LOC122362750 (homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825)


Basic Information

Item Value
gene id LOC122362750
gene name homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16263839 ~ 16271267 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU187112
GCGATCATCAACAGCACCATTACTCCTAATATGACCTTCACGAAGACGTCACAGAAGTTCGGCCAGTGGGCGGACAGCAGGGCCAACACGGTGTATGGCCTCGGGTTCGCCACGGAGCAGCAGCTGCAGCAGTTCTCGGAGCAGTTTAAAGAGTTTAAGGAGGCTGCGCGGCTCATCCGAGACAAATCACAGGAGAAGTTTGAGTTGCTGAGTCCAGGCCTAAACATCTCTTCTCCACAGGTAAACACAGCAACTCGCATTTAACTTCAGCTAAACCTTTCGCGAGCGTGACAGAACGGG
>XM_043264312.1
ATGGGCCGGATGAAACCAAATGACCGACTTTATTCAATCATTTCTGCTTCAAACGAGATATTCGCCGAAGCCTGCATGCATCGTGATGAAGCCGTGTTCTGCATCGTGCTCGtcaaagacagaaataaaataaagATCGACCCGGCCACTAAACGAAACTGGATTCCCGCCAGCAAGCACGCCGTCACTGTCTCCTTCTTCTACGATGCCGGCAGGAGCGTGTATCGCATCATCAGCGTAGGGGGCACTAAGGTGAGAGACCTCATCTCGATCATCAACAGCACCATTACTCCTAATATGACCTTCACGAAGACGTCACAGAAGTTCGGCCAGTGGGCGGACAGCAGGGCCAACACGGTGTATGGCCTCGGGTTCGCCACGGAGCAGCAGCTGCAGCAGTTTCAGTTTGCTGAGAAGTTTCAGGAAGTCAAAGAAGCTGCGAAACTGGCCAGAGAAAAATCTCAGGAGAAGATGGAGACGTCCAGCGATCAGTCGCAGGAATCTGGCCGTGAAACTCCATCAGGCAATCAAGCATCCAGCATCAATGGAACAGACGATGAGAAAATCTCACACGTGCCGGACACCACAGCGCTGAAGAGTGAGAACGACCGGCTGAAGTCTGTAGCGGAGCAGAGtaaGAAGCTGGAGACGGAGCTGCAGGCTCTGAAGGACAGCAACGCTCGACTGATGGACACACTGCAGGAGGCCAACAGCAGCGCAGAGAGCTGGAAGAGCAAAGTGACGCAGAGCCAGGACGAGAACAACCAGCTGAGGAACAAGGTGAGCAGAGATCAGCCTCgtgtgtgtNNNGTAAAtctggagaaagaaagaaacactcAGCTGAGTCTCAGAATTCAAGAACTGGAAGCAGATCTGCAGGAAAAAGAACAGGAGCTGGAGGATCTGCGCAAACAGGCAGAAACCATCCCACAGCTTATGGCCAAATGTGAAAGTGTCTCGGTCAAACTACAGGCTGCAGAAACGGCCAACAGGGACCTGAGTGAGAAGATGACACTCCTGCAGAGCGAGATCGACGACAGCGAGCAGAAACAGAAGAACATGAAGAGCGAGCTCAAGAAGTTCATGGACGTTCTGGACGGGAAGATTGATGAGCTCCATGAAGTTCGTCAGGGCATTTCTAAACTGGGCGTCGataactgaacacacacacacacacacacacacacacacacacacacNaccctctctctcacactcatactcacatacactctctctctctctctgtctctctctctctctctctctctctctctctctttctctttcactggGCTCCTGtcccgtgtgtgtttgtgatcttTTGACTGATGGTTAAGGGCTACTGATGGTCAGCGAggagcttctctctctctctctctcacacacacacacacacacagactgaaagGTAAATTTAACCGCTGCAGATCTCAGGGCCGTTCAGATTGCTGATATGCACAAACACAGGTGAACTGCAGAATCACTAAGTGCCTGATGGTGGCGCTCTCTCTCCGCCAGCCCTCATAAACTCTTCTGACAATCGTCCTGTTTAACGCAAGGCGTCGAGCGGCTCCTCATGCAATACCCGCCTCAGGCTGCAGGACGcacttctcttcttcttcttcttcttcttctgcttcttctgttggtttgttttgtgtttttgagagTCACATTCAGATTATTCTTATTCTGATTGCTGAAAATATGAGCCAAATATCTGCTGTGATGAAGGCAGTTTGCTTGTTCGGTGCAGATGTGTGTGTCGTGCTCAGCAGTGTTTGTGATGTGCTCCTCCgcttgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgacgtttGGTAGATGGGATAATTTATACGTGTGCTTTTTTTAGAATAATCTCTGCCTTTCCTGAGTCTGTGATCAGAGTGCTTGAGCTTCCAAACTCTCTCCTCAGTTcctttcagttgttgttttcttgATGCTGTTTGAATGCTGTGGATGGTGTATTATGTGTTTAATGTGGGCAATTGTCTTGAACAccctctaaaacacacacacacacacacacaccttactgAAACTTGAgccttttttccctctttctggaaagaaaaacttttgttgatcaaaattgtaaaataaaaaattgtggaAATCTAGTTTCTGAAGGAGA

