XLOC_006734 (wdr35)


Basic Information

Item Value
gene id XLOC_006734
gene name wdr35
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32580382 ~ 32626247 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012960
GGTTACCTAGAAACCAAGCAAACCATTGTACAGGAGCGTAGATGGATGGAAAATCCACCGAAATTCCACATGCTTTGCAGAAGAGATCTAATATACAGTTCTTTGAGGAAAAGACAACGCTAAAATTACCCTAAGTCATTGCAACCGAAAAACACCGTTAGCATCCGATTAAAGCGAGACAAATCGGCCCAAAACGCTGCGGCAGGCTAGCAGGCTAAGCTAGCAAAGATGTTTATATACCTCAGCAAGAAGATTGCGATTCCAAACAATACGGTTTTAAAGTGTGTGTCTTGGAATAAAGACCAAGGTTTCATCGCCTGTGGAGGAGAAGATGGACTTTTAAAAGTGCTCAAACTCGAGACTTACACAGATGATGCCAAACTGAAAGGTTTGGCTGCTCCTAGCAACCTCTCCATGAATCAGACACTGGAGGGTCACAGCGGTGCAGTACAGGTTGTGACGTGGAACGAGCAGTATCAGAAACTTACAACCAGTGATCAAAATGGCCTCATCATTGTCTGGATGCTTTACAAAGGTTCATGGTATGAGGAAATGATCAATAACAGGAATAAGTCTGTGGTGAGGAGCATGAGCTGGAATGCTGATGGTCTGAAGATCTGCATTGTGTATGAGGACGGTGCTGTGATTGTGGGCTCAGTGGATGGCAACAGGATCTGGGGTAAAGAACTGAAGGGGACTCAGTTGGCACACGTGGCCTGGTCTCCAGACAGTAAGATCCTGCTGTTTGGCATGGCCAATGGAGAGATCCACATCTATGACAACCAGGGGAACTTCATAATGAAAATGAGCATGAGTTGCTTGGCGAATGTGACTGGTGCTCTCAGTATAGCAGGTATCCACTGGTACCCGGGTACAGAGGGTTATCTGGAGCCAGAGTGTCCCTGTCTGGCTGTTTGCTTTACTAATGGCCACTGCCAAGTAATGCGGCATGAAAGCGATGACAGTCCTGTGATCATCGAGACAGGTATGTGGAATGTGGCCAGTATCCAGTGGAATCATTGTGGCAGTGTTCTGGCTATAGCAGGATCACTCAGAAACAGTGGAGCAGAGAAAGAAATGAATGTTGTTCACTTCTACACACCATTTGGAGAGCACTTGCGGACATTGAAGGTTCCAGGCAAGCAGATGACTGCTGTATCATGGGAGGGTGGAGGACTCCGAATCGGCCTAGCTGTAGATTCCTACATTTACTTTGCCAACATTCGGCCAGATTACAAGTGGGGTTACTGCAGTAACACAGTGGTGTATGCATACACAAGACCTGATAGACTGGAGTACAGTGTGGTTTTCTGGGACACTAAGAATAACGAAAGGTTTGTCAAGTACGTTAAGAGTCTCATGTCCATTACCACCTGTGGAGATTTTTGCATCCTGGCCACCAAAGCAGATGACACACATCCACAGGAGGACACTGAAGCTGAGGCTGGATCAGCAATGGCATTTAATGAGCTGTCCAATCAAAACACTTCAAAGGATCGGTCAAAGAGGAGAAAGTATGTTCTGGTGTTGTGTAACTCCATAGGAACTCCACAGGACTCCAAATATATTGACATTGACCCCCTCTTCGTAACCATGACAAAGACACACGTGATTGCTGCTTCTCGGGAGGCATTTTACATTTGGCAGTATCGTGTTGCAAAAAAACTCACCGCTCTTGAAATCAACCAGGTCACCAAGACAAGAAAAGAAGGCCGGGAGAGGGTTTATCACATCGATGACAGTCCAAGCGGAACATCAGATGGGACACTGAACTTTGCCAAAGCCTTCACAGCTACCAGAGATCCGATCTGCTGCATCACAGCATCAGACAAGATGCTCCTAGTGGGACGTGAGTCTGGTATCTTACAGAGATACAGCCTGCCCAACATCAGCCTCCTGCAGAAATATTCTCTCACATCTAGACCGTATCAGCTCTCCCTTAATTGTAACTCCAGtcgTCTGGCTATAATAGACATCACAGGAGTGTTGACCTTTTTGGATGTAGAGACGCGAGGTTCAATGGGAGATGCAGAGGGCGGGTCTACAGCTGGAGACCCATCTAAATTTGAGCGCAAGGATGTCTGGGATATGAAATGGGCCAATGACAACCCAgatctgttctccatgatggagaAAACCCGAATGTATGTCTTCAGAAACCTGGACCCTGAGGAGCCAATTCAAACATCTGGCTTCATCTGCCACTTTGAGGATCTGGAGATCAAATCTGTTCTTCTGGATGAGATCATGAGGGATCCAGACGTGCCCAATAAAGATTATTTAATGAACTTTGAGATCCGCTCACTGAGGGACAGCAGGGCGCTGATTGAGAAGGTTGGAATTGAAGACGCTTCTCAGTTTATCGAGGACAATCCCCATCCGCGCCTCTGGCGTCTGTTGGCAGAAGCAGCGCTGCAGAAGCTGGATTTGAAGATGGCTGAGCAGGCATTTGTGCGCTGTCGGGACTATCAGGGTATTGAGTTTGTGAAGAGATTGAGCAACCTGCAGAGTGAAGCCATGAAGCAGGCTGAGGTGGCTGCTTACTTTAGCAGGTTCGAGGAGGCAGAGAGGATGTACCTGGACATGGATCGCAGGGATTTGGCAATCAGTTTGCGCATAAAGCTCGGTGATTGGTTCAGGGTTCTGCAGTTGTTGAAGACAGGATCAGGTGACTCTGATGATGCTCTTCTGGAGCAGGCTTACAACGCCATTGGAGACTACTTTGCAGACAGACAAAAATGGTTGAATGCAGTCCAGTATTACCTGCAAGGCCGAAACCAGGAGCGTTTAGCTGAATGTTATTATATGCTGGAGGACTATGATGGTCTGGAGAGACTTGCAAACTCCCTGCCGGAAAACCATAAACTGCTACCAGATATTGGTCAGATGTTTGTTACTGTGGGAATGTGCGAGCAGGCCGTCAGCGCGTTTCTGAAATGTAACCAGCCCAAAGCAGCTGTGGATGCCTGTGTGCATCTAAACCAGtggaacaaagcTGTGGAACTTGCCAAAAACCACAGTATGAAGGAAATTGGACCCCTGCTGTCCAAATACGCCTCACATCTGCTGGAGAAAAACAAAACTCTGGAGGCTGTAGAGCTCTACCGAAAAGCCCATCACTTCCTGGATGCTGCCAAACTCATGTATAAGATTGCTGAAGAAGAGGCGAAAAAGAGAACACGACCGCTGCGAGTGAAGAAGCTATATGTGCTCGCTGCCCTGCTGGTGGAGGACTTTCACACGCAGATCAAAAGCTCACAGCAAAGCAAAACCAAAGGCAAGAAATCAGAGGCTACCAGTGCATTAGCAGGACTGTTAGAGGAAGATGAGTCGTCTTCAGACAGTCGTATCCTGGATGACGCCTGGCGCGGGGCAGAGGCCTATCATTTCTTCCTGCTTGCGCAAAGACAGCTGTACGATGGCAAGGTGGACGCGGCTATGAGGACAGCTCTCCATCTCCGTGATTATGAGGACATTATCCCTGCTGTGGAGATTTACTCTCTGTTAGCCATCTGCTCTTCTGCCAACGGCGCGTTTGGTACGTGCTCACGCGCCTTCATTAAGCTGGAGTCTCTGGAAACACTGACTCCAGATCAGAGGCAGCTTTATGAAGACCTGGCCTTGGAGATCTTCACCAAACACAGTCCCAGAGACACCCGGCAAAGCCAGCGAGACAGCCTTACTGAAGGGCCAGAGGGCAAGTTGCCTACCTGTATAGTCACTGGAAGAGTGATTTCAGAGTACCAGTTCTGGATGTGCAGTGTGTGTAAACACTGTGCTCTGGAGCAGGAGATCACACAACAAAACTTCTGTCCCCTCTGTCACTCCACAGTGGGATAATATTTTCCAGTGGCATTCCCAATCTCAGCCCTCGCTCCATCAAATGTCAGTCTTTTTTATGTACTTTAGGATAAAAACTCTGCCTTTGGGTTAAAAGGGATAAAATGTTATTTGGATGGTCaaacaaatgaacatatttttatacttttcatTTCCTTTCAACAGCCttttcatatatttatgtatgtaataaaatgtatgtatgcatttacTTGACATAATATTAAACAGTTCTTTTCAGCTGAAAA
>TCONS_00012961
