G126716 (homer2,LOC107569981,LOC107703939,LOC107595365)


Basic Information

Item Value
gene id G126716
gene name homer2,LOC107569981,LOC107703939,LOC107595365
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16267014 ~ 16364205 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU187083
tggagaaagaaagaaacactcAGCTGAGTCTCAGAATTCAAGAACTGGAAGCAGATCTGCAGGAAAAAGAACAGGAGCTGGAGGATCTGCGCAAACAGGCAGAAACCATCCCACAGCTTATGGCCAAATGTGAAAGTGTCTCGGTCAAACTACAGGCTGCAGAAACGGCCAACAGGGACCTGAGTGAGAAGATGACACTCCTGCAGAGCGAGATCGACGACAGCGAGCAGAAACAGAAGAACATGAAGAGCGAGCTCAAGAAGTTCATGGACGTTCTGGACGGGAAGATTGATGAGCTCCATGAAGTTCGTCAGGGCATTTCTAAACTGGGCGTCGataactgaacacacacacacacacacacacacacacacacacacacNaccctctctctcacactcatactcacatacactctctctctctctctgtctctctctctctctctctctctctctctctctttctctttcactggGCTCCTGtcccgtgtgtgtttgtgatcttTTGACTGATGGTTAAGGGCTACTGATGGTCAGCGAggagcttctctctctctctctctcacacacacacacacacacagactgaaagGTAAATTTAACCGCTGCAGATCTCAGGGCCGTTCAGATTGCTGATATGCACAAACACAGGTGAACTGCAGAATCACTAAGTGCCTGATGGTGGCGCTCTCTCTCCGCCAGCCCTCATAAACTCTTCTGACAATCGTCCTGTTTAACGCAAGGCGTCGAGCGGCTCCTCATGCAATACCCGCCTCAGGCTGCAGGACGcacttctcttcttcttcttcttcttcttctgcttcttctgttggtttgttttgtgtttttgagagTCACATTCAGATTATTCTTATTCTGATTGCTGAAAATATGAGCCAAATATCTGCTGTGATGAAGGCAGTTTGCTTGTTCGGTGCAGATGTGTGTGTCGTGCTCAGCAGTGTTTGTGATGTGCTCCTCCgcttgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgacgtttGGTAGATGGGATAATTTATACGTGTGCTTTTTTTAGAATAATCTCTGCCTTTCCTGAGTCTGTGATCAGAGTGCTTGAGCTTCCAAACTCTCTCCTCAGTTcctttcagttgttgttttcttgATGCTGTTTGAATGCTGTGGATGGTGTATTATGTGTTTAATGTGGGCAATTGTCTTGAACAccctctaaaacacacacacacacacacaccttactgAAACTTGAgccttttttccctctttctggaaagaaaaacttttgttgatcaaaattgtaaaataaaaaattgtggaAATCTAGTTTCTGAAGGA
>TU187084
tggagaaagaaagaaacactcAGCTGAGTCTCAGAATTCAAGAACTGGAAGCAGATCTGCAGGAAAAAGAACAGGAGCTGGAGGATCTGCGCAAACAGGCAGAAACCATCCCACAGCTTATGGCCAAATGTGAAAGTGTCTCGGTCAAACTACAGGCTGCAGAAACGGCCAACAGGGACCTGAGTGAGAAGATGACACTCCTGCAGAGCGAGATCGACGACAGCGAGCAGAAACAGAAGAACATGAAGAGCGAGCTCAAGAAGTTCATGGACGTTCTGGACGGGAAGATTGATGAGCTCCATGAAGTTCGTCAGGGCATTTCTAAACTGGGCGTCGataactgaacacacacacacacacacacacacacacacacacacacNaccctctctctcacactcatactcacatacactctctctctctctctgtctctctctctctctctctctctctctctctctttctctttcactggGCTCCTGtcccgtgtgtgtttgtgatcttTTGACTGATGGTTAAGGGCTACTGATGGTCAGCGAggagcttctctctctctctctctcacacacacacacacacacagactgaaagGTAAATTTAACCGCTGCAGATCTCAGGGCCGTTCAGATTGCTGATATGCACAAACACAGGTGAACTGCAGAATCACTAAGTGCCTGATGGTGGCGCTCTCTCTCCGCCAGCCCTCATAAACTCTTCTGACAATCGTCCTGTTTAACGCAAGGCGTCGAGCGGCTCCTCATGCAATACCCGCCTCAGGCTGCAGGACGcacttctcttcttcttcttcttctgcttcttctgttggtttgttttgtgtttttgagagTCACATTCAGATTATTCTTATTCTGATTGCTGAAAATATGAGCCAAATATCTGCTGTGATGAAGGCAGTTTGCTTGTTCGGTGCAGATGTGTGTGTCGTGCTCAGCAGTGTTTGTGATGTGCTCCTCCgcttgtgtgtgcgtgcgtgtgtgtgtATGAACTGAACTGGATAAgcttttatttggaaacatgtaaataaactaCAGTGCAAACATTTATAAGTGCTAAACAA

