G127243 (nedd4,LOC107735005,LOC107712575,LOC107659054)


Basic Information

Item Value
gene id G127243
gene name nedd4,LOC107735005,LOC107712575,LOC107659054
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17857012 ~ 17858149 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU187898
CTGAATACTCAAACAGCCCATAATACGGGTTGAACATTTCCTTGGAGATCAGGAAGAACCATTCTCTGGCCACGCCTCCATAGTCCAGCCCCTTCTCTCCCTCAAACTCCACCCAGAGGCGGGCCTTCAGCAGGTCCGAGCGTTTGACGGACAGAATGCGGCGGTAGGAGTCTTCCAGAACAGCATTACGTCTCACATTCAGCTCAAAGCGGTTCGGGATGTCAGCCTGGAGACCTGGTTTCTTGAGTTTCTTGCGGAAGTACTCATACTTCTGTTTATAGTCTCTGGAGTAAGGCACGGcctgaaataaagcagaacCCAATCATTTCACCAATAATCCATGAGCTCTT

Function

symbol description
nedd4 Enables several functions, including beta-2 adrenergic receptor binding activity; sodium channel inhibitor activity; and ubiquitin protein ligase activity. Involved in several processes, including intracellular steroid hormone receptor signaling pathway; receptor metabolic process; and regulation of ion transmembrane transporter activity. Acts upstream of or within positive regulation of protein catabolic process and protein ubiquitination. Located in several cellular components, including Golgi apparatus; chromatin; and perinuclear region of cytoplasm. Part of protein-containing complex.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase NEDD4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187898 True 350 lncRNA 0.50 2 17857012 17858149

Neighbor

gene id symbol gene type direction distance location
pigb pigb,LOC107600388,LOC107708293 coding upstream 80035 17769658 ~ 17776977 (+)
LOC122363047 unc13c coding upstream 163778 17555210 ~ 17693234 (+)
LOC122362636 LOC107554234,LOC107665407,LOC107713070 coding upstream 356495 17498529 ~ 17500517 (+)
lrch3 lrch3,LOC107735844 coding upstream 374832 17457090 ~ 17482180 (+)
LOC122322924 NA coding upstream 416947 17437151 ~ 17440065 (+)
LOC122323000 wtip,LOC107594378,LOC107600421,LOC107734993,LOC107712576,LOC107659186,LOC107662496 coding downstream 29818 17887967 ~ 17917268 (+)
LOC122362789 kiaa0355,LOC107594396,LOC107734949,LOC107668468,LOC107600920,LOC107712582 coding downstream 78881 17937030 ~ 17969461 (+)
LOC122362666 LOC107712581,LOC107668485,LOC107734866,LOC107659171 coding downstream 125329 17983478 ~ 18070581 (+)
pepd pepd coding downstream 419215 18277364 ~ 18334482 (+)
ugt5f1 LOC107709391 coding downstream 480994 18339143 ~ 18343857 (+)
G127242 NA non-coding upstream 1201 17854650 ~ 17855811 (+)
G127240 NA non-coding upstream 5299 17818738 ~ 17851713 (+)
G127228 NA non-coding upstream 73309 17782598 ~ 17783703 (+)
G127208 NA non-coding upstream 105761 17750352 ~ 17751251 (+)
G127207 NA non-coding upstream 106836 17749391 ~ 17750176 (+)
G127263 NA non-coding downstream 114401 17972550 ~ 17974502 (+)
G127268 NA non-coding downstream 119526 17977675 ~ 17981341 (+)
G127413 NA non-coding downstream 493591 18351740 ~ 18352103 (+)
G127431 NA non-coding downstream 627708 18485857 ~ 18487271 (+)
G127434 NA non-coding downstream 633848 18491997 ~ 18518461 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other upstream 42590 17808601 ~ 17814422 (+)
serp1 NA other upstream 401355 17454154 ~ 17455657 (+)
G127098 NA other upstream 445419 17410685 ~ 17411593 (+)
LOC122322904 NA other upstream 547854 17303769 ~ 17309158 (+)
LOC122362575 NA other upstream 685677 17129922 ~ 17171335 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other downstream 25469 17883618 ~ 17887211 (+)
G127258 NA other downstream 64779 17922928 ~ 17928165 (+)
G127292 NA other downstream 280386 18138535 ~ 18140253 (+)
G127456 rps3 other downstream 701814 18559963 ~ 18563152 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other downstream 788213 18646362 ~ 18652164 (+)

Expression


Co-expression Network