CI01000001_01902970_01917410 (MARCH9)


Basic Information

Item Value
gene id CI01000001_01902970_01917410
gene name MARCH9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1902429 ~ 1917454 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01902970_01917410.mRNA
AGACAATTTCGTTTCAGCCATACAACACACACATGTAGTCAAACATGTTCAAGAACCGGATCCGCATGTTTTTTAACGAACTGAAGGTGCTGGTTTTCATGCGATCCGGTTCTAGACGGTCCGACAGTGACGCAGAGCCGAACAGACGGTCCGACAGAATGAGGGGGCTCGGGATGGGCGGCTGCGGATGGCCGCCCTTCGTTGACTGCTCCAGCCGCGATGATGAGGAAGAATACTACGGGAGCGACCCCAGGCCCAGGAGCCTGGCGTTTGAGGAGAAAGACCCGAAACTGCAGGCGGGCCTGGACGCGGTCAGCCTCTCCAGCAGCACGGCCAGCGGCATGAGAACACCCCAGTGTCGAATCTGCTTCCAAGGGCCTGAACAGGGGGAGCTGTTGAGCCCATGCCGCTGCGACGGCTCCGTGCGCTGCACCCACCAGCCCTGCCTGATCCGCTGGATCAGTGAGCGAGGCTCCTGGAGCTGTGAGCTCTGCTACTTCAAGTACCAAGTCCTGGCCATCAGCACCAAGAACCCACTGCAGTGGCAGGCGATTTCTCTGACAGTGATTGAGAAGGTGCAGATCGCCGCCATTATCCTGGGCTCGCTCTTCCTCATTGCCAGTATCTCGTGGCTGGTGTGGTCTTCTCTCAGCCCGTCCGCCAAGTGGCAGCGCCAGGACCTGCTCTTCCAGATCTGCTATGGCATGTACGGCTTCATGGACATCGTGTGCATAGGCCTTATAATCCACGAGGGCTCATCCGTGTATAGAATCTTCAAGCGATGGCAGGCTGTAAACCAGCAGTGGAAAGTATTGAACTATGAGAAGTCGAAGGACTTGGGAGACCCAGTGAGCTCCAGCAGTAAGGCAGGTGGCCGCGGCTCGCGCAGCAACCCGCACGGCCTGGCCAGCGGCAGCAGGGGGGGCCAGCGAGTGCGCAGGTTAAGGACTATCCTCAACCACCACTGCGGCTACACCATCCTCCACATCCTCAGCCAGCTGCGGCCCAGCGACCCGCGGCTCGGGACCGCCACAAACCGCGAGGTGGTCATGCGGGTCACGACCGTATGAGGTCGGACTGGAGAGGGGAAAAAAGTTGCCACCACGTTTCAGGCTCCAATCGCCTTTGCCTGCGAAAGACAGTCTCGCGATGCCAGGATGATTGCGATTTTTCCTTGCATAACGTCTCACTTCGACTTTTTAAACGGACAGGAATGCACACGGGAGCGCGACGAACAATGCATAAGACATTGGGCGCCATTCATTCCTGGAGTTTCTATTGGCGAGACGCTCATGACTCTCTAGCACACTATTGCATTTTTAGTTTGATTTCCTCGCTGGTGTTGTTTTTTTATCGATGCGGTTTTTAAAACTTTTTGATTTTCTAAGGGAAAATGGTACATGAAGTGACACCGACGTGTGATGTATATGGTGACTCATATGGACCTATTGTAAATGATGTTTACGGATGCTTCTGACGCAGCAAGAAAGCCAACCATAACCAAACGATCACGACACAATAACCAGGGAAACAAGATACGAATTGTTACATACTAAAATATATCAAAGGGGAGGGTGCAATAAGACATCATAAGATTATACAGAGAATAAA

Function

symbol description
march9 Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MARCHF9 (membrane associated ring-CH-type finger 9).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10659 MARCH4_9_11; E3 ubiquitin-protein ligase MARCH4/9/11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01902970_01917410.mRNA True 1611 mRNA 0.54 4 1902429 1917454

Neighbor

gene id symbol gene type direction distance location
CI01000001_01873684_01874535 NA coding downstream 27894 1873640 ~ 1874535 (-)
CI01000001_01772744_01773670 NA coding downstream 128759 1772331 ~ 1773670 (-)
CI01000001_01760676_01761671 CPTP coding downstream 140758 1760166 ~ 1761671 (-)
CI01000001_01757774_01758445 NA coding downstream 142986 1757189 ~ 1759443 (-)
CI01000001_01707363_01743870 VWA5B1 coding downstream 158559 1707089 ~ 1743870 (-)
CI01000001_01932927_01933914 TSPAN31 coding upstream 15167 1932621 ~ 1933914 (-)
CI01000001_01976950_01992032 GPR182, PIP4K2CA, PIP4K2C coding upstream 59262 1976716 ~ 1993561 (-)
CI01000001_01999489_02002753 IGFBP6B, IGFBP6 coding upstream 80674 1998128 ~ 2002928 (-)
CI01000001_02057429_02071506 LIMA1A coding upstream 139360 2056814 ~ 2071506 (-)
CI01000001_02126257_02127537 NA coding upstream 207611 2125065 ~ 2127567 (-)
G14257 NA non-coding downstream 6339 1893706 ~ 1896090 (-)
G14112 NA non-coding downstream 30863 1867635 ~ 1871566 (-)
G14104 NA non-coding downstream 130961 1763669 ~ 1771468 (-)
G14100 NA non-coding downstream 147438 1754447 ~ 1754991 (-)
G14096 NA non-coding downstream 149198 1749106 ~ 1753231 (-)
G14259 NA non-coding upstream 3141 1920595 ~ 1920846 (-)
G14261 NA non-coding upstream 4445 1921899 ~ 1922240 (-)
G14267 NA non-coding upstream 57741 1975195 ~ 1975867 (-)
G14217 NA non-coding upstream 86707 2004161 ~ 2005063 (-)
G14213 NA non-coding upstream 87841 2005295 ~ 2007049 (-)
CI01000001_00362143_00378213 NA other downstream 1505296 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1644912 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 1767504 122814 ~ 131380 (-)
G14219 NA other upstream 76756 1994210 ~ 1994898 (-)
G14228 NA other upstream 138520 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 341935 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2474860 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2558830 4468209 ~ 4523431 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021883 march9 coding NC_007134.7 CM002907.2 36771593 ~ 36798620 (+)
bowfin (Amia calva) AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 misc CM030126.1 CM030126.1 12980804 ~ 12992725 (+)