XLOC_006738 (CU019663.1)


Basic Information

Item Value
gene id XLOC_006738
gene name CU019663.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32793864 ~ 32807641 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012971
CCCGCAGCAGCTCTGGCCCGTAGCAGAACGAAGATCTGCGGGAACTTCAGcaccatacacacaaacagaGTGCTGAAATTCGCCACATGAAGGCTCAGATTCCCGTCCATCTCTGTCTCCTCCAGAGTCCTGCGCCTTTAATCCAGCTCTGTGAATCTGATCCTGGCTGCTGGCACCGAAGAGTCCCAGCTGTTACCATCGGCACTTCCGCACACATCAGCGCGCGAGATTTGACCCTCTACAGCGCCCGTACAGCTCGACTGAGGGATGCTGCTACTACAATGCTTCTCTTATTTCTGAAGACAACAGGTCGTTATTTGAAAACAGGGCATCTTTATTGAACTTTCCTTCAGCTGagGTTACAGCCCTCTGGATCACTAGCTGTTGCCGGGAGCGATGACTGGTCGTAAGATCAATGACTCCATCTGCTGGTGTGTCTTTATTGTTTGGAAGTGTTCCATCATTTCCTGGTCTGTCACCTGACCGCTGCGGATTAAATGGTATGGGCACTGGTATGGGTATGGGGACTGGCAATGGCACAATCACTGGATAGGGCACTAATAACGTTGGTGGAGGCACTAAGGGGGCCAGAGAAGGCATGCCAATATTCATAATAGGTGGAACTGGGATGGGACCAGATGGCATCATGTTAACTGGGGGGAAAGGCAAGCCTGGCATGTGGGCAGCAGGGTGAGGGGGCATTATACCTGGAGGGTTCCCAGAAAGGGTTGGGGTAGAGGAAGGGTGTAAATGGGGGGAAAGGAGTGGGCGATGCATGGGGCTTGATGGAGGACACAAAGTCCGTGGAGGTGGTGGTGGCCCAATGCCAGGAATCATGGGATTGGAATGAGGGCTGTTTGGGCCTGGTGGGCGTAGAAACGGAGGGCGCATCTGCTGCATCATCTGGTGCTCCATGAAGATAGGGAAAGGAACTGGGCCTCGAGGTGTCATGACCATAGGTGGGCTGCCGGGTGGCATACCCAGAGCTGGATGTAGCCCTGATATAGATGGTGGATGAGGTGGCGGTAAAGAAGGGCTTTCGTGTGGCCGCGGTGTGGGTATTTtcgttgatgatgatgatgaagatgatgaggacGATGAGGAACACACAGTTCCAGCTTCAGATGGTGACCCTGACGTGGATCCAGAAGGTCCAGCTATAGTGGCACCCACTGGTGAAGGTGCCTTTCGACTGCGGAGCTCACTCAGAGGTGCACTCCAGGACTCAGGTGTAAGGAGCTGTACACCCGCACCGCTCTCTGATTTTGTATCACTGGTGGGGAGAGGAGGGTTACACAAACCCCCTGGCAGAGCAGCCTGAGTCTCTTTATAGAATATGTCCATCTTATATTGGTTCAGACACTTAGCACTGCAAAACTGAAGCCTCCTCTCACCAGCTCCAAAATCCAGGTATTCCTTAGTGTGGCGGATGTGTTTGCACCAATCACAGACCTGCAATTTGAACAACCACAAAGTAAACATTATAAACAAAAGACTCATAGTTTACAGCTTATATTTTAAAGCACACAAATTTGAAACCAAACACTCGCCTTGGAT

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0004518 nuclease activity molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0004540 ribonuclease activity molecular_function
GO:0140098 catalytic activity, acting on RNA molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100616

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012971 True 1557 lncRNA 0.52 3 32793864 32807641

Neighbor

gene id symbol gene type direction distance location
XLOC_006737 pdss2 coding downstream 67686 32660544 ~ 32726178 (-)
XLOC_006736 bend3 coding downstream 145448 32641540 ~ 32648416 (-)
XLOC_006735 matn3b coding downstream 157979 32627444 ~ 32635885 (-)
XLOC_006734 wdr35 coding downstream 167617 32580382 ~ 32626247 (-)
XLOC_006733 kcns3a coding downstream 216478 32575777 ~ 32577386 (-)
XLOC_006739 rock2a coding upstream 7600 32815241 ~ 32899322 (-)
XLOC_006740 si:dkey-18j18.3 coding upstream 93717 32901358 ~ 32906306 (-)
XLOC_006741 NA coding upstream 139070 32946711 ~ 32996496 (-)
XLOC_006742 rbm25a coding upstream 189379 32997020 ~ 33009734 (-)
XLOC_006743 rbm25a coding upstream 209920 33017561 ~ 33022372 (-)
XLOC_006471 BX537274.2 misc downstream 22528959 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 31967639 825904 ~ 826225 (-)
XLOC_006731 NA non-coding downstream 226608 32457931 ~ 32567256 (-)
XLOC_006732 NA non-coding downstream 298992 32492067 ~ 32494872 (-)
XLOC_006730 NA non-coding downstream 337871 32069898 ~ 32455993 (-)
XLOC_006729 BX470107.1 non-coding downstream 730848 32023488 ~ 32063016 (-)
XLOC_006728 NA non-coding downstream 794852 31983061 ~ 31999012 (-)
XLOC_006752 NA non-coding upstream 453490 33261131 ~ 33301170 (-)
XLOC_006757 NA non-coding upstream 644797 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 649882 33457523 ~ 33459318 (-)
XLOC_006768 BX649403.1 non-coding upstream 1830988 34638629 ~ 34638746 (-)

Expression


Co-expression Network