CI01000001_00445369_00466166 (TMCO4)


Basic Information

Item Value
gene id CI01000001_00445369_00466166
gene name TMCO4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 445240 ~ 466897 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00445369_00466166.mRNA
ACAAATGGCACTTCAGCTCTATTTCTGAAGGGCGTGTATTTATATTAACGTACAACACAAATAAAAGAGCTGATTACATTTATGAGGCACAACATCAACAATTAATAACATAAATCCTCCTCAAAACATCACATAAACATAAAATCATGTTTAAATTATATATACTAAGGAGACAACCCTGCTTATGAATATTAATTAATTATTAAGGTTATGCCACGGAATTCAATTAATATTAATATTCGACAATATTTCTAGCCAAGTCAGCTAACACAAAAAGAGCTTATATTTGTCAGGCAAAACGTCGACAGTAATAGCATTAATTATTAATTGCCATCCTCAGAACGTTTCAAATAAATCTACAATCGCCATGAGGCAATTTTGAGTTTTTATCAAGTCATGCTAATGTTTCTTGGTAACATTCCCATACTGTCCAGTCACGTTACGTCATTAATATTCATAAGCCAATCTTGAACATTTGTCAGCTGACGACGCCAAAGTTACCAACGTCTGCTGTTCATCCAATCGGTTTCGCCAGCTGGACGAACGTAACGTAACGTTATTAATATTCATAAGCCAGTTCTTCACGATTGGTGAGTTGATTTGAGCAATAGAGGGCGCTCCTGCATACTAGAACAACTTTGTGCTGAACTTTCATCTGTTACGACAACAAAGTAGCAACTCTTCTACATGGAGAAAACAAATCTGCTGTAATTTACTGTGAGGATAAACCAATGGAACCAACAAATAACAACAATGAGGACCCGAAATTAACTCCAGATCCAGGAGGACAGAAGAATAATCAGTCACCAGCAGAGAAAGTGTCTGGTCGGCAGCTGAGTGAACCGGGGCGGTTTGCGTACGCTGGGTTATGTGGAGTGTCCCTGGGCCAGCTGTTTCATGGACCCGAGCAAAAAAGTTTTCGTGAGGCGTATCTGAAGGGTCTGGTTCAGTGGCTGAATCTCGATGAGTCGGTCATGCCAGTTATGCAAGCTTTCCTGGCAGGACTCGGGTTCGAAGGCACTGACACCTTCCTGTCCATTTTGCACGCAGAGCCGCTGCTCAGAACCGGAGCGTTACCCATCACTCAGGATCTCGTGTCTTTCTCTGTCAAAGATGGACATTATGATGCCAGGGCTCGTGTTCTGATCCGACATGTCAGCTGTCTGCTGCGTGTGACCCAACAGCAGCTGGAGGATTTTGAAGAGACTCTCGGAGAGAAATTGAGAGAGGCAGGAGAGGAGAGCGAAGAAGAGTCTTCAAGACGGCAGAAGAAAGAGAGGGGTCGTAAATTGCGCCGATATCTGCTCATCGGACTTGCCACTGTGGGTGGAGGGACGGTAATCGGTGTCACAGGAGGGTTGGCGGCTCCTTTAGTGGCTGCCGGGGCAGGAGCGGTGCTGGGAGCGGGTGGAGCCGCTGTACTGGGATCAGCCACGGGCATCGCCATCATGGCCTCATTGTTTGGAGCCGCAGGGGCCGGGTTAACAGAGGGCAAGGTGGTTCATATCATCTCTTGCACGATTCTTGCAACCCTTTGGTTACAATGTTTCATCACTAGGCTTTGTTACAGGATTGGCTATAAAATGAACAAGCGTGTCGGAGCAATAGAGGAGTTTGAGTTTCTTCCGATGAGTTCTGGAAAGCATCTACATCTGACTATAGCCGTGACAGGCTGGTTGTGCAGCGGCAAATACAGTTCGTTCCAGGCTCCCTGGTCCAGTTTAGGAGCGTGTGGAGAGCAGTACTGTCTGAAATGGGAGTCGCGTTATTTATTGGATCTGGGCTCTATTCTGGACTCATTATGGGATGGGCTTGTTAGTGTCGTGGCCCAGGAGGCCCTCAAATACACAGTGCTCTCAGGCATAGTAACTGCTCTGACATGGCCTGCCTCTCTGCTGGCTGTGGCCAGTGTGATCGACAACCCCTGGGGAGTGTGCCTGAGTCGCTCGGCGGAGGTGGGGAAACACCTTGCACAGGTGCTGCGGAGCCGACAGCAGGGAAAGCGCCCTGTCAATCTAATTGGCTTTAGCCTTGGAGCTCGTGTCATTTACTTCTGCCTAGAAGAGCTCGCTAATGATCAAGGTAGTGAAGGTGTGGTGGAAGATGTGGTGCTGCTGGGGGCCCCTGTGGACGGATCCGAGAAAACATGGCAGAGACTCTCCAGGGTAGTGGCTGGGAAGATTGTTAATGGATATTGCAGAAGTTCGTCTGTCCAGCTGTCTGTTGCTGGACTCCAGCCAATCAATTCACAAGACCGCAAAATAATCAATGTGGATCTGTCATCAGTGGTAAAAGGACACCTGGACTACATGCGTCAGATGGACACCATCCTAGTAGCAGTGGGGGTTCCTACTAGGGAAGAGGCTGGAGCCATGAGTAGCAAACCACAGCTGGTTAATTTATCTCAGGAAAAGCCAGACACTCCAGAATCAGCTGGTCAGAGCACAGTCAAAGGGGAACCATCCATGGACATTTCAAACAAAGATACTTCAGATGTCCAATCTTCAAATGTAGATCAATACAAGAAACGGCATGCCAGGAAGGAGTCTGAGAATGGCTGGGATATACCTGATATATCTGATTTACTGGATTCCATCAGTGAATGCGATGGCATCCCTGAATCCTGTCAAGGGAATGCTCATTCGCCATGTGCTCCTGGAGACGAGAATCATGTTGAACCATCTCAGAATCAGAGCAAAATAGACAGAGAAGATGAAGGTAACACAGACTTTGAGCGCACGTCCTGGGACTGGGACGACACAAACTGGACTGCTGAACACACAAACACACCCTGTCAGTCGCACACTGAAGCACAGAACCAATTAACCAATGGCAAACCTGCTTGTTCTGAGCCAAGATGACATTTCCGTAATTCACTCACAGAATGTATGTTGGGTCTAGATGGTAAACCTTGTCCCGAGAAACTCTCCTTAGAGTCACATTTGCTGCTACCAAGATGAGGGATAAGGTTGCTGTGGGACTCGAATAAA

