LOC122323000 (wtip,LOC107594378,LOC107600421,LOC107734993,LOC107712576,LOC107659186,LOC107662496)


Basic Information

Item Value
gene id LOC122323000
gene name wtip,LOC107594378,LOC107600421,LOC107734993,LOC107712576,LOC107659186,LOC107662496
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17887967 ~ 17917268 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216610.1
AGAGATGTTCAgtgtagtttttaattattttctgtggGCTGGGCTATGTGGTTAAATCTTTAATCTGTCCCGCTGGATGAAAGTGGACACACATAGACTCTCCAAAGgactttttttcaggattctgcTCCCCCTTGCTGAGTTGCTCTCTATCATTGTTTCGCTCCGGCATTAACCACATTCCAGAGCGCCGCAGCACGGCCCGTCTCCCTCCGCGCATTCCTCTCACGCGAACGAGTCCCGAGCGAATCGTTTGATACGCGCGCGCTCGCCCACCTACGCGCCCGACGCCGCTCCCGTTTATCGAGAAATTCCCGGGGATTTTTGGGAGAGCCGGAATCGCTGGAAACGGCTTCGCGGGGACAATCGCGGAAAATCAAAGCGAGAAAATTCCTCCGCGCAGCGCGCCATTGACTGTAAAGACCTTTCAACTTTGCAAAAAAACCGAAATTGACAAACGTTCTCCTGAGTGGAAACTTTGTCACGACGACCGTATCGCCACGAATCGACAGGCGGGGATCGCGCACCGCGACGAAATGACGGCGGAGGACTGAGTAATCGCGAACAGGCAACGATGGTTCGCCTGAGGCGGCGTTTTTCCGCGTAAAATGCAGTTTGTGTTGTAGTTGACTAGTGCTCCGCGCGCTCGCCCGTTCAACTCGCCTCAGAGACGACATGGATGGATACGACGAGGATCCGGCGAGCAAACTGATGGAAAACCTCTCCATATTTGACGTTTATCAAGACGGGATGTACACGGAACCGAACCCCGACATGGAGAAAACTAAACGAATGAATGGCAGCTCCGCGCACGGGAACAAAGTCTACGGCGCGGCTCCCCTGCGCTCCGTCAACGGTAACCGACCCTCAGTGCCTCTGGATTTCTGTTCGCCGCAAAGGGACGCGGTTTATCCCGATCCCGACGCGTACTGCACCAAATCCGAAGTTGCCTTGCCGTGTTACAGCGGCGCGTCGGACCGTCTCAGGAGATACACGCAAGCGGAGGTGCAGGCGCACCGGTACAGCGCCGGATGCGCCTACGACGCGCTCATCCTCGGGAAGCAGGTGAGGAGCAACAGCTTATGCGTGGCCACGAGCCCCCGGTCCAGTTTGGCTTCGTCTCACTCGTCGCAGGACCAGAGCAAACACACCAGCCCGAGGTCGAGCATCAGCAGCCCGCGGTCCAGCCTAGTGTCGCCGGGACAGGAGAAGTACTGCGAGGGCAACGGCGCGATCAGCCCCCGCTCGAGCTACGCCAGCACGGCCAGCGACACCAGCAAGCACTCCAGCCCCAGAACCAGCCTCAACAGCTACGACTGCGGGAGCAAACCGAGCAGCAACCGAACCAGCGGCATCAGCATGGGCTACGACCAGCGGCACGTCAGCCCCAGATCTAGCACCACGAGCCCGCGCTCCAGCTACTCTCCCGCGGGGAACCACGAGCAGGAGAGCGGCGCGGTGCACGGCATCCCCATGGCCAGCCCCCGGTCCAGCATCTGCAGCCAGgacggcggcggcggcggcggggGAGTCGCGCGGATCGCCgtggcggcggcggcggcggcggcgaaCTGCGTGGTCAGCCCCCGCTCCAGCATCTCTAGCCACAGCTCCAGGAGTTCGCGGAGCTCCATGAGCGCGTACCCCGAGCTCCAGCACTCCATGCTGGGACCCGGTCTGCCGGAGGACGCGCTGCTGCAGGACTTCACGGAGCCGAACGGCCTCCACAGCAACCGCGTCCACCTCCAAGCGTTTTCCGAGCCGCAGCAGCAGAATTCAGAGGTCAACGTCGCGTTTAACTACGGGAAGATGGGCGCCGGGGGGCAGCGTTTAAAGCTGCCGTACCAAGTCACTCCATCCCGGGACAGCGGCCCCAGTCCGGCGGAGAGGCGCCTTGAGGCCCTCACCCTGGAGCTGGAGAAGGAGCTCGAGATGCACATGAAAAAGGAATATTTCGGTATCTGTGTAAAGTGCGGTAAAGGTGTGTATGGAGCGAGTCAAGCGTGTCAGGCGATGGGGAACCTGTATCATACAAACTGCTTCACCTGCTGCTCCTGCgGACGGAGGCTACGAGGAAAGGCTTTCTATAATGTCAATGGAAAGGTTTACTGTGAGGAAGACTTCCTGTACTCTGGGTTCCAGCAGACAGCAGAAAAATGCTTTGTGTGCGGTCACCTCATCATGGAGATGatCCTTCAGGCTCTGGGTAAGTCGTATCATCCAGGCTGTTTTCGCTGTGTGGTTTGTAAGGAGGGTCTGGACGGTGTCCCTTTCACCGTGGATGTGGAGAACAACATCTACTGTGTGAAAGACTACCACACGGTTTTTGCTCCTAAATGTGCCTCTTGTAACCAGCCCATCCTCCCAGCGCAGggtTCAGAGGAGACCATACGGGTGGTGTCCATGGATAAAGATTACCATGTGGAATGCTATCACTGTGAGGATTGCAGTCTGCAGTTGAACGACGAAGAGGGGCATCGCTGTTACCCGCTGGATGGACACCTGCTGTGCCACCGATGCCACCTGCACCGGTTAAAAACCCCTCATCCGGCCCACCCGCCCCCGAGTTACCCGCTGCACGTCACTGAACTGTGAACACGAAGACGGGAGGACCGCTCCTTCCTCTAAACAATAAACAGGAGCCCATTTGACCGAGCGGGGAGGcttctattattatttcatcCCTCGTCGAGGTTACGGAGGGGTTTGGGCTCGGCGTCCGGCGTTAGGGATCGAAGGGAGACGCTTGCCCGTTTTTTCCTCCTGAACGCCAAACAACAGCACTGAACACGGACTGAGATACGACTTCCTGTGCCTTCATCGGAAATCCTGCGTCGATTGCTGCCTTCGACACGCACCGTTTCTATCTCCTGCCAGATATTTGTGCCAAGCTGCTGGGgtctttaaagggacagttcacctgaAATTATAGCTGCAAACTTGTACGAGCTTTTCTTCCGCGgcagaaatacattaaaatctCATTTCAAGGCAAGAcactacaggaaaaaaaaaactgtttattttgcttCCACAAGAagtccattttttttccctcagtgcatagaaataatctaaaatacacCTTTAAGTTACACTTTAATTATAGTTTTCAGCTAAATACACATTCAGTACACATTCTCTAatcaatatgcatttaattttatagttttattctTATGTATATTCCGAAGGGATGTTTTCATGGTTCGCCTGATATGTAtttaacacataaaaaaaatatgatttattttctgcacattaaataataaaagcccCCTCTGTAAAAACATGccggcaaataaaaaaaaacattgtgcaaattaaagcatttgaaatgcattgtttGAATATCTAAGCATTTTTAATAGAGATACCTTAACTTCATTAAGCACAATCACCTGCATGAAGTcttgctttctaaaaaaaagtatcttgttttcgcttaaaaaaaaaaataaatgtcagaaaatctttattaaaataaattaataattaaaatcttaattcaaagaaaaaacattgttggatatatttttattttaagaataaatcTAGCTTAATGTCTTATATTTTGCAGAAAAGgcttaatatctttattttctgccatgtattttgcatatttaaacatagcGTTTCATAAAACTTGTGATACGAATCAAGGAAAGTATAACGAAACCTATTACCTATTTTCTTAATTAACCTGTGGTGGCTTGCCTTAAACTGTCCATAAATAGTTTGAAGAGGGTGAGCAAATAAGGGTGAACTGTGCTTTTAATCATCGATTTAATGGCAGCAATGGGCCGAACGCTGATGCATCGCTGACGTTTTCTTCACCAGGTGACGTTGTGAAACCTGCTGCACATAGATGGActtacaaatgtatattttgctgTCTGACATGAACCAGGCCGTTACGACCCGACACCAGCAGAACGGGGCTGGATCTGTGAACTCTTACGTCGTGCTCTTCAGACACTGGTTTGTCTCTTGATGAGGTGCCTTCCTGCCTTACCTATTCCTTAACGTGGAGGAGACGCGCTTGCAATGTGTCTCCGGAGACTCTTAAGGGACTCTAGAGGTGCGCAGGGGTCAAAGGTCGCGCCTGGATGTGCTGGACTCAGCCAGGCCCCGGAAACCCGCTGCGCTCGTCCTACGTTTGCGCGGTGCAACGGAGCGCAAGGCAACAGAACATTTTGCACATGTCAGAATAATAGTGAAGTCGTGAAGActatgaaaaaaacacacacgtgtAGAAGTCTGGGAATGATGTCAAAATTACTTCCTCTTGGTCTGGATTCACATCGACGAAAAATTATGCGTTGCTGGAAGCTTATTGCATCACGTCGCACCTGTTTAGGACATAAGTGAGCGTATATGTGGAaaagagagtctgtgtgtgtgtgtgtagttgtgTATATGTTCATGTGCACTAGTGGCTGggccactgtgtgtgtgtgtgtgtgtgtgtctcaaatACCGCGACCTTGATGAGTATTTAGACACTTAAAGatatagtccacccaaaaatgaagccgttagatgagtttgtttcttcatcagattggGATAAATGTAGCATCGCATCAGtgtcagtgaatgggtgccgtcagaatgagagtccaaacggctgataaaaacatcacaggtAATCCACCCCACTCCGGTCTAGCAGTTAACATCTTAGATAGATACAAATCCATCATGTGGaggtttttcatttcaaaccggCGCTCCCAGCTAAAATACGAGTCCATAATAAAGACTAGCAGACGCTGCCTTAtgtgtgcagatttctctcctgattcagaccagattACTTTTCCACAGTATTACAGTTATTACGAAATCATATTTTAGCCGGGGAGGTGCTGCGACGGCCTCCAGCCCGAAccgggctctcattctgacggcacccatccactgcagagcAATGCTGCATCACTGCAAAAAGCTGCTGATAAGAAACGAACTCATCTACATGTCAGACGGCCTGAGGATGAACGGTCTCAAGTGTCTCAAATGCTTCTCGGGTCACTGTTCCACACAGACATCTGTGATACTACTGACAGAACCCGGGTTCTACGTGTTCCCCTCACCCGAGAAGACCCGACACAGAGAGTCGTCTTTGAATCCAGTGACTTCTTATCTGCAAAGCAGACCGTAAAGCTCAAGCGAAGAAGCGTGTTTGCTGACTGATTACCGTACCTGCTCGTCCTGAAGGAAGATCCTGGGTCGATGTACAGCGTCTGTGACATGCTGTCGGCGGCCGGATGAAATCTTTCCCAACCCAAGTGTTTTCTGTGCTAATCGACAGCATGAATATCGAATACGATGACAGAACATATCTCTCTGAACGGTTCAGCAGCCTCAGACGATTCCGCTTTCAGATCATTCCaagtgtttggtttttttttttgtgcataataTTTTTCTCCACGTTGTCTTAATCCACTTTTAAAACGTACTACTATTGCATAGCACAACGCTAGAGTCCCTGTAAATAAAGAGCGTAGAATGTATTTCCTGCATTTATCAGAGATTAGACGAACGGTAGCTTTCCTTCAGttagttctttaaaaaatgcacatctTACGTTCTGTTgcatcacctttttttttttttttttttttttatcgtacAATGTTTCGATTTCCtagatatttcataaataaagaaaaggcAAAGTAGATTTATTTATCTAAACGTGAAAagtttaaagttatttaatgtATGAAGAGTCGGGACGTATCATTTAACCGTAGATTTATGTAATCTGCTTTTTCAATAAAGTGGTTTTTGTAGTTAA

