G126813 (slc24a5)


Basic Information

Item Value
gene id G126813
gene name slc24a5
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16719496 ~ 16720130 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU187247
tgtgtctgtaaagacattatatatatatatatacattttaaatcctattttttgctttactttttttactattttttatagaAAGGCATAtgtgaatgtgattaatcatttgacagcactaatataaagtTAATAGTCAATTTTAAAGAGCATAGAATGGGTTTTATGTGAATGTGTTATTCTTTAAAGTGAATGTTTTATGAAACTGAGGTCAAAAGCATTCTTCGTGGACCACCGTTGGACGCCGATGGGTTTGAGGTCGCACTGAAAGAAAAGTCCCAAGCTTTGGTTTTTGTCCCTTCTCTGTCCGTCAGTCTCCGCAGGCTCGGATGGGATTGTTCCCGATGATCCCGAGCTCGTAGAGGATGGACAGCGTGGCGAAGAGCACGTAACACCCGAGAGACACCAGCCCCAGCTTCCAGTCCAGCTTCCAGCCGTTGACGTGAACCGCCACGAAGAGGAAGACGATGGAGAGCAGCAGCGTGCAGGACATGAAGACCAGACCTCTGCTGTTGACCTCCACCGGAGAGCCGGGGTCCACAAACACCGTCTTGATGAACCACGGCAGACCCAGACACAGCATGTCGAAGACGTTCGAGCCCACGATGTTAGACATGGCCATGTCGGCTTTACCT

Function

symbol description
slc24a5 Predicted to enable calcium, potassium:sodium antiporter activity. Acts upstream of or within melanocyte differentiation and melanocyte migration. Predicted to be located in membrane and trans-Golgi network. Predicted to be integral component of membrane. Is expressed in female organism; male organism; melanocyte; and presumptive retinal pigmented epithelium. Human ortholog(s) of this gene implicated in oculocutaneous albinism type VI. Orthologous to human SLC24A5 (solute carrier family 24 member 5).

NR:

description
PREDICTED: sodium/potassium/calcium exchanger 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187247 True 635 lncRNA 0.46 1 16719496 16720130

Neighbor

gene id symbol gene type direction distance location
myef2 myef2,LOC107698879,LOC107739991,LOC107568149 coding upstream 1338 16705581 ~ 16718158 (+)
fbn1 fbn1,LOC107713176,LOC107595388,LOC102779271 coding upstream 41430 16618170 ~ 16678066 (+)
secisbp2l secisbp2l,LOC107573840,LOC107740797,LOC107713195,LOC106587693,LOC107698883 coding upstream 109370 16592589 ~ 16610126 (+)
LOC122323202 nnt2,LOC108412674 coding upstream 168779 16536459 ~ 16550717 (+)
slc30a4 slc30a4 coding upstream 196813 16514170 ~ 16522683 (+)
larp6a larp6,LOC107712978,LOC107595350,LOC107739963,LOC107576037,LOC103354325 coding downstream 60552 16780682 ~ 16789673 (+)
ulk3 ulk3,LOC107665498,LOC107681021,LOC107595383 coding downstream 99157 16819287 ~ 16829354 (+)
LOC122363001 NA coding downstream 238694 16958824 ~ 16971364 (+)
LOC122362752 LOC107665215,LOC107595393 coding downstream 346964 17067094 ~ 17069819 (+)
LOC122362967 NA coding downstream 358929 17079059 ~ 17099562 (+)
G126792 NA non-coding upstream 46190 16672536 ~ 16673306 (+)
G126786 NA non-coding upstream 108021 16611181 ~ 16611475 (+)
G126771 NA non-coding upstream 145966 16556719 ~ 16573530 (+)
G126766 fgf7,LOC107663468,LOC107663467,LOC107739939,LOC107574045,LOC107595354 non-coding upstream 159777 16553575 ~ 16559719 (+)
G126779 NA non-coding upstream 194389 16509623 ~ 16525107 (+)
G126815 slc24a5 non-coding downstream 3086 16723216 ~ 16723474 (+)
LOC122362527 NA non-coding downstream 16593 16736723 ~ 16739370 (+)
G126794 NA non-coding downstream 26559 16746689 ~ 16863742 (+)
G126826 NA non-coding downstream 82642 16802772 ~ 16803493 (+)
G126797 NA non-coding downstream 115159 16835289 ~ 16873985 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 448229 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 663869 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 765843 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1671603 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1809339 14906616 ~ 14910157 (+)
G126820 NA other downstream 33579 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 354064 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 409792 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 583639 17303769 ~ 17309158 (+)
G127098 NA other downstream 690555 17410685 ~ 17411593 (+)

Expression


Co-expression Network