G127443 (clns1a,LOC107594388,LOC107579082)


Basic Information

Item Value
gene id G127443
gene name clns1a,LOC107594388,LOC107579082
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18527129 ~ 18528342 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU188185
CAAATTCGGCCGAAGGCACGTCGGTTCTGACTCCGGCCATGTGGTACTGCTGTGCGACGGACTGGGCCAGCATCCCCTCCAGACGGTCCAGTGTGGCCTGACCCTCGGCCGTCAGGTGAGACAAACCCTCCTCGTAGGTGTAGAACGTGGGGATGTCGCCCTGAACCTGACCCTGCTCTTGTTCCGCCTCCTCCACGTCATACTCCTCTCCCTCGTAATCGTCATCGTCGGTGTCGGCGTCGTCGGGGTCGGGGTGCAGGGCCTGACAGTCACACATGGCGGAGAACATGGGCTctactgcacacacaaacacacaccgtcACTCAGACGGGAGCGGCGCCATGCTcgtctcttacacacacacacacacacagagcagagcgctctacacacacacacacaccattcacagcagagcactctatacac
>TU188186
CAAATTCGGCCGAAGGCACGTCGGTTCTGACTCCGGCCATGTGGTACTGCTGTGCGACGGACTGGGCCAGCATCCCCTCCAGACGGTCCAGTGTGGCCTGACCCTCGGCCGTCAGGTGAGACAAACCCTCCTCGTAGGTGTAGAACGTGGGGATGTCGCCCTGAACCTGACCCTGCTCTTGTTCCGCCTCCTCCACGTCATACTCCTCTCCCTCGTAATCGTCATCGTCGGTGTCGGCGTCGTCGGGGTCGGGGTGCAGGGCCTGACAGTCACACATGGCGGAGAACATGGGCTctactgcacacacaaacacacaccgttcaCAGCAGAGCACtctatacacagacacacactcagacacacac

Function

symbol description
clns1a Acts upstream of or within axon extension. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be part of spliceosomal complex. Predicted to be active in cytosol. Orthologous to human CLNS1A (chloride nucleotide-sensitive channel 1A).

NR:

description
PREDICTED: methylosome subunit pICln

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188185 True 429 lncRNA 0.60 3 18527129 18528132
TU188186 False 365 lncRNA 0.60 3 18527129 18528342

Neighbor

gene id symbol gene type direction distance location
aqp11 LOC107659225,LOC107715828,LOC107594401 coding upstream 3565 18519991 ~ 18523564 (+)
hcn4 hcn4,LOC107658947,LOC107715829,LOC107553361,LOC107668476,LOC107594389 coding upstream 66320 18393603 ~ 18460809 (+)
LOC122362573 LOC107668478,LOC107715830,LOC107658962,LOC107594373,LOC107553363 coding upstream 140199 18339199 ~ 18386930 (+)
ugt5f1 LOC107709391 coding upstream 183272 18339143 ~ 18343857 (+)
pepd pepd coding upstream 192647 18277364 ~ 18334482 (+)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309,LOC107600345 coding downstream 16021 18544363 ~ 18546307 (+)
LOC122323077 LOC107600293,LOC107660691,LOC107735981,LOC107658864,LOC107594385 coding downstream 126276 18654618 ~ 18658740 (+)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107735288,LOC107600237 coding downstream 851693 19380035 ~ 19388663 (+)
LOC122323148 LOC107735994,LOC107660689,LOC107755676,LOC107687769,LOC107600770,LOC107572113,LOC107570700 coding downstream 875979 19404321 ~ 19451211 (+)
LOC122362761 LOC107686603,LOC107662910,LOC107600197,LOC107735331 coding downstream 1071670 19600012 ~ 19603818 (+)
G127434 NA non-coding upstream 8668 18491997 ~ 18518461 (+)
G127431 NA non-coding upstream 39858 18485857 ~ 18487271 (+)
G127413 NA non-coding upstream 175026 18351740 ~ 18352103 (+)
G127268 NA non-coding upstream 545788 17977675 ~ 17981341 (+)
G127263 NA non-coding upstream 552627 17972550 ~ 17974502 (+)
G127460 NA non-coding downstream 45477 18573819 ~ 18574354 (+)
G127492 NA non-coding downstream 162223 18690565 ~ 18693231 (+)
LOC122362700 NA non-coding downstream 801980 19330322 ~ 19348479 (+)
LOC122323165 NA non-coding downstream 924188 19452530 ~ 19480221 (+)
LOC122323166 NA non-coding downstream 959228 19487570 ~ 19568485 (+)
G127292 NA other upstream 386876 18138535 ~ 18140253 (+)
G127258 NA other upstream 598964 17922928 ~ 17928165 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other upstream 639918 17883618 ~ 17887211 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other upstream 712707 17808601 ~ 17814422 (+)
serp1 NA other upstream 1071472 17454154 ~ 17455657 (+)
G127456 rps3 other downstream 31621 18559963 ~ 18563152 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other downstream 118020 18646362 ~ 18652164 (+)
G127500 NA other downstream 202348 18730690 ~ 18841535 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other downstream 741269 19269611 ~ 19288556 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other downstream 1474662 20003004 ~ 20015706 (+)

Expression


Co-expression Network