CI01000001_01637015_01638058 (FAM43B)


Basic Information

Item Value
gene id CI01000001_01637015_01638058
gene name FAM43B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1636695 ~ 1638058 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01637015_01638058.mRNA
CGTATGCCAGAGCAGTTTCCTTTGCTGTGCTTCTCTGAGAAACACACACACAATTACTGGTTGGAGGAGAGTGCTGAATCCTTTTCTCTCTCTGCTTGGATCATGCTGCCCTGGAAAAGGAGTAAGTTTTTGCTGGTGGAGAATGAGTCCAAAAGCAAGCCAAAAAGTCTTGGAGCCGGGCTGACCTACCATTCTTTGCTGTCGACTTTGCTCCACTCTTGTCCGGACCTCGTTCCTGACTGCCCGTTCCAATGGCTGGGGAGCGTCTTCCACAGCAAACGGCAGAAAGTGGAGCTCAATAAAGAGGAACCCACCTACAAGGTGCGTTACCTGGGCAGCGCGGTCACCATCATGGCTAAAGGTGAGGACTGCACGCAGGAGGCGGTGGCCAAGATTTGGACTCGCAGCAACTACGGCGAACAGAGCGCCAAGATGAAGCTCACCGTCGGGCCCCATGGCATCCGCATGGGGGCGGATAGAGGTGGCAAAAAGAAGCCCGTCCACCTCTATTCCCTCAACCGCATCACATACTGCACAGCTGACCCCTTTCGGCCCAAGATTTTCGCTTGGATTTACAGGCATCAGGTAAAGAATAAAGCAGTTGTGCTACGCTGCCATGCTGTCCTGTTGCCAAAGGCGGAAAAGGCCAGAGCGTTAGCGCTCAGCCTGTACCAAAACTCAACGTCCGCATTCACGGAGTTCAAGCGACTAAAGCGCCAATCTGACTTCCGTCATTGCCAGCAGCAGCTGTTGGGCGAAGACATTGTGCCTCTTATGCCTCTTCGGAGACTCCTAAATGGCCAATGCCACTACCAGCCACCTACAGAAAAGCCTGGGAGTGCCACACGGCTCTCCTCGATTACTGAGGAAGAGGAGGAGGAGGAAGACCGACAGGGGGATGCGCAATCCAACACCAACACGACAAACGCCGGAACATCCAGTCCCCCTCCAGAGAAAGATCTGGGGAAGATCGTAAATAGACTAGACGAGGTTTCGATTACCAGCTGGGATGAAGCACAGATGACTATCAGCACTCTGGTGTGAGGTCACACGGATACAGTTTAGCGCCCTCACCTTTAAGCCTCTGTCCTGTCGCCTTTCCTGCCAACCCACTCTGTCTGGTACGTCCATTGATGCACCGTGAAACAGCCCTCCGAATCTCGGGGTAAGGACCGTTGGCACCCGCGAATGCTGCCTGCAGAGGTTCCACGAGATGCATGGAGAAGGAGAGCCAGTACAAGCACAATACAAGGAGGACCACAGGTACACCAGTCATTCTGAGTTGGTTGAGAGCTTACACCGAAAAGCCTTTATCTACCCCCGACATCGAGCAAAGCTTAAACTGCACACCAAAAAACAATAAA

Function

symbol description
fam43b Acts upstream of or within vasculature development. Is expressed in forebrain; somite border; and vasculature. Orthologous to human FAM43B (family with sequence similarity 43 member B).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01637015_01638058.mRNA True 1364 mRNA 0.53 1 1636695 1638058

Neighbor

gene id symbol gene type direction distance location
CI01000001_01582644_01584095 NA coding downstream 52255 1582644 ~ 1584440 (-)
CI01000001_01565290_01569360 PINK1 coding downstream 67335 1565290 ~ 1569360 (-)
CI01000001_01555180_01558113 AGMAT coding downstream 78582 1554301 ~ 1558113 (-)
CI01000001_01476453_01500640 NA coding downstream 135727 1475534 ~ 1500968 (-)
CI01000001_01421483_01453330 NA coding downstream 183365 1420930 ~ 1453330 (-)
CI01000001_01707363_01743870 VWA5B1 coding upstream 69031 1707089 ~ 1743870 (-)
CI01000001_01757774_01758445 NA coding upstream 119131 1757189 ~ 1759443 (-)
CI01000001_01760676_01761671 CPTP coding upstream 122108 1760166 ~ 1761671 (-)
CI01000001_01772744_01773670 NA coding upstream 134273 1772331 ~ 1773670 (-)
CI01000001_01873684_01874535 NA coding upstream 235582 1873640 ~ 1874535 (-)
G13582 NA non-coding downstream 60498 1556243 ~ 1576197 (-)
G13619 NA non-coding downstream 225044 1411444 ~ 1411651 (-)
G13618 NA non-coding downstream 225539 1410887 ~ 1411156 (-)
G13415 NA non-coding downstream 377802 1258524 ~ 1258893 (-)
G13410 NA non-coding downstream 383402 1252995 ~ 1253293 (-)
G13670 NA non-coding upstream 10004 1648062 ~ 1648288 (-)
G13671 NA non-coding upstream 11134 1649192 ~ 1649430 (-)
G13656 NA non-coding upstream 22197 1660255 ~ 1660709 (-)
G13674 NA non-coding upstream 28366 1666424 ~ 1667059 (-)
G13678 NA non-coding upstream 37748 1675806 ~ 1676078 (-)
CI01000001_00362143_00378213 NA other downstream 1239562 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1379178 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 1501770 122814 ~ 131380 (-)
G14104 NA other upstream 125611 1763669 ~ 1771468 (-)
G14219 NA other upstream 356152 1994210 ~ 1994898 (-)
G14228 NA other upstream 417916 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 621331 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2754256 4392314 ~ 4399804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021893 fam43b coding NC_007134.7 CM002907.2 37323962 ~ 37325961 (+)