colec11 (colec11)


Basic Information

Item Value
gene id colec11
gene name colec11
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 14735161 ~ 14740548 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263804.1
GCACCTCAAACCTATAGGCGTGTGAGATGAAAAATTTCAGAGAGACCACCAGTGAGAAAACCACCGATAACTCACTTGGATCCATATACAGCCTGAGTCTGCTGCATATAGCGGGCTTTGAAATTCAACAGAAGTATGGGTGAAGAAAAGCTGGTGGCTTGCATGTTGGTCACTGTGTTAAGTCTGACTGTAATGAGGTCAGTTTATGGTCAGCACATGCCAGAAGAACCGTGCTCGGTCCAGATCCTCGTCCCTGGACTCAAAGGTGACCCAGGAGAGAAAGGGGAGAAGGGAGCACCTGGGAGACCTGGGAGAGTAGGGCCACCTGGAGAGCCAGGTTCCCCTGGAGTCAAAGGCCAAAAAGGTAGCACTGGACGCTATGGTAAGATGGGTCCCGCTGGACTCAAAGGTATAAAAGGTGATATGGGAGATCCAGGACCCAAGGGCCCAAATGGAGAGCCAGGCGTCCCCTGTGAGTGCGCACCCTTACGGAAAATGATCGGTGAAATGGATATTCAAGTGGCGCAATTAACCAATGAGCTGaagttcattaaaaatgATCCTCATTTTTCAGCCCTGCCTTCCCCCGCAGCTGTCGCTGGCGTCAAAGAGACAGACAGCAAGGTCTATCTGCTGGTGAAGGAGGAAAAGCGCTACAGGGACGCGGAGGTGTTCTGTCAGGGGCGAGGGGGACACCTGGCTATGCCCAAAGACGCGGCGGCTAACAGAGCCATCGCTGGCTACGTCACCGCAGCTGGCCTCAGTCGAGTGTACATCGGCATTAATGACCTGGAGCGAGAAGGCCACTTTGTGTATGTGGAGCGCTCACCCATGTCCACTTTCAGCAAGTGGAGGGAGGGCGAGCCGAACAACGCTTACGGTGACGAGGACTGCGTCGAGATGGTGTCTTCAGGAGAGTGGATTGATGTGGCTTGTCACGTCACTATGTACTTCGTGTGTGAGTTTGACAAGGACACCGTATGAGCTTCACTACCAATCTAGAGGGTTTCGATCCCATTCCTCGCACCCCGCCGCTCtgcattttttgtatgtttctttttgttaacCCACCTGACTCTCGTTAGAAGAGGGCTCCGTGAATGAACTGTTTTCCCATCAACATGGTCCCTACACGGTGTTCGTTGTCCTCTACTACCTGAGCAGGGGAAAAGTTTACTTCACTTCGGAACATTAATTCACAGatttgtgcaataaataaacGAATATGATTTCACTTACGTCTCGCTAAAGACGAGTCACTCGTATAGTTTTGAATGGGGAAAAGCGCAaggtttaaaatggtttaaaagttAATCACAAGAAACCCCGCCTTCcaaataaaatagccaatcgcTGATCTGCGAAGTTATCCGCATCACCGCATCTGTCCTTAGAAGTTCCGGTTGCTATGGAAACAGTCAGCATTCTGAGACGTGTGAAACAACAATTATTGCACGGTTGTTGTTagatttcattggtgatttcaaatatgcaaTTTAATCATAAGCTTAGCGATCCGTTCGGGAGAATTCGATGTTTCCCAACACAAAGAGATAGGAGGTGCACTTGGATGCCCGAGAggcgtttcaaagatggccgccgagTGACATGATttgtcttaaagagactttgGTCTCGCACACTTCAATGCACTGTGAATGGAATGTGGATCCAGTTGTGTGCACTTCGTAGGGCACATACGTTCGAATAGAAGAAACGTTTGAAGCGACAAGAGATGCGTACAAAATGAGCAGAGCGGTGGGGCGCGAGGACTGGAGTTGAGAATCGCTGCTATGGGGGAAAAGTCCATTTAGACATGTTTATAACACTCTGGGTTAATGTAAATGCAGTACTCCTACATTTTGTCATCTTTGGCAACGCTGACAGCAGTGTGACATGCAAGGCGTCACGTAAAGccgtttaaaacaacatttaattattatgattatacacAGCAGTCCcaaagtttagggtcagtaaggTTTTGGCTGTTTTAAGCACtcaccaaagctgaatttatttgatcagttaGCAGCTAGCAGTTAAACGTCACTCTTTAGCGTCacatgcttcagaaatcattcttacaAGCTGaattgctgcttaagaaacatttcttattatcagtatATGTATCAATGttcaaaagtacagcattttataaaaaaagatgaatgtaTTCACTATCTTGTTGTTTAAAACTGTATATCAATTGATAGACTTTATGAaaggtactttttaaaatgtttcttttgtttaatcACCCTGCAGGAATATATGTTATACAGATCTGTTAACATGCAAACTATTCACtatttactgttaaatattCACTCTTTCTTACTACTTTCTGTTTTACCTTTCTTCCCAATTCAGATTTGAATTACttagtttattattagtttcCCGAATAGGATTAGCGTACTTACAGAACTAGCAAACAAGAGTAGATTTACGTAACACAGTCTTCTAGACTGTATGGTTGAGGTTAGAAACTAATGGgcagacattttattctccccagtaaaatgactgaaatggcTGTCCCAGTTTACCAGTAGTGCATCTTcccatttatttaatgcattataggCAGAATGGAACAGTGTCAAGGTGACGTAAGGATCAATAGATggtattatattgtatatgcCCATCATATTAAGTCGTTTTATAACCTTGCCAGGTCAATAGATGACCGAGCGTACACACGCATAGAATACAGTA
>XM_043263805.1
GTTGATGTTATCAAAtgaatatataactatattatataatatatagcaatatataactacaatgcaataataaatgctAACTAATGGGACTGAAGTGTTACCATTAtattgtaaagttttaccaaTATATTAAGtgttacaaataatattatataaaataatatgatatttttttttgctcattacACAGgaaaatgttagtttttctgGATTTTTCCAGATGAAATTCCAGCAAATATTTACTGCCACCCTGTGCGCCGACACACAAACTGCATCATTTCCGTTCCCAAGTTTTCCTCGTCCTGGCTGACCTCAAAATGAAACGAGTTTGTGGTTTCTGCTCAGTTATATTGCAGCGCATTATCACGTCAAATTGCACCTCAAACCTATAGTAATATAATTAAGTTCCCTTTCTACCTCGGCTTCTATACTATCTCAACTCAAACGTGCGAATGCCGGGAATGCTTCTGATGTGTAACGGCAAGGAATGCGTTAAGGGTTGTGCTGTCACTGACCCTGATGTTTTTCCATGGAGTTATCAGAGAGGAGTGCTGCAGAGCCGCTCTTATCTTTGTGTTTACACGTACTTGTGCTCACTCTCAGGCCTGTGTCTTGCAGGGCGTGTGAGATGAAAAATTTCAGAGAGACCACCAGTGAGAAAACCACCGATAACTCACTTGGATCCATATACAGCCTGAGTCTGCTGCATATAGCGGGCTTTGAAATTCAACAGAAGTATGGGTGAAGAAAAGCTGGTGGCTTGCATGTTGGTCACTGTGTTAAGTCTGACTGTAATGAGGTCAGTTTATGGTCAGCACATGCCAGAAGAACCGTGCTCGGTCCAGATCCTCGTCCCTGGACTCAAAGGTGACCCAGGAGAGAAAGGGGAGAAGGGAGCACCTGGGAGACCTGGGAGAGTAGGGCCACCTGGAGAGCCAGGTTCCCCTGGAGTCAAAGGCCAAAAAGGTAGCACTGGACGCTATGGTAAGATGGGTCCCGCTGGACTCAAAGGTATAAAAGGTGATATGGGAGATCCAGGACCCAAGGGCCCAAATGGAGAGCCAGGCGTCCCCTGTGAGTGCGCACCCTTACGGAAAATGATCGGTGAAATGGATATTCAAGTGGCGCAATTAACCAATGAGCTGaagttcattaaaaatgCCCTGCCTTCCCCCGCAGCTGTCGCTGGCGTCAAAGAGACAGACAGCAAGGTCTATCTGCTGGTGAAGGAGGAAAAGCGCTACAGGGACGCGGAGGTGTTCTGTCAGGGGCGAGGGGGACACCTGGCTATGCCCAAAGACGCGGCGGCTAACAGAGCCATCGCTGGCTACGTCACCGCAGCTGGCCTCAGTCGAGTGTACATCGGCATTAATGACCTGGAGCGAGAAGGCCACTTTGTGTATGTGGAGCGCTCACCCATGTCCACTTTCAGCAAGTGGAGGGAGGGCGAGCCGAACAACGCTTACGGTGACGAGGACTGCGTCGAGATGGTGTCTTCAGGAGAGTGGATTGATGTGGCTTGTCACGTCACTATGTACTTCGTGTGTGAGTTTGACAAGGACACCGTATGAGCTTCACTACCAATCTAGAGGGTTTCGATCCCATTCCTCGCACCCCGCCGCTCtgcattttttgtatgtttctttttgttaacCCACCTGACTCTCGTTAGAAGAGGGCTCCGTGAATGAACTGTTTTCCCATCAACATGGTCCCTACACGGTGTTCGTTGTCCTCTACTACCTGAGCAGGGGAAAAGTTTACTTCACTTCGGAACATTAATTCACAGatttgtgcaataaataaacGAATATGATTTCACTTACGTCTCGCTAAAGACGAGTCACTCGTATAGTTTTGAATGGGGAAAAGCGCAaggtttaaaatggtttaaaagttAATCACAAGAAACCCCGCCTTCcaaataaaatagccaatcgcTGATCTGCGAAGTTATCCGCATCACCGCATCTGTCCTTAGAAGTTCCGGTTGCTATGGAAACAGTCAGCATTCTGAGACGTGTGAAACAACAATTATTGCACGGTTGTTGTTagatttcattggtgatttcaaatatgcaaTTTAATCATAAGCTTAGCGATCCGTTCGGGAGAATTCGATGTTTCCCAACACAAAGAGATAGGAGGTGCACTTGGATGCCCGAGAggcgtttcaaagatggccgccgagTGACATGATttgtcttaaagagactttgGTCTCGCACACTTCAATGCACTGTGAATGGAATGTGGATCCAGTTGTGTGCACTTCGTAGGGCACATACGTTCGAATAGAAGAAACGTTTGAAGCGACAAGAGATGCGTACAAAATGAGCAGAGCGGTGGGGCGCGAGGACTGGAGTTGAGAATCGCTGCTATGGGGGAAAAGTCCATTTAGACATGTTTATAACACTCTGGGTTAATGTAAATGCAGTACTCCTACATTTTGTCATCTTTGGCAACGCTGACAGCAGTGTGACATGCAAGGCGTCACGTAAAGccgtttaaaacaacatttaattattatgattatacacAGCAGTCCcaaagtttagggtcagtaaggTTTTGGCTGTTTTAAGCACtcaccaaagctgaatttatttgatcagttaGCAGCTAGCAGTTAAACGTCACTCTTTAGCGTCacatgcttcagaaatcattcttacaAGCTGaattgctgcttaagaaacatttcttattatcagtatATGTATCAATGttcaaaagtacagcattttataaaaaaagatgaatgtaTTCACTATCTTGTTGTTTAAAACTGTATATCAATTGATAGACTTTATGAaaggtactttttaaaatgtttcttttgtttaatcACCCTGCAGGAATATATGTTATACAGATCTGTTAACATGCAAACTATTCACtatttactgttaaatattCACTCTTTCTTACTACTTTCTGTTTTACCTTTCTTCCCAATTCAGATTTGAATTACttagtttattattagtttcCCGAATAGGATTAGCGTACTTACAGAACTAGCAAACAAGAGTAGATTTACGTAACACAGTCTTCTAGACTGTATGGTTGAGGTTAGAAACTAATGGgcagacattttattctccccagtaaaatgactgaaatggcTGTCCCAGTTTACCAGTAGTGCATCTTcccatttatttaatgcattataggCAGAATGGAACAGTGTCAAGGTGACGTAAGGATCAATAGATggtattatattgtatatgcCCATCATATTAAGTCGTTTTATAACCTTGCCAGGTCAATAGATGACCGAGCGTACACACGCATAGAATACAGTA
>XM_043263806.1
TTATCAAAtgaatatataactatattatataatatatagcaatatataactacaatgcaataataaatgctAACTAATGGGACTGAAGTGTTACCATTAtattgtaaagttttaccaaTATATTAAGtgttacaaataatattatataaaataatatgatatttttttttgctcattacACAGgaaaatgttagtttttctgGATTTTTCCAGATGAAATTCCAGCAAATATTTACTGCCACCCTGTGCGCCGACACACAAACTGCATCATTTCCGTTCCCAAGTTTTCCTCGTCCTGGCTGACCTCAAAATGAAACGAGTTTGTGGTTTCTGCTCAGTTATATTGCAGCGCATTATCACGTCAAATTGCACCTCAAACCTATAGTAATATAATTAAGTTCCCTTTCTACCTCGGCTTCTATACTATCTCAACTCAAACGTGCGAATGCCGGGAATGCTTCTGATGTGTAACGGCAAGGAATGCGTTAAGGGTTGTGCTGTCACTGACCCTGATGTTTTTCCATGGAGTTATCAGAGAGGAGTGCTGCAGAGCCGCTCTTATCTTTGTGTTTACACGTACTTGTGCTCACTCTCAGGCCTGTGTCTTGCAGGGCGTGTGAGATGAAAAATTTCAGAGAGACCACCAGTGAGAAAACCACCGATAACTCACTTGGATCCATATACAGCCTGAGTCTGCTGCATATAGCGGGCTTTGAAATTCAACAGAAGTATGGGTGAAGAAAAGCTGGTGGCTTGCATGTTGGTCACTGTGTTAAGTCTGACTGTAATGAGGTCAGTTTATGGTCAGCACATGCCAGAAGAACCGTGCTCGGTCCAGATCCTCGTCCCTGGACTCAAAGGTGACCCAGGAGAGAAAGGGGAGAAGGGAGCACCTGGGAGACCTGGGAGAGTAGGGCCACCTGGAGAGCCAGGTTCCCCTGGAGTCAAAGGCCAAAAAGGTAGCACTGGACGCTATGGTAAGATGGGTCCCGCTGGACTCAAAGGTATAAAAGGTGATATGGGAGATCCAGGACCCAAGGGCCCAAATGGAGAGCCAGGCGTCCCCTGTGAGTGCGCACCCTTACGGAAAATGATCGGTGAAATGGATATTCAAGTGGCGCAATTAACCAATGAGCTGaagttcattaaaaatgCTGTCGCTGGCGTCAAAGAGACAGACAGCAAGGTCTATCTGCTGGTGAAGGAGGAAAAGCGCTACAGGGACGCGGAGGTGTTCTGTCAGGGGCGAGGGGGACACCTGGCTATGCCCAAAGACGCGGCGGCTAACAGAGCCATCGCTGGCTACGTCACCGCAGCTGGCCTCAGTCGAGTGTACATCGGCATTAATGACCTGGAGCGAGAAGGCCACTTTGTGTATGTGGAGCGCTCACCCATGTCCACTTTCAGCAAGTGGAGGGAGGGCGAGCCGAACAACGCTTACGGTGACGAGGACTGCGTCGAGATGGTGTCTTCAGGAGAGTGGATTGATGTGGCTTGTCACGTCACTATGTACTTCGTGTGTGAGTTTGACAAGGACACCGTATGAGCTTCACTACCAATCTAGAGGGTTTCGATCCCATTCCTCGCACCCCGCCGCTCtgcattttttgtatgtttctttttgttaacCCACCTGACTCTCGTTAGAAGAGGGCTCCGTGAATGAACTGTTTTCCCATCAACATGGTCCCTACACGGTGTTCGTTGTCCTCTACTACCTGAGCAGGGGAAAAGTTTACTTCACTTCGGAACATTAATTCACAGatttgtgcaataaataaacGAATATGATTTCACTTACGTCTCGCTAAAGACGAGTCACTCGTATAGTTTTGAATGGGGAAAAGCGCAaggtttaaaatggtttaaaagttAATCACAAGAAACCCCGCCTTCcaaataaaatagccaatcgcTGATCTGCGAAGTTATCCGCATCACCGCATCTGTCCTTAGAAGTTCCGGTTGCTATGGAAACAGTCAGCATTCTGAGACGTGTGAAACAACAATTATTGCACGGTTGTTGTTagatttcattggtgatttcaaatatgcaaTTTAATCATAAGCTTAGCGATCCGTTCGGGAGAATTCGATGTTTCCCAACACAAAGAGATAGGAGGTGCACTTGGATGCCCGAGAggcgtttcaaagatggccgccgagTGACATGATttgtcttaaagagactttgGTCTCGCACACTTCAATGCACTGTGAATGGAATGTGGATCCAGTTGTGTGCACTTCGTAGGGCACATACGTTCGAATAGAAGAAACGTTTGAAGCGACAAGAGATGCGTACAAAATGAGCAGAGCGGTGGGGCGCGAGGACTGGAGTTGAGAATCGCTGCTATGGGGGAAAAGTCCATTTAGACATGTTTATAACACTCTGGGTTAATGTAAATGCAGTACTCCTACATTTTGTCATCTTTGGCAACGCTGACAGCAGTGTGACATGCAAGGCGTCACGTAAAGccgtttaaaacaacatttaattattatgattatacacAGCAGTCCcaaagtttagggtcagtaaggTTTTGGCTGTTTTAAGCACtcaccaaagctgaatttatttgatcagttaGCAGCTAGCAGTTAAACGTCACTCTTTAGCGTCacatgcttcagaaatcattcttacaAGCTGaattgctgcttaagaaacatttcttattatcagtatATGTATCAATGttcaaaagtacagcattttataaaaaaagatgaatgtaTTCACTATCTTGTTGTTTAAAACTGTATATCAATTGATAGACTTTATGAaaggtactttttaaaatgtttcttttgtttaatcACCCTGCAGGAATATATGTTATACAGATCTGTTAACATGCAAACTATTCACtatttactgttaaatattCACTCTTTCTTACTACTTTCTGTTTTACCTTTCTTCCCAATTCAGATTTGAATTACttagtttattattagtttcCCGAATAGGATTAGCGTACTTACAGAACTAGCAAACAAGAGTAGATTTACGTAACACAGTCTTCTAGACTGTATGGTTGAGGTTAGAAACTAATGGgcagacattttattctccccagtaaaatgactgaaatggcTGTCCCAGTTTACCAGTAGTGCATCTTcccatttatttaatgcattataggCAGAATGGAACAGTGTCAAGGTGACGTAAGGATCAATAGATggtattatattgtatatgcCCATCATATTAAGTCGTTTTATAACCTTGCCAGGTCAATAGATGACCGAGCGTACACACGCATAGAATACAGTA