GCAGGTTCGAGGAGGCAGAGAGGATGTACCTGGACATGGATCGCAGGGATTTGGCAATCAGTTTGCGCATAAAGCTCGGTGATTGGTTCAGGGTTCTGCAGTTGTTGAAGACAGGATCAGGTGACTCTGATGATGCTCTTCTGGAGCAGGCTTACAACGCCATTGGAGACTACTTTGCAGACAGACAAAAATGGTTGAATGCAGTCCAGTATTACCTGCAAGGCCGAAACCAGGAGCGTTTAGCTGAATGTTATTATATGCTGGAGGACTATGATGGTCTGGAGAGACTTGCAAACTCCCTGCCGGAAAACCATAAACTGCTACCAGATATTGGTCAGATGTTTGTTACTGTGGGAATGTGCGAGCAGGCCGTCAGCGCGTTTCTGAAATGTAACCAGCCCAAAGCAGCTGTGGATGCCTGTGTGCATCTAAACCAGtggaacaaagcTGTGGAACTTGCCAAAAACCACAGTATGAAGGAAATTGGACCCCTGCTGTCCAAATACGCCTCACATCTGCTGGAGAAAAACAAAACTCTGGAGGCTGTAGAGCTCTACCGAAAAGCCCATCACTTCCTGGATGCTGCCAAACTCATATTGCTGAAGAAGAGGCGAAAAAGAGAACACGACCGCTGCGAGTGAAGAAGCTATATGTGCTCGCTGCCCTGCTGGTGGAGGACTTTCACACGCAGATCAAAAGCTCACAGCAAAGCAAAACCAAAGGCAAGAAATCAGAGGCTACCAGTGCATTAGCAGGACTGTTAGAGGAAGATGAGTCGTCTTCAGACAGTCGTATCCTGG
>TCONS_00012962
CTCCAAATGTAGTCAAAGCTCTGAAAAGTGATACCAAATACACATTGATCATTGCCAGGATAAAGATTCTTTCAAAATGTTAAACAAATTAGAAAACCTAATCATACATACTGTACAAATGACTGTACCATGATGTTTTGAAAAGTAAGGACTAAATGACTCATTTTAAGAGCTACATTCAGATAAACAGAGGACAGTGGACAGTAGACCGACATAATATTTGAATGCAAAATTTCATACAATTTTGAGAAAGCTGTTCTTAAGTGCAAGATGCAACCACTTTACCACAGGCATTTAATGAGCTGTCCAATCAAAACACTTCAAAGGATCGGTCAAAGAGGAGAAAGGTATTCTGCAAATGAAGCTTCTCAGATATTACCTTGATGCTGAACAGTGAAGTGTGCTCATGCAGTAAAGAGATGCCTGTCTTTCCTCTGTCCACAGTATGTTCTGGTGTTGTGTAACTCCATAGGAACTCCACAGGACTCCAAATATATTGACATTGACCCCCTCTTCGTAACCATGACAAAGACACACGTGATTGCTGCTTCTCGGGAGGCATTTTACATTTGGCAGTATCGTGTTGCAAAAAAACTCACCGCTCTTGAAATCAACCAGGTCACCAAGACAAGAAAAGAAGGCCGGGAGAGGGTTTATCACATCGATGACAGTCCAAGCGGAACATCAGATGGGACACTGAACTTTGCCAAAGCCTTCACAGCTACCAGAGATCCGATCTGCTGCATCACAGCATCAGACAAGATGCTCCTAGTGGGACGTGAGTCTGGTATCTTACAGAGATACAGCCTGCCCAACATCAGCCTCCTGCAGAAATATTCTCTCACATCTAGACCGTATCAGCTCT
>TCONS_00012963
GGGTTATCTGGAGCCAGAGTGTCCCTGTCTGGCTGTTTGCTTTACTAATGGCCACTGCCAAGTAATGCGGCATGAAAGCGATGACAGTCCTGTGATCATCGAGACAGGTATGTGGAATGTGGCCAGTATCCAGTGGAATCATTGTGGCAGTGTTCTGGCTATAGCAGGATCACTCAGAAACAGTGGAGCAGAGAAAGAAATGAATGTTGTTCACTTCTACACACCATTTGGAGAGGTGAgaacttagctgataatcaataaaccGTAATATCCTCGAGCACAGGGTTCCCTcctgttagaagggcgagaggggagttcgagctcaggtaggtctcgagaactcccctactTGTTGCCATGTGAGAAGTGTAACTAAGGTTGTCTTGGGTGATAACTTGGTTTAGTCGATTGCtatggtgtatgtttttggacggtgggaggaaaccgggaaaccagaggaaacccacatgtacactgggagaacatgaaaactccacacagaaacaccaactggcctgATAGGAGGTTAGACCAGtggttttcttgctgtgaggcaacagtgctagccactgggccaccgtgtc

