LOC122322999


Basic Information

Item Value
gene id LOC122322999
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17515659 ~ 17520724 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU187720
GAGGAACTGCGCGCCTTTCCCTTCGTTTAGGAGAACTGGTGCGGCCTGAGCTCTGGCAGACGATCCTCGAACATCCGCGTCTCGAACGGCACGCTGGGAGTTTTCATGCGTTGTTTGCTGCCGGAGCCCTGCGGCGCCGGAGACGTCATTGTTTCCCGACTCCTTCATACGTTCAGATAAAAGTCAACACGCCGGTTATTCCCTCATCCATGAAGCTGAGCTCGGGGTCAGCGGTCTTCGTGTGAAAACGCTCATACCTGTGCGTCTCTCAGCTGTCTGGAGATCTGGGAAGGATGTTTGCTTTGTGAATCTGTCTAAACGCCAACAGGAGCTCTCAAATGAGTCCAGAGAACGTATCACACCTGATCTACCCAGAGAGAACGAAGACAGTGCAATGAATTAGTTTCATCGTGTCTGGAGCATTATT
>XR_006246930.1
TATGTAGTGGTGCTGAAGCGTGTGGCTTGGACGTGCGTTAACCGCTTCTGTCCCGGAGGAGAGCAGATTAACGTTATCATCCATCGGGCAGCTGCGCTCCTCGCTCGCTCAGATCTCCCGCTGTACGCTGAGTTCTGACGCTGACTGGAGGAACTGCGCGCCTTTCCCTTCGTTTAGGAGAACTGGTGCGGCCTGAGCTCTGGCAGACGATCCTCGAACATCCGCGTCTCGAACGGCACGCTGGGAGTTTTCATGCGTTGTTTGCTGCCGGAGCCCTGCGGCGCCGGAGACGTCATTGTTTCCCGACTCCTTCATACGTTCAGATAAAAGTCAACACGCCGGTTATTCCCTCATCCATGAAGCTGAGCTCGGGGTCAGCGGTCTTCGTGTGAAAACGCTCATACCTGTGCGTCTCTCAGCTGTCTGGAGATCTGGGAAGGATGTTTGCTTTGTGAATCTGTCTAAACGCCAACAGGAGCTCTCAAATGAGTCCAGAGAACGTATCACACCTGATCTACCCAGAGAGAACGAAGACAGTGCAATGAATTAGTTTCATCGTGTCTGGAGCATTATTTGACGACTGTCTGTTGAGCGACGCTCTCATCAGAAACTCAGATTCAGCGGTGAAGACCGTCATTAATCAGCGTAAAGGCTTTAATCAACATCAATACATCGAGCGCTCGTACTGAATTCAATTAGAAAAGGGCTTTTTCTTTATTAGACGCACGTCTGCGCTACTCCTCCGTTAATCCCGAGACCCTGCCGAGAGTTGCCACAAATCccattattattcttattttatgaataaaaacatttgatttgttCTGTAAGGAGGGTGTTTATGAGAACGGTACGATGCCAGCTTTCTATAAGCCCAGTATGAGAAACAATGCATATCTTACACAAGCTGCACGCTCCCTTTCTATACCttcactttgcatttttatgacaGTCTCGGGTGAAGGAGCGTCTATGCTCTTCCTCCATTGCGCCGGAGAGgagagaataataataatgcgaAGGCAAACTAAAGGGATGAAGAAAATGGTGGATGGTGCAAAGCCATGCATCTCAGGTGAAGATCTGGCACTCGCTCCTTTCCAGAACGATTCCTTCCATCAGCATTTGGGCCCTGTCCGTTTCCATCAATGAACCCGTCTGAGAGCGATCGGTGACGGATATGTTTGCCTGCGCTGCGATCGTCCGGCTCACGGCGTGACAGGACAACCTGACAAACATCCAGATCGAGAACGTGTAGCGTTTGAACCAATCACACGCGTGCGATTTTTCATTAGACCGACTAACAATCCCAGATACGCGGCCATAATTCTCTCTAAAAGTTGCAAAAAGTCCTTGTCAATTTGTCCTGTGATGCATATCTGCATATATGATGCCGTTCATGTATATAGTCTTTTGTGTTATATACTGTTTTATGGTCCTTCATGTGTATCTACACCACTAGTACGCAGCTTACATAcatgtaatacctttctaattacgTTAAAATGACTGAATATTACACGGGCGCGAGCTACGTTAAATAAAGTCTATCAAAATGGTATGATCAAGTGTAAAAAGCTGTGTAACAGTTACTTATAAGTACATGTTATTTCACAtgcaatggctactactaagtattAGGTAATTACTatgttattactatattatgacagcttaaaatatttatttatttattaagacgTTTTGTTTagagtttgttttgttaatacaagaaaaaataaaaagctgtcACTATAGCGTTTAGCTTTTATACCTTTTAGGTGCTGATATGTACACTTATGTGTAGCTTTAAAGCACTAATACAGAGCCTTTTGAAAAAGCAGTGCcctagtgacagcttttgtcCCTTGAATGCATGTTCTATTCACATTTTTGAACTCGGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187720 False 427 lncRNA 0.52 3 17515806 17519391
XR_006246930.1 True 1907 lncRNA 0.44 3 17515659 17520724