Function

symbol description
wtip Predicted to enable transcription corepressor activity. Acts upstream of or within several processes, including determination of left/right symmetry; establishment of mitotic spindle orientation; and visceral serous pericardium development. Located in ciliary basal body. Is expressed in Kupffer's vesicle; cardiovascular system; nervous system; and pronephros. Orthologous to human WTIP (WT1 interacting protein).

NR:

description
PREDICTED: Wilms tumor protein 1-interacting protein homolog

GO:

id name namespace
GO:0035844 cloaca development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0036064 ciliary basal body cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216610.1 True 5809 mRNA 0.49 8 17887967 17917268

Neighbor

gene id symbol gene type direction distance location
pigb pigb,LOC107600388,LOC107708293 coding upstream 110990 17769658 ~ 17776977 (+)
LOC122363047 unc13c coding upstream 194733 17555210 ~ 17693234 (+)
LOC122362636 LOC107554234,LOC107665407,LOC107713070 coding upstream 387450 17498529 ~ 17500517 (+)
lrch3 lrch3,LOC107735844 coding upstream 405787 17457090 ~ 17482180 (+)
LOC122322924 NA coding upstream 447902 17437151 ~ 17440065 (+)
LOC122362789 kiaa0355,LOC107594396,LOC107734949,LOC107668468,LOC107600920,LOC107712582 coding downstream 19762 17937030 ~ 17969461 (+)
LOC122362666 LOC107712581,LOC107668485,LOC107734866,LOC107659171 coding downstream 66210 17983478 ~ 18070581 (+)
pepd pepd coding downstream 360096 18277364 ~ 18334482 (+)
ugt5f1 LOC107709391 coding downstream 421875 18339143 ~ 18343857 (+)
LOC122362573 LOC107668478,LOC107715830,LOC107658962,LOC107594373,LOC107553363 coding downstream 421931 18339199 ~ 18386930 (+)
G127243 nedd4,LOC107735005,LOC107712575,LOC107659054 non-coding upstream 29818 17857012 ~ 17858149 (+)
G127242 NA non-coding upstream 32156 17854650 ~ 17855811 (+)
G127240 NA non-coding upstream 36254 17818738 ~ 17851713 (+)
G127228 NA non-coding upstream 104264 17782598 ~ 17783703 (+)
G127208 NA non-coding upstream 136716 17750352 ~ 17751251 (+)
G127263 NA non-coding downstream 55282 17972550 ~ 17974502 (+)
G127268 NA non-coding downstream 60407 17977675 ~ 17981341 (+)
G127413 NA non-coding downstream 434472 18351740 ~ 18352103 (+)
G127431 NA non-coding downstream 568589 18485857 ~ 18487271 (+)
G127434 NA non-coding downstream 574729 18491997 ~ 18518461 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other upstream 756 17883618 ~ 17887211 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other upstream 73545 17808601 ~ 17814422 (+)
serp1 NA other upstream 432310 17454154 ~ 17455657 (+)
G127098 NA other upstream 476374 17410685 ~ 17411593 (+)
LOC122322904 NA other upstream 578809 17303769 ~ 17309158 (+)
G127258 NA other downstream 5660 17922928 ~ 17928165 (+)
G127292 NA other downstream 221267 18138535 ~ 18140253 (+)
G127456 rps3 other downstream 642695 18559963 ~ 18563152 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other downstream 729094 18646362 ~ 18652164 (+)
G127500 NA other downstream 813422 18730690 ~ 18841535 (+)

Expression


Co-expression Network