LOC122323013 (olfch1,LOC107564265,LOC107702187,LOC107728082)


Basic Information

Item Value
gene id LOC122323013
gene name olfch1,LOC107564265,LOC107702187,LOC107728082
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5412563 ~ 5415878 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216623.1
GTCTCTGTGATGCTTGTGTTTGGGCTCTTGCTGCTTTGcagcattaaaacaaaaggGGAAACAAAGATTAACTGTAGCATGATAGGGAAACCAGAGTACCCTCTGCTGTCCAAGGATGGAGACATTATTATCGGAGGAGCTTTTTCAATTCACAGCAAAATAAATTTGGACATTCCATCCTTTACAGAGAAGCCCCATCGCCTAATGTGCACCAGccttAATTTGAGAGAATTCCGTTTTGCTCATACCATGATATTTGCCATTGAAGAGATTAACAACAAGACAAGCTTACTCCCAAACATTTCGATTGGATACCAAATATTTGACAGCTGTGGTTCCACATTAGCCTCTATGAGATCATCAATGGCTCTGATGAATGGTCAGGAGTTGACAGCAGAACACATCTGCTCTGGAAACACAGCAGTAAAAGCCATAATTGGAGAATCTGAGTCTTCCTCAACCATTGTGCTGTCCAGAGCAACGGGGCCCTTCAGGATTCCTGTGATAAGCCATTTTGCTACCTGTGCTTGCCTGAGCAACAGAAAACAGTTTCCTTCTTTCTTCAGAACTATTCCCAGTGATTTCTACCAGAGCAGAGCTCTAGCCCAACTGGTCAAACATTTTGGTTGGACATGGGTTGGAGCAGTGAGAAGTGATAATGACTACGGAAACAATGGCATGGCGACTTTTGTAGAGGTAGCAGAGAGAGAAGGAGTATGCATTGAGTATTCAGAAGCTATATCAAGAACAAATTCCAAAGAGAAGATTGCTAAAGTTGTTGAAGTAATAAAAAAGGGCACTGCTAAAGTTCTTGTGGCATTTTTGGCACAGGGTGAAATGGATGTGTTGCTGGAAGAGATCATCAGACAGAATGTGATCGGTCTACAGTGGGTAGGCAGTGAATCCTGGATTACTGCAAGATACTTGGCAACCAAAATTGTTTCAAAAGTCCTCGGTGGTGCAGTTGGCTTTACAATTAGCAAGTCAAAAATTCCAGGCTTGAAAGAATTTCTCCTTAAGGTCAATCCATCTCAAAACCCTTCAAATGCTGTTCTGAGGGAATTTTGGGAGATGGTTTTTGGATGCCGCCTCTTTTCTTCATTCAGCCCTAAAACTGATAATGAGAAGTTTTGTAATGGGTCTGAAAATCTGAGTAACGTGAATAATGAGTTTACGGACGTATCTGAGCTAAGGATttcaaataatgtatataagGCAGTTTATGCTATAGCTTATGCTTTGCATAACACATTGGCTTGCAAAAACTCAAATGGTGCTCCTGAAAACATAACATGTGGAACAAAGGATTTACTTGTTTCCAACCAAGTAATGCAATCTCTTCAAAATGTGAACTTCACAATGGCCTCGGGTGAAATGATATACTTTGACAAAAATGGGGATCCTACGGCAAGATACGAGCTAGTAAACTGGCAGAAAAATGGAGCAGGGGAAATAACCTTTACTACTGTAGGACACTATGATGCCTCCCTAGCCAGTGAACAGCAGTTTGTCATGAATTCTATCAATATAGTTTGGGCAGGAGACAGTCACATGAAACCGAGTTCAGTGTGCAGTGAGAGCTGCCAGCCAGGTTTCAGACAAGCTGTGATCAAAGGGAGACCAGTATGCTGCTTTGAATGTGTGCGGTGCCCTTCTGGAGAAATCAGCAATACGACTGaTTCAGCTGAATGCATCAAATGTCCATTAGAGCACTGGTCAAATGAAAATCACAGTATGTGTGTTCTAAAGAAAGTGGAGTTCCTTTCATTTGAGGAAAACATGGGAATACTTTTGACTGCATTTTCATTAACCGGAGTATCTTTAACAATTGCAGTCGCACTGATGTTTTACCACTTCATAGACACTCCTCTTGTGAAGGCTAGCAATACAGAGCTGAGCTTCCTGCTTCTCTTCTCAttgtctctgtgttttctctgttctcttacTTTCATTGGTCGACCCACTGAGTGGTCCTGTATGTTGCGTCACACAGCATTTGGGATCACTTTTGCTCTTTGTATGTCTTGTGTTCTGGCAAGGACAATAGCAGTGGTAATGGCCTTTAAGGCTACAGTGCCTGGGACGAGTGTTCCTCAGTGTACATTGCCCTTACAAAGAGTTGGtgttttcttttgcactttttttcagGTAATAATATGCACTCTGTGGCTGGTATTAGCCCCTCCAATACCGTATAAAAATATTACCCATTCATTAGATACAATAATACTTGAATGCAATCTAGGATCAGCTATAGGGTTCTGGGCTGTGCTTGGTTATATTGGTTTGCTGTCTGTcctatgttttattttggcttttCTCGCTCGAAAGCTGCCTGATAATTTTAATGAAGCCAAATTCATTACATTCAGTCTGCTAATATTCTGTGCTGTATGGATCACATTTATTCCAGCTTATGTCAGTTCTCCTGGAAAATTTACTGTAGCTGTGgagatatttgccattttagccTCAAGTTTTGGTTTGTTATTCTGTATATTTACACCAAAATGCTACGTTATCCTACTCAAGCCAGagcaaaacacaagaaaacatatCATGGGCAAAACcaataataaatcacaataa

