G124294 (cftr,LOC107583749,LOC107738689,LOC107596947,LOC107672176,LOC107708216)


Basic Information

Item Value
gene id G124294
gene name cftr,LOC107583749,LOC107738689,LOC107596947,LOC107672176,LOC107708216
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4181385 ~ 4182391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU183656
CATTCCATCTACTGCAATGCTGGTGGCAACGCACCACTGGAAGGTGCCTAGAATGAGCATTGCCAGGCATATGACGATACCAATCTCACCCGGTTTATCCTCTGTGGAATAACGTACACACATTCACATGAACCAACAAGCAAGTATAAACATCAAGAACAAGGCTGCTCACAGTGACCTCACTTCTACACTTCAAAGGCATTTTCCAAGCACTGCTCACAATTACCtcttaataaaatcaattgtCTGTAAAACCCACTAAATCTAGCGTTCACTGACTTTTTGGACCCACAGAGAACCGTCAAATAAACAGAGGCATCCGCACACTTAACATGCTCTACTGTTCATTTGGTTCACTCTTGCCTAGATACAGATGGAGAAGCGTTCTTACGGTTGGTTCCTACCGCAATCCAGGCGGTCAGTGtgaaaaagaacacaaagaTGATATCGGAGCGGAAGAGGAACCATCGCAGAGTCGATAGGTAGAGGAACCAGGTAGCCGTGTGAGTGTTCAGGGTCTTGTGGAACAGGTTCTCAAAGTAGGCTTGCCGCTCAAAGGCCCTGATGGTCCACAAACCCTTCAGCGAGATGATGAGGTGGGAGAAAATGGGGCTACGAGCTGAAGAATAAAAGATGACAACAGTGCATATTCAATTTGAAGTCCTCTAAAGAAATACAATAGtacaataatgcattaatttgtatgatgaaaaatgcaaaaagaggCATTCAGGTCATTCCTACTGTAGAACCCAAATCAATCTTCATTTTGGTATATGGGCCACTTTTAGGACGATTTTTGCAGCTCGACACCACCcatctttatataaaattaataatttaggaTTCTAATTAATATGTTATTCAGCAAGgcataatgttacaaaacaattctgttacaattaaatattttaatatttgaactgTTTGAAAAAGGTTGgaactttcttttcaaaaaagtaacactgttttcacaaaaaatgtaGCAAGAATGTAGCACAATGTTT

Function

symbol description
cftr Enables ATP binding activity; ATP hydrolysis activity; and chloride channel activity. Acts upstream of or within several processes, including Kupffer's vesicle development; germ cell migration; and regulation of neutrophil chemotaxis. Located in apical plasma membrane. Is integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; digestive system; forerunner cell group; head; and pleuroperitoneal region. Used to study cystic fibrosis and diabetes mellitus. Human ortholog(s) of this gene implicated in several diseases, including alcoholic pancreatitis; allergic bronchopulmonary aspergillosis; bronchial disease (multiple); congenital bilateral absence of vas deferens (multiple); and lung disease (multiple). Orthologous to human CFTR (CF transmembrane conductance regulator).

NR:

description
PREDICTED: cystic fibrosis transmembrane conductance regulator-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183656 True 1007 lncRNA 0.40 1 4181385 4182391

Neighbor

gene id symbol gene type direction distance location
cttnbp2 cttnbp2,LOC107660942,LOC107583748,LOC107672177 coding upstream 4267 4136996 ~ 4177118 (+)
synm synm,LOC107738686,LOC107660941,LOC107596944,LOC107583746 coding upstream 57681 4114968 ~ 4123704 (+)
igf1ra igf1ra,LOC107596941,LOC107672255,LOC107738680 coding upstream 73187 4028238 ~ 4108198 (+)
anpepa LOC107738684,LOC107694949,LOC107596937 coding upstream 166844 4007475 ~ 4014541 (+)
si:dkey-12e7.1 si:dkey-12e7.1,LOC107583743,LOC107738678,LOC107596938,LOC103035474,LOC108427511,LOC107694948,LOC105904526 coding upstream 175816 4002956 ~ 4005569 (+)
asz1 LOC107660944,LOC107596949,LOC107672320,LOC107708231,LOC107583750 coding downstream 17990 4200381 ~ 4213997 (+)
wnt2 wnt2,LOC107708232,LOC107738769,LOC107660945,LOC107596948,LOC106561551 coding downstream 33030 4215421 ~ 4223120 (+)
bcl2l13 bcl2l13,LOC107738690,LOC107708230,LOC107686320,LOC107672257,LOC107583859 coding downstream 42389 4224780 ~ 4237212 (+)
dennd11 LOC107738692,LOC107708228,LOC107686315,LOC107672298,LOC107583753 coding downstream 64157 4246548 ~ 4253292 (+)
ighmbp2 ighmbp2,LOC107738695,LOC107596955,LOC107708224,LOC107583861,LOC107672301 coding downstream 74629 4257020 ~ 4263711 (+)
G124293 cftr,LOC107596947,LOC107738689,LOC107708216,LOC107672176,LOC107583749 non-coding upstream 96 4180426 ~ 4181289 (+)
G124292 NA non-coding upstream 2029 4179040 ~ 4179356 (+)
G124161 NA non-coding upstream 45785 4135383 ~ 4135600 (+)
G124160 ttc23,LOC107596946,LOC107738760,LOC107660940,LOC107672178,LOC107583747 non-coding upstream 46799 4134078 ~ 4134586 (+)
G124158 NA non-coding upstream 54612 4126369 ~ 4126773 (+)
G124295 NA non-coding downstream 342 4182733 ~ 4183651 (+)
G124427 NA non-coding downstream 279454 4461845 ~ 4462124 (+)
G124425 NA non-coding downstream 294156 4476547 ~ 4477879 (+)
LOC122323045 NA non-coding downstream 505643 4688034 ~ 4691944 (+)
G124497 NA non-coding downstream 562369 4744760 ~ 4745307 (+)
nrn1la LOC107726468,LOC107694939,LOC107583849,LOC107596927,LOC107733575,LOC107672183 other upstream 437629 3719888 ~ 3743756 (+)
tmem170a tmem170a,LOC107596918,LOC107583727 other upstream 626695 3511957 ~ 3554690 (+)
chd2 chd2,LOC107690375,LOC107715217,LOC107693036,LOC107715589 other upstream 1719595 2410733 ~ 2461790 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other upstream 1862245 2301758 ~ 2319140 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other upstream 1941125 2207199 ~ 2240260 (+)
LOC122322928 megf11,LOC107596974,LOC107686294,LOC107672222 other downstream 577237 4759628 ~ 4795836 (+)
G124548 NA other downstream 889254 5071645 ~ 5110633 (+)
G124553 NA other downstream 957099 5139490 ~ 5140671 (+)
G124577 NA other downstream 1043417 5225808 ~ 5226057 (+)
G124580 NA other downstream 1046172 5228563 ~ 5229946 (+)

Expression


Co-expression Network