G126743 (gatm,LOC107726335,LOC107665388)


Basic Information

Item Value
gene id G126743
gene name gatm,LOC107726335,LOC107665388
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16405455 ~ 16406624 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU187126
cTTGACCTCCACGGTGAACGGGGGGACGCAGGCGTTCTCGGCTCTCCCTACGATCACCTCCTCGAGCGGGTCCCACTCGTTGTGCGCGCACACGGGGCAGTCCTCGGGCGTGTGCTCGGTAACCGGCTCGTCCGCGGTGAGCGGGAGCGCGGCGGCGGAACTCGAGGTGCTGCGGAACGCGCGCGACACCCATCCCGACACCGCGCGACCCACCTGAGAGAAACAACGACAGAGCAAAGAGAACAATACAAGAGCGAGCTGCGGAGCCCCGAAGAGGACAAAACAGGCAAAAATGAATCCCGACAGATCACAGTCTGTGACGGAAGACTTCATCAGGAGTGAATTAAATGGATGACACGCCTGCTGTCGCGCAGTGATCGCGGTAATAAAGCTGATATACAGCAGTGTCCGTGTTCCTGGAGTTTCTGATCCCTGATCGTTACAGCTGTGCTGTCAGTCACTCATAACACATGATCTCCAGCTCCGAGCTGATCATCAGGACGAACAGGGTTATTATAATGTCAGAATGCATTCAGGAGTTTAACGCAACAAAcgatcttttttttaatgataacatCAGTCAGCTTTTATAATTATGATGGCATGTGTGAGTTTCTGAGAATGCATTACATAAGACTCtcatcactctctctctctcacacacacacacacacacacacacacgcgcgcgcgcggcTTGACTCTCTAAAGATCCGCGTAAACGCGCGATATTCACCATAGCGCCGATCAGATGCGCGGCTTCAGCTCCGCGGCTCCCTCCTCTCAGGCATCGCACTCGCAGCATGTCGCTCTGGTTCTGGCTCTGGTTCTGATTCTGGACTGAAGCTCTCAGGCATGCAGCAGCAGTTCTGATCCGGGGAAGTAGGAGAGGC

Function

symbol description
gatm Predicted to enable glycine amidinotransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; mesoderm; musculature system; ovary; and yolk syncytial layer. Human ortholog(s) of this gene implicated in AGAT deficiency and Fanconi renotubular syndrome 1. Orthologous to human GATM (glycine amidinotransferase).

NR:

description
PREDICTED: glycine amidinotransferase, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187126 True 893 lncRNA 0.55 2 16405455 16406624

Neighbor

gene id symbol gene type direction distance location
LOC122362844 fsd2,LOC107726333 coding upstream 36645 16362245 ~ 16368810 (+)
homer2 homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443 coding upstream 56550 16338045 ~ 16348905 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding upstream 70995 16329709 ~ 16334460 (+)
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 286693 16115991 ~ 16118762 (+)
LOC122362747 kifc3,LOC107670565 coding upstream 289611 16090090 ~ 16115844 (+)
zgc:158482 LOC107727401,LOC107703947,LOC107569985 coding downstream 4741 16411365 ~ 16419019 (+)
slc27a2a NA coding downstream 13570 16420194 ~ 16426174 (+)
usp8 usp8,LOC107595392,LOC107715249,LOC107665382 coding downstream 35856 16442480 ~ 16452118 (+)
mibp2 mibp2,LOC107713061,LOC107690135,LOC107710817,LOC107663471,LOC107595359,LOC107595360,LOC107097782,LOC107381735 coding downstream 95310 16501934 ~ 16504465 (+)
slc30a4 slc30a4 coding downstream 107546 16514170 ~ 16522683 (+)
LOC122362848 NA non-coding upstream 26789 16376438 ~ 16378666 (+)
G126716 homer2,LOC107569981,LOC107703939,LOC107595365 non-coding upstream 41250 16267014 ~ 16364205 (+)
G126722 whamm,LOC107595364 non-coding upstream 43809 16355231 ~ 16361646 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding upstream 193872 16208584 ~ 16211583 (+)
LOC122362955 NA non-coding upstream 346481 16058534 ~ 16058974 (+)
G126723 NA non-coding downstream 47373 16453997 ~ 16494634 (+)
G126755 NA non-coding downstream 56168 16462792 ~ 16463512 (+)
G126726 NA non-coding downstream 84909 16491533 ~ 16493553 (+)
G126779 NA non-coding downstream 102999 16509623 ~ 16525107 (+)
G126766 fgf7,LOC107663468,LOC107663467,LOC107739939,LOC107574045,LOC107595354 non-coding downstream 146951 16553575 ~ 16559719 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 134188 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 349828 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 451802 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1357562 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1495298 14906616 ~ 14910157 (+)
G126820 NA other downstream 347085 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 667570 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 723298 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 897145 17303769 ~ 17309158 (+)
G127098 NA other downstream 1004061 17410685 ~ 17411593 (+)

Expression


Co-expression Network