G127456 (rps3)


Basic Information

Item Value
gene id G127456
gene name rps3
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18559963 ~ 18563152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU188207
TCAGTTTGTGGTTTCTGGCTCTCACCCCTTTATGCGGTTGGGACTGGGGTTCCCTGTGGCATGACTGGGACCTCGGGCTTGGCCCCCTTCTGTTCAGACACCGGGGTGGTGGGCAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTGTCGGAGCAGTACGTGGCGGACGGCCGTGTCGACGTAGTAGTTCACGGGGTCTCCGCTGTGGATCATCAGGCCATCCACGAACTTCATGGACTTGGCTCTCTGACCTCTCAGTTTACCAGagacgaccacctcacaacccTTGGCCCCGCTCTCCATGATGAAGCGCAGAACACCATAGCAGGCCCTGAGGACAATAGACACGACGCACAACCGTAAACGCGCTG
>TU188208
TCAGTTTGTGGTTTCTGGCTCTCACCCCTTTATGCGGTTGGGACTGGGGTTCCCTGTGGCATGACTGGGACCTCGGGCTTGGCCCCCTTCTGTTCAGACACCGGGGTGGTGGGCAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACCCCTGTCGGAGCAGTACGTGGCGGACGGCCGTGTCGACGTAGTAGTTCACGGGGTCTCCGCTGTGGATCATCAGGCCATCCACGAACTTCATGGACTTGGCTCTCTGACCTCTCAGTTTACCAGagacgaccacctcacaacccTTGGCCCCGCTCTCCATGATGAAGCGCAGAACACCATAGCAGGCCCTGAGGACAATAGACACGACGCACAACCGTAAACGCGCTG
>TU188209
TTGACTTGCATGCTGATACTTAACCGCGCTGGCCACAGTAACCTCCATAAATTCTAGCATTCGTCTTTAAAACATTGCTCATTTGAAATGAACGAAAACAGACAACGTTTCCccatttatcaatttatttttatacagaaaAGTATAGGCCTTCCATCAATGATCGGTCAACCCTTTATGCGGTTGGGACTGGGGTTCCCTGTGGCATGACTGGGACCTCGGGCTTGGCCCCCTTCTGTTCAGACACCGGGGTGGTGGGCAGGACCTCCTCTTTGGGCTCCACGATGCTGACGTGGTCAGGCAGGGGCTTCTTGGGGCCGATCTTGCCGCTGGGATCCCAGGGAAGCATGATTTTCACCTTGATTCCAAGCACACCTTGTAGCGCAGAGACTCCGCCTGAGCGATGGCACAGAGACCCCGGGTGGCGACCTTCTCAGCATACAGCTACAAAGAAAGCACAATACTTCAGTTACAGCTAATTTCGGACCGCATTTACAGCCGTGTTTGGCGCTGACCTCACCTCCACGCTGCCTTCAGGGAACCCGAATCGTTTCTGAACGACGGCGGTCAGTTCACGGATGCGGCGGCCTTTCTCTCCCAGAACGTTCTGGGTCCTGGAGACAAACAGAGGAAGCCATTACACCTTGCGCTTGAGATAACGCTTTCAAAAgctcatttcaatttaaatttttatcaACTCAAAGGGGAGTTAACGGGTCACACCTGGTGGCTAGGATGATGATTTCTGTTCTTGTTGGCGTGACACGGACCTCCACACCGGAGTACCCATCCTCGGCCAGCTCTCGGGTCAGAAACTCATTCAGCTCGGCTTTGAAGATGCCATCTGACACAACTTTCTCTTCTTCGAGATTTGCACCGCCATCTTGCCGGAGGCCGCAGACAGGAAAGGAATTGGCAGCGTAGCGGAAATGCGTTTATGGTAACGAATTACTTCCGTGTGATGGTGCACGATGATGGGAATTGTAGTTCTCGCATCACACGCGGTTTCTTTTTAATTAGCGGTTAATACAGCGTACGATATTGTAATtataacatcaaataaaaattttaatagcGTATGGTTTAATGTttc

Function

symbol description
rps3 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and erythrocyte differentiation. Predicted to be located in mitochondrial inner membrane; ribosome; and spindle. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleus. Orthologous to human RPS3 (ribosomal protein S3).

NR:

description
PREDICTED: 40S ribosomal protein S3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188207 False 456 TUCP 0.59 2 18560366 18561610
TU188208 False 456 TUCP 0.59 2 18560366 18561610
TU188209 True 1093 lncRNA 0.49 4 18559963 18563152

Neighbor

gene id symbol gene type direction distance location
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309,LOC107600345 coding upstream 13656 18544363 ~ 18546307 (+)
aqp11 LOC107659225,LOC107715828,LOC107594401 coding upstream 36399 18519991 ~ 18523564 (+)
hcn4 hcn4,LOC107658947,LOC107715829,LOC107553361,LOC107668476,LOC107594389 coding upstream 99154 18393603 ~ 18460809 (+)
LOC122362573 LOC107668478,LOC107715830,LOC107658962,LOC107594373,LOC107553363 coding upstream 173033 18339199 ~ 18386930 (+)
ugt5f1 LOC107709391 coding upstream 216106 18339143 ~ 18343857 (+)
LOC122323077 LOC107600293,LOC107660691,LOC107735981,LOC107658864,LOC107594385 coding downstream 91466 18654618 ~ 18658740 (+)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107735288,LOC107600237 coding downstream 816883 19380035 ~ 19388663 (+)
LOC122323148 LOC107735994,LOC107660689,LOC107755676,LOC107687769,LOC107600770,LOC107572113,LOC107570700 coding downstream 841169 19404321 ~ 19451211 (+)
LOC122362761 LOC107686603,LOC107662910,LOC107600197,LOC107735331 coding downstream 1036860 19600012 ~ 19603818 (+)
LOC122362762 LOC101886557 coding downstream 1061060 19624212 ~ 19625612 (+)
G127439 NA non-coding upstream 13240 18502441 ~ 18546723 (+)
G127443 clns1a,LOC107594388,LOC107579082 non-coding upstream 31621 18527129 ~ 18528342 (+)
G127434 NA non-coding upstream 41502 18491997 ~ 18518461 (+)
G127431 NA non-coding upstream 72692 18485857 ~ 18487271 (+)
G127413 NA non-coding upstream 207860 18351740 ~ 18352103 (+)
G127460 NA non-coding downstream 10667 18573819 ~ 18574354 (+)
G127492 NA non-coding downstream 127413 18690565 ~ 18693231 (+)
LOC122362700 NA non-coding downstream 767170 19330322 ~ 19348479 (+)
LOC122323165 NA non-coding downstream 889378 19452530 ~ 19480221 (+)
LOC122323166 NA non-coding downstream 924418 19487570 ~ 19568485 (+)
G127292 NA other upstream 419710 18138535 ~ 18140253 (+)
G127258 NA other upstream 631798 17922928 ~ 17928165 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other upstream 672752 17883618 ~ 17887211 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other upstream 745541 17808601 ~ 17814422 (+)
serp1 NA other upstream 1104306 17454154 ~ 17455657 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other downstream 83210 18646362 ~ 18652164 (+)
G127500 NA other downstream 167538 18730690 ~ 18841535 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other downstream 706459 19269611 ~ 19288556 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other downstream 1439852 20003004 ~ 20015706 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other downstream 1504526 20067678 ~ 20093601 (+)

Expression


Co-expression Network