CI01000001_01932927_01933914 (TSPAN31)


Basic Information

Item Value
gene id CI01000001_01932927_01933914
gene name TSPAN31
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1932621 ~ 1933914 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01932927_01933914.mRNA
CTGGTGGGTCTCCTGTTGATTGTCGTAGCAGCATGGGGGAAAGGCTTTGGCATTGTCTCCAGCATCCACATCATCGGTGGCGTGATTGCCGTGGGCTTCTTTCTGCTACTGATCTCCATTGTGGGGCTCATTGGCGCCGTCCATCATCACCAATACATGGTCATTCTCTTCATTGTCTTCCTCTTCCAGTTTGGAATTTCCTGTTCTTGCCTGGCCATGAACCAGGGTCAGCAGGAGAAGCTGCTGAACTCGTCCTGGAAAATAATGAGTAACGACACGAGAATCAGCCTTGAGAACAAAATGGACTGCTGTGGCCTGTTCAACAATACTCAGACAGATTTTGTATCTGACTTACACCTCTGTGAAGCTCCATGTGTAAAAAAGAAATCCTGCCTCACCTGTGGTGAAAAGATGCTCCAACATTCATCAGAAGCTCTGAAGATTCTGGGAGGAGTCGGCCTCTTTTTCAGCTTTACAGAGGTTAGTTCAGATCACATGTGAATGCCTCAAAAACATTGTGGGAACTGGAGATCTGGACTTCTTTTGTTGCCTGTCCTTCTGAGGTCTGGGCATGTTAGTTAGAGAATCATGGTTAAAATAATTGTTATTGATCATAAATAAGTTGTAATTAAGAATGTGGCATCCTACAAAAACTAAATTTACAAACTACATCATTGTTAGAAGGTAAAATACATTAAAAAGTATCAATTACACATCTAAAGCTCATCCTTTACTCTTCATTTTGTTGCATAAGCTCAATAAGAAAAGTTGTTGTGGTTGTTAGTAAGTGAAAAAGAGATAAATAAA

Function

symbol description
tspan31 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN31 (tetraspanin 31).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01932927_01933914.mRNA True 807 mRNA 0.41 4 1932621 1933914

Neighbor

gene id symbol gene type direction distance location
CI01000001_01902970_01917410 MARCH9 coding downstream 15167 1902429 ~ 1917454 (-)
CI01000001_01873684_01874535 NA coding downstream 58086 1873640 ~ 1874535 (-)
CI01000001_01772744_01773670 NA coding downstream 158951 1772331 ~ 1773670 (-)
CI01000001_01760676_01761671 CPTP coding downstream 170950 1760166 ~ 1761671 (-)
CI01000001_01757774_01758445 NA coding downstream 173178 1757189 ~ 1759443 (-)
CI01000001_01976950_01992032 GPR182, PIP4K2CA, PIP4K2C coding upstream 42802 1976716 ~ 1993561 (-)
CI01000001_01999489_02002753 IGFBP6B, IGFBP6 coding upstream 64214 1998128 ~ 2002928 (-)
CI01000001_02057429_02071506 LIMA1A coding upstream 122900 2056814 ~ 2071506 (-)
CI01000001_02126257_02127537 NA coding upstream 191151 2125065 ~ 2127567 (-)
CI01000001_02141590_02142836 COPZ1, COPZ1.L, COPZ1-B coding upstream 207646 2141560 ~ 2142986 (-)
G14261 NA non-coding downstream 10381 1921899 ~ 1922240 (-)
G14259 NA non-coding downstream 11775 1920595 ~ 1920846 (-)
G14257 NA non-coding downstream 36531 1893706 ~ 1896090 (-)
G14112 NA non-coding downstream 61055 1867635 ~ 1871566 (-)
G14104 NA non-coding downstream 161153 1763669 ~ 1771468 (-)
G14267 NA non-coding upstream 41281 1975195 ~ 1975867 (-)
G14217 NA non-coding upstream 70247 2004161 ~ 2005063 (-)
G14213 NA non-coding upstream 71381 2005295 ~ 2007049 (-)
G14216 NA non-coding upstream 168242 2102156 ~ 2102501 (-)
G14198 NA non-coding upstream 168675 2102589 ~ 2103469 (-)
CI01000001_00362143_00378213 NA other downstream 1535488 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1675104 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 1797696 122814 ~ 131380 (-)
G14219 NA other upstream 60296 1994210 ~ 1994898 (-)
G14228 NA other upstream 122060 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 325475 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2458400 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2542370 4468209 ~ 4523431 (-)

Expression


Co-expression Network