Function

symbol description
colec11 Predicted to enable several functions, including calcium ion binding activity; calcium-dependent carbohydrate binding activity; and monosaccharide binding activity. Involved in developmental process. Acts upstream of or within neural crest cell migration. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular space. Is expressed in head; hindbrain; liver; pronephric duct; and pronephric glomerulus. Human ortholog(s) of this gene implicated in 3MC syndrome 2. Orthologous to human COLEC11 (collectin subfamily member 11).

NR:

description
collectin-11 isoform X2

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0005581 collagen trimer cellular_component
GO:0005537 mannose binding molecular_function

KEGG:

id description
K10066 COLEC11; collectin sub-family member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263804.1 False 2727 mRNA 0.44 8 14735161 14740173
XM_043263805.1 True 3314 mRNA 0.43 7 14735161 14740548
XM_043263806.1 False 3289 mRNA 0.43 7 14735161 14740541

Neighbor

gene id symbol gene type direction distance location
sox11a sox11a,LOC107752751,LOC107594691,LOC107679744 coding downstream 223498 14509772 ~ 14511663 (-)
LOC122361878 LOC107594701,LOC107679774 coding downstream 328485 14399105 ~ 14406676 (-)
LOC122361997 slc22a15,LOC107750851,LOC107717086,LOC107671142,LOC107553868 coding downstream 337376 14392403 ~ 14397785 (-)
rsad2 rsad2,LOC107752752,LOC107553276,LOC107707684,LOC107655310 coding downstream 525284 14206780 ~ 14209877 (-)
rnf144aa rnf144aa,rnf144a,LOC107752753,LOC107655314,LOC107553279 coding downstream 530580 14173271 ~ 14204581 (-)
senp6b LOC107752747,LOC107679785 coding upstream 102475 14843023 ~ 14849883 (-)
mapre3a mapre3a,LOC107594695,LOC107679788,LOC107666269,LOC107752746,LOC107741846,LOC108425644 coding upstream 110746 14851294 ~ 14860450 (-)
dpysl5a dpysl5a,dpysl5,LOC107741845,LOC107666251,LOC107752745,LOC107679787,LOC107594693 coding upstream 120788 14861336 ~ 14876524 (-)
dnmt3ab LOC107679796,LOC107752744,LOC107600869 coding upstream 140906 14881454 ~ 14924493 (-)
dtnbb LOC107600868,LOC107741848,LOC108425647 coding upstream 186618 14927166 ~ 14969227 (-)
LOC122361512 NA non-coding downstream 154293 14462125 ~ 14580868 (-)
G121069 NA non-coding downstream 278372 14451623 ~ 14456789 (-)
G121051 NA non-coding downstream 343119 14391384 ~ 14392042 (-)
G120989 NA non-coding downstream 646286 14088640 ~ 14088875 (-)
G120983 NA non-coding downstream 758935 13975747 ~ 13976226 (-)
G121096 LOC107752749,LOC107594711,LOC107666252 non-coding upstream 36338 14776886 ~ 14777109 (-)
G121123 NA non-coding upstream 50381 14790929 ~ 14792068 (-)
G121214 NA non-coding upstream 299175 15039723 ~ 15045366 (-)
LOC122361632 NA non-coding upstream 461148 15201696 ~ 15210544 (-)
G121269 NA non-coding upstream 533535 15274083 ~ 15274615 (-)
LOC122361652 LOC107679745,LOC107752800,LOC107594718 other downstream 1584 14709491 ~ 14733577 (-)
kidins220a id2a,id2,kidins220,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC107752760 other downstream 694950 13981547 ~ 14040211 (-)
LOC122361883 LOC107592775,LOC107752809,LOC100537549,LOC108433935,LOC107733136,LOC107674087 other downstream 1534469 13193177 ~ 13200692 (-)
G120660 LOC107752798,LOC107592762,LOC107697764,LOC107733171 other downstream 1914493 12817192 ~ 12820668 (-)
LOC122361973 LOC107592804,LOC107697765,LOC107752799,LOC107674033,LOC107733077 other downstream 1943292 12663239 ~ 12791869 (-)
myo6b myo6b,LOC107741840,LOC107594692,LOC107679792,LOC107600844,LOC107666253 other upstream 51638 14792186 ~ 14839813 (-)
ptgr2 ptgr2 other upstream 270278 15010826 ~ 15026415 (-)
crip1 crip1,LOC106611282,LOC107679815,LOC107594706,LOC107600860 other upstream 319445 15059993 ~ 15064678 (-)
crip2 crip2,LOC107594708,LOC107752734,LOC107679813,LOC107666262,LOC107741856,LOC107600859 other upstream 343270 15083818 ~ 15099957 (-)
pax9 pax9,LOC107679748,LOC107666242,LOC107741874 other upstream 657240 15397788 ~ 15406503 (-)

Expression


Co-expression Network