CI01000001_02159372_02162554 (HNRNPA1, ROA1)


Basic Information

Item Value
gene id CI01000001_02159372_02162554
gene name HNRNPA1, ROA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2159159 ~ 2162554 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02159372_02162554.mRNA
GCGTGTGGCGCAGCACGGACAGAAATAGTCGGTAGGATGTCCAAGGAGGGCCAACCACGTGAGCCAGAGCAGCTGCGCAAGCTCTTCATTGGAGGGCTCAGCTTTGAAACCACAGACGATAGTTTGCGAGCGCATTTTGAACAATGGGGAACCTTAACGGATTGTGTGGTGATGAAAGATCCAAACACCAAACGCTCCAGGGGCTTTGGGTTTGTCACCTATTCCAGTGTGACTGAAGTCGACGCCGCTATGGATGCACGCCCCCACAAGGTCGACGGCAGGCTTGTGGAGCCCAAACGAGCCGTGTCTCGAGAGGACTCCAACAAGCCATTTGCTCACACAACCGTGAAGAAGATCTTTGTGGGTGGCATTAAGGATGACACTGAGGAGAACCATCTTCGTGACTACTTCGATGTGTTTGGAAAGATTGAGGCCATTGAGATAATGGTTGACCACAAGACTGGAAACAAAAGGGGCTTTGCCTTTGTTACGTTTGACGACCATGATTCTGTTGATCGTATTGTCATTCAAAAATACCACACTGTGAATGGGCACAACTGTGAAGTCAGGAAAGCTCTATCTAAACAAGAAATGCAGAACACTGGCATGAACATGAGAGGCCGTGGTGGTGGTGGTGGAGGTGGAAACTTCAACAGATATGGCAATAACGGTGGCTACAACAATGACTTCGGAGGCGGTGGTGGCGGCGGTAGTGGCAACCGCGACGGATACTTTGGAAGAGGAGGTAGAGGAGGTAATGGTGGCGGAGGTGGTGGTTATGGAGGAGGTGACTGCTACAACAATGGATTTGGTGGAGATGGCAACTTTGGAGGTGGTGGCGGCGGCGGTGGTGGAAGTGGTAACTACAATGACTTTGGCAACTATAACAACCAGCAGTCCAACTATGGCCCCATGAAAGGGAACTTTGGAAGTGGTGGTGGAGGAGGAAGGAACAGTGGCCCATATGGTGGTGGCTATGGAGGTGGATCCAGTGGTGGATATGGTGGTGGCTCTAGTGGACTGAGTGCTTTAGGAGAGGAGAGCAAGAGAAGTGACAGGGCAGATGCAGGTTTACATCCCTAGATCTGCTCAGCCAAACAGGTTTGGCAGATTTACAGCTGCCACCAGAAGAAGTGTACAGTAGCGCTATCGTGTGTGGGACATCATGAATTTGTCATCATGCAGACTTATTTTATATTGTCTATGGAGGAAAAAGCATTCCAATGAGGTTTTATGTAGAATTACTTTCAGTCGTTATGGTTTTGATTTTTATGTAACCAATCAAGGTGAAATAAA

Function

symbol description
hnrnpa1 Enables identical protein binding activity; nucleic acid binding activity; and protein domain specific binding activity. Involved in several processes, including cellular response to sodium arsenite; nucleocytoplasmic transport; and regulation of telomere maintenance via telomerase. Located in cytoplasm and nucleoplasm. Part of catalytic step 2 spliceosome. Implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Biomarker of Alzheimer's disease; hepatocellular carcinoma; and lung non-small cell carcinoma.

GO:

id name namespace
GO:0051168 nuclear export biological_process

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02159372_02162554.mRNA True 1296 mRNA 0.49 10 2159159 2162554

Neighbor

gene id symbol gene type direction distance location
CI01000001_02141590_02142836 COPZ1, COPZ1.L, COPZ1-B coding downstream 16173 2141560 ~ 2142986 (-)
CI01000001_02126257_02127537 NA coding downstream 31592 2125065 ~ 2127567 (-)
CI01000001_02057429_02071506 LIMA1A coding downstream 87653 2056814 ~ 2071506 (-)
CI01000001_01999489_02002753 IGFBP6B, IGFBP6 coding downstream 156231 1998128 ~ 2002928 (-)
CI01000001_01976950_01992032 GPR182, PIP4K2CA, PIP4K2C coding downstream 165598 1976716 ~ 1993561 (-)
CI01000001_02173311_02179118 NA coding upstream 10216 2172770 ~ 2180987 (-)
CI01000001_02236985_02242725 HOXC1A coding upstream 74028 2236582 ~ 2243993 (-)
CI01000001_02258523_02262621 NA coding upstream 95888 2258442 ~ 2263103 (-)
CI01000001_02274875_02276207 HOXC4, HOXC4A coding upstream 111738 2274292 ~ 2276769 (-)
CI01000001_02286306_02287855 HOXC5A coding upstream 123709 2286263 ~ 2288002 (-)
G14304 NA non-coding downstream 4276 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 7703 2151126 ~ 2151456 (-)
G14300 NA non-coding downstream 10222 2148714 ~ 2148937 (-)
G14297 NA non-coding downstream 15794 2143141 ~ 2143365 (-)
G14293 NA non-coding downstream 40593 2118355 ~ 2118566 (-)
G14335 NA non-coding upstream 205304 2367858 ~ 2368107 (-)
G14194 NA non-coding upstream 235601 2398155 ~ 2398918 (-)
G14344 NA non-coding upstream 240623 2403177 ~ 2403748 (-)
G14214 NA non-coding upstream 307641 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 461753 2624307 ~ 2624520 (-)
G14228 NA other downstream 102681 2055974 ~ 2056478 (-)
G14219 NA other downstream 164261 1994210 ~ 1994898 (-)
G14104 NA other downstream 391701 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1762026 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1901642 238241 ~ 249437 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2229760 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2313730 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2406528 4725927 ~ 4728210 (-)
G15736 NA other upstream 2638347 4800901 ~ 4801395 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location