Neighbor

gene id symbol gene type direction distance location
LOC122362636 LOC107554234,LOC107665407,LOC107713070 coding upstream 15142 17498529 ~ 17500517 (+)
lrch3 lrch3,LOC107735844 coding upstream 33479 17457090 ~ 17482180 (+)
LOC122322924 NA coding upstream 75594 17437151 ~ 17440065 (+)
ompa omp,ompa,LOC107735103,LOC107660685 coding upstream 89682 17425154 ~ 17425977 (+)
unc13c unc13c,LOC107554226,LOC107665324,LOC108411445 coding upstream 160811 17325966 ~ 17354848 (+)
LOC122363047 unc13c coding downstream 34486 17555210 ~ 17693234 (+)
pigb pigb,LOC107600388,LOC107708293 coding downstream 248934 17769658 ~ 17776977 (+)
LOC122323000 wtip,LOC107594378,LOC107600421,LOC107734993,LOC107712576,LOC107659186,LOC107662496 coding downstream 367243 17887967 ~ 17917268 (+)
LOC122362789 kiaa0355,LOC107594396,LOC107734949,LOC107668468,LOC107600920,LOC107712582 coding downstream 416306 17937030 ~ 17969461 (+)
LOC122362666 LOC107712581,LOC107668485,LOC107734866,LOC107659171 coding downstream 462754 17983478 ~ 18070581 (+)
G127110 NA non-coding upstream 65858 17449471 ~ 17449801 (+)
G127103 NA non-coding upstream 69595 17444961 ~ 17446064 (+)
G126906 NA non-coding upstream 237074 17278206 ~ 17278585 (+)
G126903 NA non-coding upstream 258296 17256811 ~ 17257363 (+)
G126893 NA non-coding upstream 343354 17172005 ~ 17172305 (+)
LOC122323095 NA non-coding downstream 900 17521624 ~ 17527930 (+)
G127195 NA non-coding downstream 174610 17695334 ~ 17695593 (+)
G127207 NA non-coding downstream 228667 17749391 ~ 17750176 (+)
G127208 NA non-coding downstream 229628 17750352 ~ 17751251 (+)
G127228 NA non-coding downstream 261874 17782598 ~ 17783703 (+)
serp1 NA other upstream 60002 17454154 ~ 17455657 (+)
G127098 NA other upstream 104066 17410685 ~ 17411593 (+)
LOC122322904 NA other upstream 206501 17303769 ~ 17309158 (+)
LOC122362575 NA other upstream 344324 17129922 ~ 17171335 (+)
G126884 ctxn2 other upstream 438500 17074194 ~ 17077159 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other downstream 287877 17808601 ~ 17814422 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other downstream 362894 17883618 ~ 17887211 (+)
G127258 NA other downstream 402204 17922928 ~ 17928165 (+)
G127292 NA other downstream 617811 18138535 ~ 18140253 (+)
G127456 rps3 other downstream 1039239 18559963 ~ 18563152 (+)

Expression


Co-expression Network