggattttttttgtgggttttgAGGAACTCTATTTATCTTTGAGTCTGGACCAAATTGAACACTGCTTAGCACATGGCTGTACAATGAATGATCCTTCTTAGAGTCAGGACACCTCCAAAACGCACCAGCATAACATCTGGcgctgtgtgtttatatgcacCCCTGACTCGCTGAAGACAGGCTAAAATGATAGTGGATGAAATTCATTCTCGCCCCGATTACGATTTTGGAGTGCTAGTTTGTGTTGTATTTGCAGTTTCAGCCTGAGAGATTCAGCTCCATGCGATGAAAACGAATATAAATGGCCAAATCAAGGACACCGAAGTCTGAGCCTAACATAATTTACCTTAAGAAACACGACAgctttcctttttatttacatttgtccAGATGTAACCTATTATAAGCTTTTGTGTTTCCgtaatgtcaataaaaaaattacatttcatatgtTAA

Function

NR:

description
exonuclease 3'-5' domain-containing protein 2

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K20777 EXD2; exonuclease 3'-5' domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263543.1 True 3056 mRNA 0.54 10 18674126 18684463

Neighbor

gene id symbol gene type direction distance location
atp6v1c2 LOC107687954,LOC107753364,LOC107558472,LOC107687850,LOC107589777,LOC107758708 coding downstream 58067 18605141 ~ 18616059 (-)
ccr6b LOC107558470,LOC107753366,LOC107687955,LOC107758715,LOC107687848,LOC107589789 coding downstream 71392 18599225 ~ 18602734 (-)
trappc12 trappc12,LOC107684236,LOC107687835,LOC107753354,LOC107723257,LOC107589762 coding downstream 284472 18373990 ~ 18389654 (-)
psen1 psen1,LOC107684238,LOC107753355,LOC107687832,LOC107723284 coding downstream 319019 18347425 ~ 18355107 (-)
paplna papln,paplna coding downstream 332190 18313681 ~ 18341936 (-)
numb numb,LOC107687942,LOC107753345 coding upstream 1564 18686027 ~ 18726828 (-)
LOC122362202 galnt16,LOC107707671,LOC107687852 coding upstream 110126 18794589 ~ 18815103 (-)
LOC122362021 NA coding upstream 153351 18837814 ~ 18839240 (-)
LOC122362022 NA coding upstream 176509 18860972 ~ 18864442 (-)
LOC122361744 galnt16,LOC107707671,LOC107687852 coding upstream 203088 18887551 ~ 18917490 (-)
G122240 LOC107753347,LOC107687945,LOC107558486,LOC107687860,LOC107758716 non-coding downstream 185 18669928 ~ 18673941 (-)
G122241 NA non-coding downstream 6115 18667372 ~ 18668011 (-)
LOC122361655 odc1,LOC107687839,LOC107687948,LOC107753348,LOC107758719,LOC107558486,LOC107687945,LOC107753347,LOC107758716,LOC107687860 non-coding downstream 7004 18650479 ~ 18667122 (-)
LOC122361944 NA non-coding downstream 29553 18637050 ~ 18644573 (-)
LOC122362381 NA non-coding downstream 131879 18541215 ~ 18542247 (-)
G122245 NA non-coding upstream 12039 18696502 ~ 18698827 (-)
G122246 NA non-coding upstream 14381 18698844 ~ 18700255 (-)
LOC122361748 NA non-coding upstream 331134 19015597 ~ 19020095 (-)
G122270 NA non-coding upstream 336534 19020997 ~ 19022185 (-)
G122274 NA non-coding upstream 342317 19026780 ~ 19066968 (-)
LOC122361943 NA other downstream 29134 18631257 ~ 18644992 (-)
LOC122361613 NA other downstream 392554 18279458 ~ 18281572 (-)
LOC122361562 otofb,LOC107752720,LOC107701524,LOC107723281,LOC108423539 other downstream 669912 17982051 ~ 18004214 (-)
acyp1 acyp1 other downstream 710145 17962289 ~ 17963981 (-)
LOC122362005 crim1,LOC107582940,LOC107679775,LOC107662656 other downstream 2722688 15829484 ~ 15951438 (-)
G122247 NA other upstream 102419 18786882 ~ 18790880 (-)
LOC122362226 vps39,LOC107707670,LOC107572021,LOC107687842,LOC107558491,LOC107687939,LOC107758712 other upstream 135200 18819663 ~ 18836620 (-)
ralgapa2 ralgapa2,LOC107687934 other upstream 462868 19147331 ~ 19282456 (-)
LOC122362030 cldn20,tfb1m,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299,LOC108269830,LOC107680107,LOC107728964,LOC107675319 other upstream 1139996 19824459 ~ 20053139 (-)
LOC122362234 kif26a,kif26ab,LOC107739214,LOC107662598,LOC107732702,LOC107559913,LOC107586892 other upstream 1872260 20556723 ~ 20636159 (-)

Expression


Co-expression Network