Function

symbol description
homer2 Predicted to enable G protein-coupled glutamate receptor binding activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in synapse. Is expressed in musculature system; periderm; and somite. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 68. Orthologous to human HOMER2 (homer scaffold protein 2).
homer3 Enables identical protein binding activity. Involved in negative regulation of calcineurin-NFAT signaling cascade and negative regulation of interleukin-2 production. Predicted to be located in basal part of cell. Predicted to be active in several cellular components, including dendrite; glutamatergic synapse; and postsynaptic density.

NR:

description
PREDICTED: homer protein homolog 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187112 False 300 TUCP 0.53 2 16264758 16271267
XM_043264312.1 True 2166 mRNA 0.48 9 16263839 16269259

Neighbor

gene id symbol gene type direction distance location
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 145077 16115991 ~ 16118762 (+)
LOC122362747 kifc3,LOC107670565 coding upstream 147995 16090090 ~ 16115844 (+)
LOC122362951 cngb1a coding upstream 178425 16075471 ~ 16085414 (+)
LOC122362746 cngb1a,LOC107670565,LOC107679572 coding upstream 188415 16063967 ~ 16075424 (+)
zgc:158464 LOC107572397,LOC107740353,LOC107692470,LOC107599765,LOC107711356 coding upstream 224928 15955905 ~ 16038911 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding downstream 58442 16329709 ~ 16334460 (+)
homer2 homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443 coding downstream 66778 16338045 ~ 16348905 (+)
LOC122362844 fsd2,LOC107726333 coding downstream 90978 16362245 ~ 16368810 (+)
zgc:158482 LOC107727401,LOC107703947,LOC107569985 coding downstream 140098 16411365 ~ 16419019 (+)
slc27a2a NA coding downstream 148927 16420194 ~ 16426174 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding upstream 52256 16208584 ~ 16211583 (+)
LOC122362955 NA non-coding upstream 204865 16058534 ~ 16058974 (+)
G126626 NA non-coding upstream 260021 15999452 ~ 16003818 (+)
G126605 NA non-coding upstream 435486 15825427 ~ 15828353 (+)
G126591 NA non-coding upstream 443509 15760963 ~ 15820330 (+)
G126722 whamm,LOC107595364 non-coding downstream 83964 16355231 ~ 16361646 (+)
LOC122362848 NA non-coding downstream 105171 16376438 ~ 16378666 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding downstream 134188 16405455 ~ 16406624 (+)
G126723 NA non-coding downstream 182730 16453997 ~ 16494634 (+)
G126755 NA non-coding downstream 191525 16462792 ~ 16463512 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 208212 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 310186 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1215946 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1353682 14906616 ~ 14910157 (+)
gemin7 NA other upstream 1435547 14826788 ~ 14828292 (+)
G126820 NA other downstream 482442 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 802927 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 858655 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 1032502 17303769 ~ 17309158 (+)
G127098 NA other downstream 1139418 17410685 ~ 17411593 (+)

Expression


Co-expression Network