CI01000001_02258523_02262621


Basic Information

Item Value
gene id CI01000001_02258523_02262621
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2258442 ~ 2263103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_02258523_02262621.mRNA
AGAAAATTTATAAAAACGCCTTTAGTATTCGACAGATTCATTTAACCTGTGTTACAATTTCTTTCACAGATCAGAAACGTTGTGTGTTATCCTTTTTTTCAAAACATGCCGATGGAGAAAGACAAACGATGTATATTACTGAAATATTTTATTCACAAAGAAGCATTGCTAAAACATCTACATGGCTGTTTACTATAGATTAAAAAGATTTTAAAACGATTTTTAAAAGAAATAGGCTATTGACAAGACAAGTGTGGAGCTGTTGTTACAACTGCAAAGCGTTAAATGAATAAATCCTTAACTATAAGGTAAACAAGTCGATTATTTTTAAATACCTACCACAAGAGGACTCAAAAGTAAGTCAAGGTTTCAAAAACTGTAATATAAAACATTATCACGGAAATGAAGTCTGTATTCTGCAATCCATTGTGGCAAAACTAAGAAGACGCGATCCCAGACATGCTTGTCTTTTCTCTGTCCAAATGGGTCTCCTACTCCCACCCACCTCTCAATCACGCTCTCTGAACTCTTGTCAGCACGGTAACAGGGACAGCAGTTCTGCGTGGAGTCAACATGCCGAAGACAATTCATCAAAACATTATGAAGGCCATATTTGGAACCTTCAAAAACTCTCTCATATCCAACAACCCTATTCATCCTCTGCTGATGTCAACTACCCTACGAATGAAACGACAAACTCCCTCGACCATGGGAATGCTACGGAAAGAGACAAGAGATGCAAGCTCTCAACTTCCTGCTTTTCAAGCAAAAAGTATCCATGGATGAGAGAGACACATACACCTATAAACTTCAGCTCCATTAACGTCATGGAATCAGGTGATTCCAGGTACAGCAGTGAAGCTGGAGTACAGGATAACGGCTGTTCTAACAGTAAACGGGCACGTGCAGCATTCACCTCCGCCCAGCTGCTTGAGCTGGAGAAGGAGTTTCACTTCAGCGCTTACCTGTGCCGCCCACGGAGACTTGAAATGGCTGCGCTGCTGAAGCTCACTGACCGCCAGATTAAAATCTGGTTCCAAAACCGTCGCATGAAGTATAAGAAAGATCATAAGGAAAAGTCAATGGCAAAGTCCTGCCTGGAAACAGAGCTGAAGCGCAACCAGAGAAAACAGATTTGGTTTTCTCCTTTCCAAAAAACACAGTCTATTATTACATTTGAGCAAAATTGGACTACAGCACCATTACCGGTGAAGAAGCCAAGGCTTGTGGGCACCGCCCGTGGCAGGGAGGGTTTCAGGACTATCAGCAACATTGCACAATTAATCATAGATTTAACTATATTCTCAACCTTGTTTCCGTTTATAGATTACAATGCAGCATTCGTAATCAAGAGGATGGAAATATAGCCATTTATTCCATTCATTCTGATTAAAGGTACAAATGACTCTGTAATGAATTGTTGAGGCTAAATCACAGATCTAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_02258523_02262621.mRNA False 1448 mRNA 0.40 5 2258442 2263103

Neighbor

gene id symbol gene type direction distance location
CI01000001_02236985_02242725 HOXC1A coding downstream 14449 2236582 ~ 2243993 (-)
CI01000001_02173311_02179118 NA coding downstream 77455 2172770 ~ 2180987 (-)
CI01000001_02159372_02162554 HNRNPA1, ROA1 coding downstream 95888 2159159 ~ 2162554 (-)
CI01000001_02141590_02142836 COPZ1, COPZ1.L, COPZ1-B coding downstream 115456 2141560 ~ 2142986 (-)
CI01000001_02126257_02127537 NA coding downstream 130875 2125065 ~ 2127567 (-)
CI01000001_02274875_02276207 HOXC4, HOXC4A coding upstream 11189 2274292 ~ 2276769 (-)
CI01000001_02286306_02287855 HOXC5A coding upstream 23160 2286263 ~ 2288002 (-)
CI01000001_02289890_02291109 HOXC6.S, HOXC6, HOXC6BA, HOXC6AB, HOXC6A, HOXC6AA coding upstream 25987 2289090 ~ 2291744 (-)
CI01000001_02301569_02304543 HOXC8, HOXC8AB, HOXC8AA, XHOXC8, HOXC8A, HOXC8BA, HOXC8.S coding upstream 38032 2301135 ~ 2304572 (-)
CI01000001_02305032_02310500 HOXC9, HOXC9A, HOXC9AA, HOXC9AB coding upstream 41899 2305002 ~ 2311082 (-)
G14304 NA non-coding downstream 103559 2154382 ~ 2154883 (-)
G14301 NA non-coding downstream 106986 2151126 ~ 2151456 (-)
G14300 NA non-coding downstream 109505 2148714 ~ 2148937 (-)
G14297 NA non-coding downstream 115077 2143141 ~ 2143365 (-)
G14293 NA non-coding downstream 139876 2118355 ~ 2118566 (-)
G14335 NA non-coding upstream 104755 2367858 ~ 2368107 (-)
G14194 NA non-coding upstream 135052 2398155 ~ 2398918 (-)
G14344 NA non-coding upstream 140074 2403177 ~ 2403748 (-)
G14214 NA non-coding upstream 207092 2470195 ~ 2473589 (-)
G14445 NA non-coding upstream 361204 2624307 ~ 2624520 (-)
G14228 NA other downstream 201964 2055974 ~ 2056478 (-)
G14219 NA other downstream 263544 1994210 ~ 1994898 (-)
G14104 NA other downstream 490984 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 1861309 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 2000925 238241 ~ 249437 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2129211 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2213181 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 2305979 4725927 ~ 4728210 (-)
G15736 NA other upstream 2537798 4800901 ~ 4801395 (-)
G16332 NA other upstream 2687586 4950689 ~ 4957842 (-)
CI01000001_02318724_02321379 HOXC10A coding upstream 21512 2318724 ~ 2321379 (-)
CI01000001_02327669_02329891 HOXC11, HOXC11AA, HOXC11AB, HOXC11A coding upstream 30457 2327669 ~ 2329891 (-)
CI01000001_02339253_02340813 HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12 coding upstream 42041 2339253 ~ 2340813 (-)

Expression


Co-expression Network