Function

symbol description
homer2 Predicted to enable G protein-coupled glutamate receptor binding activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in synapse. Is expressed in musculature system; periderm; and somite. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 68. Orthologous to human HOMER2 (homer scaffold protein 2).

NR:

description
PREDICTED: homer protein homolog 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187083 True 1341 lncRNA 0.46 4 16267014 16348903
TU187084 False 1081 lncRNA 0.47 5 16267014 16364205

Neighbor

gene id symbol gene type direction distance location
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 148252 16115991 ~ 16118762 (+)
LOC122362747 kifc3,LOC107670565 coding upstream 151170 16090090 ~ 16115844 (+)
LOC122362951 cngb1a coding upstream 181600 16075471 ~ 16085414 (+)
LOC122362746 cngb1a,LOC107670565,LOC107679572 coding upstream 191590 16063967 ~ 16075424 (+)
zgc:158464 LOC107572397,LOC107740353,LOC107692470,LOC107599765,LOC107711356 coding upstream 228103 15955905 ~ 16038911 (+)
zgc:158482 LOC107727401,LOC107703947,LOC107569985 coding downstream 47160 16411365 ~ 16419019 (+)
slc27a2a NA coding downstream 55989 16420194 ~ 16426174 (+)
usp8 usp8,LOC107595392,LOC107715249,LOC107665382 coding downstream 78275 16442480 ~ 16452118 (+)
mibp2 mibp2,LOC107713061,LOC107690135,LOC107710817,LOC107663471,LOC107595359,LOC107595360,LOC107097782,LOC107381735 coding downstream 137729 16501934 ~ 16504465 (+)
slc30a4 slc30a4 coding downstream 149965 16514170 ~ 16522683 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding upstream 55431 16208584 ~ 16211583 (+)
LOC122362955 NA non-coding upstream 208040 16058534 ~ 16058974 (+)
G126626 NA non-coding upstream 263196 15999452 ~ 16003818 (+)
G126605 NA non-coding upstream 438661 15825427 ~ 15828353 (+)
G126591 NA non-coding upstream 446684 15760963 ~ 15820330 (+)
LOC122362848 NA non-coding downstream 12233 16376438 ~ 16378666 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding downstream 41250 16405455 ~ 16406624 (+)
G126723 NA non-coding downstream 89792 16453997 ~ 16494634 (+)
G126755 NA non-coding downstream 98587 16462792 ~ 16463512 (+)
G126726 NA non-coding downstream 127328 16491533 ~ 16493553 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 211387 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 313361 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1219121 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1356857 14906616 ~ 14910157 (+)
gemin7 NA other upstream 1438722 14826788 ~ 14828292 (+)
G126820 NA other downstream 389504 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 709989 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 765717 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 939564 17303769 ~ 17309158 (+)
G127098 NA other downstream 1046480 17410685 ~ 17411593 (+)

Expression


Co-expression Network