Function

symbol description
olfch1 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216623.1 True 2589 mRNA 0.41 6 5412563 5415878

Neighbor

gene id symbol gene type direction distance location
LOC122322940 LOC107742941,LOC107564271,LOC107557161,LOC107748627,LOC107557163,LOC107748628,LOC107702193,LOC107557162 coding upstream 3035 5406338 ~ 5409528 (+)
LOC122322926 LOC107742941,LOC107564271,LOC107557161,LOC107702193,LOC107742944,LOC107564269,LOC107557163,LOC107748628 coding upstream 23211 5385095 ~ 5389352 (+)
LOC122322947 LOC107564267,LOC107702191 coding upstream 30599 5370085 ~ 5381964 (+)
LOC122322946 olfcg5,LOC107564274,LOC107702188,LOC107728083,LOC107680406,LOC107719307,LOC107569497,LOC107739792 coding upstream 62066 5347164 ~ 5350497 (+)
LOC122322945 LOC107674897 coding upstream 79708 5331203 ~ 5332855 (+)
LOC122323107 olfcj1,LOC107742780,LOC107564264 coding downstream 2606 5418484 ~ 5421716 (+)
LOC122363149 LOC107564267,LOC107702191,LOC107742931,LOC793043 coding downstream 9788 5425666 ~ 5428964 (+)
LOC122363154 olfcd2,LOC107751723,LOC107572101,LOC107557163,LOC107702193,LOC107748628,LOC107742944,LOC107557161,LOC107564269 coding downstream 18996 5434874 ~ 5438100 (+)
LOC122363145 LOC107702194,LOC107564272,LOC107742940,LOC107748628,LOC107557162,LOC107557161,LOC107702193,LOC107748627,LOC107742944,LOC107671077 coding downstream 34495 5450373 ~ 5453739 (+)
LOC122322890 LOC107748625,LOC107557160,LOC107748628,LOC107557163,LOC107702193,LOC107742944,LOC107557161,LOC107564269,LOC107671077 coding downstream 41955 5457833 ~ 5461234 (+)
G124595 NA non-coding upstream 57583 5354713 ~ 5354980 (+)
G124544 NA non-coding upstream 229026 5011405 ~ 5183537 (+)
G124547 NA non-coding upstream 354725 5056750 ~ 5057838 (+)
G124533 NA non-coding upstream 504394 4903768 ~ 4908169 (+)
G124506 NA non-coding upstream 655944 4756230 ~ 4756619 (+)
G124622 v2rx1,LOC107703364,LOC107568274,LOC107716020 non-coding downstream 244028 5659906 ~ 5660233 (+)
G124672 NA non-coding downstream 605363 6021241 ~ 6021636 (+)
G124673 NA non-coding downstream 607781 6023659 ~ 6023991 (+)
G124703 NA non-coding downstream 811603 6227481 ~ 6230584 (+)
LOC122362614 NA non-coding downstream 874644 6290522 ~ 6290901 (+)
G124598 NA other upstream 17251 5394895 ~ 5395312 (+)
G124580 NA other upstream 182617 5228563 ~ 5229946 (+)
G124577 NA other upstream 186506 5225808 ~ 5226057 (+)
G124553 NA other upstream 271892 5139490 ~ 5140671 (+)
G124548 NA other upstream 301930 5071645 ~ 5110633 (+)
LOC122363125 LOC107702192,LOC107742943,LOC107564270,LOC107557162,LOC107702193,LOC107742944,LOC107748627,LOC107671076,LOC107748628,LOC107564269,LOC107702194,LOC107671077,LOC107557163 other downstream 76359 5492237 ~ 5495793 (+)
LOC122323196 v2ra17,v2ra16,LOC107695207,LOC107568277,LOC107716837,LOC107695208,LOC107568268,LOC107568349 other downstream 203592 5619470 ~ 5624977 (+)
G124612 v2ra17,LOC107568349,LOC107568268,LOC107703349,LOC107695207,LOC107722082,LOC105904790,LOC107695201 other downstream 207575 5623453 ~ 5629653 (+)
G124661 NA other downstream 560332 5976210 ~ 5979282 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other downstream 604671 6020549 ~ 6029121 (+)

Expression


Co-expression Network