Function

symbol description
wdr35 Acts upstream of or within cilium assembly. Predicted to be located in ciliary basal body and cytoplasm. Predicted to be part of intraciliary transport particle A. Predicted to be active in axoneme. Human ortholog(s) of this gene implicated in Ellis-Van Creveld syndrome; cranioectodermal dysplasia 2; and short-rib thoracic dysplasia 7 with or without polydactyly. Orthologous to human WDR35 (WD repeat domain 35).

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0030991 intraciliary transport particle A cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060810-148 Acts upstream of or within cilium assembly. Predicted to be located in ciliary basal body and cytoplasm. Predicted to be part of intraciliary transport particle A. Predicted to be active in axoneme. Human ortholog(s) of this gene implicated in Ellis-Van Creveld syndrome; cranioectodermal dysplasia 2; and short-rib thoracic dysplasia 7 with or without polydactyly. Orthologous to human WDR35 (WD repeat domain 35).

Ensembl:

ensembl_id ENSDARG00000069269

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012960 False 4088 mRNA 0.47 29 32580382 32626247
TCONS_00012961 False 800 nonsense_mediated_decay 0.49 7 32588552 32595220
TCONS_00012962 False 865 lncRNA 0.42 5 32602178 32620126
TCONS_00012963 True 584 lncRNA 0.49 2 32621834 32622523

Neighbor

gene id symbol gene type direction distance location
XLOC_006733 kcns3a coding downstream 2996 32575777 ~ 32577386 (-)
XLOC_006731 NA coding downstream 13126 32457931 ~ 32567256 (-)
XLOC_006732 NA coding downstream 85510 32492067 ~ 32494872 (-)
XLOC_006730 NA coding downstream 124389 32069898 ~ 32455993 (-)
XLOC_006729 BX470107.1 coding downstream 517366 32023488 ~ 32063016 (-)
XLOC_006735 matn3b coding upstream 1197 32627444 ~ 32635885 (-)
XLOC_006736 bend3 coding upstream 15293 32641540 ~ 32648416 (-)
XLOC_006737 pdss2 coding upstream 34297 32660544 ~ 32726178 (-)
XLOC_006738 CU019663.1 coding upstream 167617 32793864 ~ 32807641 (-)
XLOC_006739 rock2a coding upstream 188994 32815241 ~ 32899322 (-)
XLOC_006471 BX537274.2 misc downstream 22315477 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 31754157 825904 ~ 826225 (-)
XLOC_006728 NA non-coding downstream 581370 31983061 ~ 31999012 (-)
XLOC_006741 NA non-coding upstream 320464 32946711 ~ 32996496 (-)
XLOC_006752 NA non-coding upstream 634884 33261131 ~ 33301170 (-)
XLOC_006757 NA non-coding upstream 826191 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 831276 33457523 ~ 33459318 (-)

Expression


Co-expression Network