CI01000001_01976950_01992032 (GPR182, PIP4K2CA, PIP4K2C)


Basic Information

Item Value
gene id CI01000001_01976950_01992032
gene name GPR182, PIP4K2CA, PIP4K2C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1976716 ~ 1993561 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01976950_01992032.mRNA
AGTATCGTTTATGGAAGTGTGTTTGTTTTCCTTTATATTAAAGTGTTTCTTTGCATTCTGTTTTGCGATTATGTTACAGTTTTGTTTTTTTTTGTTTTTTGAATTTTTTTGTCTGAGGTCTTGTTAAACAGTGTTAATATTATAGCAAATGCAATAATACATTTTCAGACATGTGATTCATTGCCCTGCAACATTTTGTAATAAATACTTTTGGAATTACCATTTTAGGAATATTAACTGGAGATTGATTTGGACTTGTAATAACAAATACTGTATCAATAATAAATTTAATGAAATATACTTTAAAATTATAGGCCTACATATAATTTATCTAACAAACCAGTTCCTAAAAAGATATAAAAATTATCTTTCTGAATCTTGTGTATTTTGTAAAATGGATATTGATTTTACTTTTTTTTTTCTTTTTTTTTTTTTTGAATGTATGTTAAAAACGCTTTTGGATTGATGTGGAATATTTATTATATATGTTAAGTAGAATTAAAATTAACAGAGAGAAAAAAGTTTTTTTATTATAACAAAAAAAAAAAAAAAAAATAGACAAGATTCACATTTTTATGTTAAATCTTATAATATTACTTGGTAAGTTTTACATACACAAATGTAAATGGCCTGCCCAATTTATAAATATTTACTTTGAAACCTTACAAGGACTCTCAAGCCATAAAACAATCACAAATATGGACATTTACATAGAATTAAATTCCTCTTTTTTATTTTGATTATACACATACCCTTTTCTGTTATCTTTTTTCTTTCTCTTTTCTTTCTTCCTACTCTTTAATATGTGAATATATGTCTTTGTTATCCTTAACGTTCATCATATACAAAACCTGATGCTAAAAATTTTATTGTTTTTACAGCATTATATGTGAAACATTTGTATTTTTCGAAATGTTACATGTATGTTTTGTTGGAAATAAACGTTTAAAAAAATATCTTTCACTGATTGATTCTCGGCTCTTTACAAATTGCTCATGTTCGAAAGAGTTCGTTGAATGAGTTGCTGACTCGAGAACCGCTCGGACCGATTCAGTCCAATTCCTGAACCGGTTCAACCGAATCTTTGAAAAGATCCACTCCAAAATGAACGATTTGTTACAACATGTCATTCATGTCACTAGAGTTAGAAGGCGAAGTTTAATAATTATGGTTAGGTTAATACTGATATATTTTTAACTGTCTCATCTCACCTGTAAAACCACATGACGTACACTCAGGTGAGATCCTGCCTGACACACATTCTTGCTGTCACAATATATCAAGAGATCTGTTCCTCTGAACTTGTGGGAGGAGCATCAGGATCACTGCCACACTTCAGCAACCTAGTGTTGTTCACTTCCATGAAGAATCGGTCCATCTGGGCCTGCAAACACAGCGGAAAACCGGCCCCGCGGCTTAGCGCTTGTGTTATTCGACCGCTGATTGTCAGTTAGAGGATCCGGAGCAGGAACAGAGGGAGGCGGATCCGAGAGGAAAACAGACCGCTGCGTTACAGGGGAGTGACCGTGATGATGGCGTCTCTCGGTAACACCGGCAGCGCCTCCAGCCCGATGGTCATGCTTGCCCCCAAAACCAAGACCAAAAAGAAACATTTCGTGCAGCAGAAGGTGAAAGTGTTCCGAGCGAGCGACCCGATGCTTAGCGTGTTCATGTGGGGAGTTAATCATTCGATAAATGATTTAAATCAAGTTCCAGTGCCCGTCATGCTGCTCCCTGACGACTTCAAAGCCAACACCAAAATTAAAGTGAACAACCATCTCTTCAACAAGGAGAATCTTCCAGGCCATTTTAAATTTAAGGAGTACTGTCCGCAAGTTTTCAGGAACCTCAGGGAGCGATTTGGAATTGAAGATCTTGACTACCAGGTGTCCCTGGCCCGCAGTGCGCCCATGAGAGGAGATGGACAGGGAGAAGGTCTTCTCTTCACGTCATATGACCGTACGCTGATAGTGAAGCACATCTCCAGTGAAGAAGTAGCCGACATGCATAACATTCTGTCCGAGTATCACCAGCATATAGTGAAGTGTCATGGCAGTACACTTCTCCCTCAGTTTTTGGGCATGTACCGTGTTACGGTGGAGAGTGAGGACACGTACCTGATCGTCATGAGGAACATGTTCAGCCACAGACTCGTTGTCCACAGGAAATACGACCTGAAGGGTTCCCTGGTGGATCGTGAAGCCAGTGACAAAGAGAAGGTGAAAGAACTGCCCACTTTTAAAGATGTGGATTTCAGAAATAACATGCAGAAGGTGTATGTGACGGAGGAACAGAAAGAGAAGATTATGGAGAAGCTAAATCGAGATGTAGAGTTCCTGGTGAAGCTGAAGATAATGGATTACAGCCTGTTGCTGGGCATCCATGACGTGGCACGTGGCGAGCGGGAGGAAGAGGAAGCTGAGGAGCCCTGCTGTGAAGATGACACTGATCCTGAGAACGGCCTTGCTCCGGCCGCACAGGTTGGCTCTTACGGCACGTCTCCGGAGGGCATCGCCGGTTACATGAACAACTTCAAACCCCTGGGCCCTGGAGAATTTGACCCTTACGTTGATGTATATGCTGTCAAAAGCGCTCCAGGAGCACCGCAGAGGGAGGTGTATTTCATGGGCCTCATTGACGTGTTGACGCAGTACGACACTAAGAAAAAAGCTGCCCATGCAGCAAAGACCGTTAAACATGGCAACATGACGTACGATCTACACAACTCGTCGTACGACTTCTACAACGGCACGCCGTGGTTTGTCTACGACTGCACCATCCACCTAGACGAGGACGGCCGACGGATCGCTCTTTTCCTCCTTTACCTGGTGCTGTTCATGGTAGGGTTGGGCGAGAACACAGTGGTGGTGTGGGTGAACTGGCGAAGGCGGCATTCGGCGAATGGCGTGCTGTTCTGCGTCATCAACGTGAGCTTGTCCGACTTGATGGTGATCTTCACCATGCCCTTCTTCATGCTGGAGGTGACCATGGACAAGGTTTGGCTGTGGGGCCGCTTCCTTTGCAAGGTCACACACCTCGTGTATGTCATCAACTTCTACAGCAGCTCCCTCTTCCTGGCCTTCATGACTCTGGAGCGATACTTGTCCTTGACGCGTCCCAACGCACCCGCTTGCTTCCCTCCACAGCACAAACGCCGCTGGTTGCTCTGCGCCGGGATCTGGCTCTTGTCGCTTGTGCTGGCCTTGCTGGAGAATGTCCACGTTGACCTGTTGGAGTGGGATGAACCGGGTTGCTATATGGTACCCGAGCAGTACTACACGGAGTGGTTTGTCTCAGTTTCCTTCCTTTGCCTGATATTCCAATTCCTAGGGCCGGCATCCGTCATCATCACCTGCAACATCTTGATTGCCCGAGCCGTCCGCTCAGCTCCGGACGTCCAGAATCGCCGGGACGTGTGGTTGGTGCACCTGTACTCGCTGGTCTTTGTGGCCTGCTGGCTACCCTACCATTTAGTGTTGTTCTTGTTGACAGTGGACGACTTGGATCCGCACCTGTTCTCCTGCAACACGGTCGGGGTGCTGTACTTCTCATTTAGCCTCGTGCAATGCTTGTCGCTCTTTCACTGCATCGCCAACCCAATCCTCTACAACTTTCTCAGTAAGAGCTTCCGCAACAATCTAATAAACGCAGTGATCAGCCGCATCTCTTCACCACCGGCCAGCACGCCAGCTAACGCGATAGCCGACAACACAGGGACGACAGCGGTGAAGGAGCGGAAGCTCAGTAACGCAAGCACGAGTCACTCCGACATTGGCGCGTGAAGAGGGAAACTCCTAAATGACGATCTGGTGAAGCAAAATATGTGCTACGAATGAAATGGCCTTGTTGAGGCAGTTGTTTTTGGTCATTTGCCCAGTAACTAGCCATAATTTCTCCTGTTTTTCTCACCTCAGTATTGTTAACAGTGCAAGGAAGGAAATATTGTCGTCCTTTCGTAACCTTTATTTCCACCGGTTGCTATTGTCACATCTAGGAACTCCTAGATAAGTAATAAA

Function

symbol description
gpr182 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blood; cardiovascular system; endothelial cell; lateral mesoderm; and retina. Orthologous to human GPR182 (G protein-coupled receptor 182).
pip4k2ca Predicted to enable 1-phosphatidylinositol-4-phosphate 5-kinase activity. Predicted to be involved in 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Predicted to be located in endoplasmic reticulum. Is expressed in gut; pectoral fin musculature; polster; and pronephric duct. Orthologous to human PIP4K2C (phosphatidylinositol-5-phosphate 4-kinase type 2 gamma).
pip4k2c Enables 1-phosphatidylinositol-4-phosphate 5-kinase activity and identical protein binding activity. Involved in several processes, including 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process; negative regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity; and positive regulation of autophagosome assembly. Located in several cellular components, including autophagosome; cytosol; and nucleoplasm.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K00920 PIP4K2; 1-phosphatidylinositol-5-phosphate 4-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01976950_01992032.mRNA True 4016 mRNA 0.44 10 1976716 1993561

Neighbor

gene id symbol gene type direction distance location
CI01000001_01932927_01933914 TSPAN31 coding downstream 42802 1932621 ~ 1933914 (-)
CI01000001_01902970_01917410 MARCH9 coding downstream 59262 1902429 ~ 1917454 (-)
CI01000001_01873684_01874535 NA coding downstream 102181 1873640 ~ 1874535 (-)
CI01000001_01772744_01773670 NA coding downstream 203046 1772331 ~ 1773670 (-)
CI01000001_01760676_01761671 CPTP coding downstream 215045 1760166 ~ 1761671 (-)
CI01000001_01999489_02002753 IGFBP6B, IGFBP6 coding upstream 4567 1998128 ~ 2002928 (-)
CI01000001_02057429_02071506 LIMA1A coding upstream 63253 2056814 ~ 2071506 (-)
CI01000001_02126257_02127537 NA coding upstream 131504 2125065 ~ 2127567 (-)
CI01000001_02141590_02142836 COPZ1, COPZ1.L, COPZ1-B coding upstream 147999 2141560 ~ 2142986 (-)
CI01000001_02159372_02162554 HNRNPA1, ROA1 coding upstream 165598 2159159 ~ 2162554 (-)
G14267 NA non-coding downstream 849 1975195 ~ 1975867 (-)
G14261 NA non-coding downstream 54476 1921899 ~ 1922240 (-)
G14259 NA non-coding downstream 55870 1920595 ~ 1920846 (-)
G14257 NA non-coding downstream 80626 1893706 ~ 1896090 (-)
G14112 NA non-coding downstream 105150 1867635 ~ 1871566 (-)
G14217 NA non-coding upstream 10600 2004161 ~ 2005063 (-)
G14213 NA non-coding upstream 11734 2005295 ~ 2007049 (-)
G14216 NA non-coding upstream 108595 2102156 ~ 2102501 (-)
G14198 NA non-coding upstream 109028 2102589 ~ 2103469 (-)
G14293 NA non-coding upstream 124794 2118355 ~ 2118566 (-)
G14104 NA other downstream 209258 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1579583 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1719199 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 1841791 122814 ~ 131380 (-)
G14219 NA other upstream 649 1994210 ~ 1994898 (-)
G14228 NA other upstream 62413 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 265828 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2398753 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2482723 4468209 ~ 4523431 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021880 pip4k2ca coding NC_007134.7 CM002907.2 36616717 ~ 36645135 (+)
bowfin (Amia calva) AMCG00008830 pip4k2c,LOC103385206 coding CM030126.1 CM030126.1 12899895 ~ 12907881 (+)