Function

symbol description
tmco4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMCO4 (transmembrane and coiled-coil domains 4).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00445369_00466166.mRNA True 2990 mRNA 0.47 15 445240 466897

Neighbor

gene id symbol gene type direction distance location
CI01000001_00362143_00378213 NA coding downstream 67027 361614 ~ 378213 (-)
CI01000001_00305883_00333574 FYCO1A coding downstream 111442 305491 ~ 333798 (-)
CI01000001_00238241_00249437 NA coding downstream 195803 238241 ~ 249437 (-)
CI01000001_00222940_00227735 NA coding downstream 217233 222800 ~ 228007 (-)
CI01000001_00218182_00220017 NA coding downstream 225124 217657 ~ 220116 (-)
CI01000001_00493196_00498517 OTUD3 coding upstream 25868 492765 ~ 498517 (-)
CI01000001_00500347_00500698 G0S2 coding upstream 33186 500083 ~ 500698 (-)
CI01000001_00506140_00517386 CAMK1GB, CAMK1G coding upstream 38857 505754 ~ 517386 (-)
CI01000001_00538192_00559082 MICAL1 coding upstream 70696 537593 ~ 559082 (-)
CI01000001_00580789_00602408 SRC coding upstream 112179 579076 ~ 602628 (-)
G12946 NA non-coding downstream 31292 413684 ~ 413948 (-)
G12945 NA non-coding downstream 39081 405331 ~ 406159 (-)
G12896 NA non-coding downstream 85501 358871 ~ 359739 (-)
G12933 NA non-coding downstream 109207 335725 ~ 336033 (-)
G12921 NA non-coding downstream 162458 282555 ~ 282782 (-)
G12955 NA non-coding upstream 37952 504849 ~ 505048 (-)
G12963 NA non-coding upstream 138204 605101 ~ 606584 (-)
G12907 NA non-coding upstream 147323 614220 ~ 711316 (-)
G12997 NA non-coding upstream 350890 817787 ~ 818127 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 310315 122814 ~ 131380 (-)
G14104 NA other upstream 1296772 1763669 ~ 1771468 (-)
G14219 NA other upstream 1527313 1994210 ~ 1994898 (-)
G14228 NA other upstream 1589077 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1792492 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 3925417 4392314 ~ 4399804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location