rpl4 (rpl4,LOC107686296,LOC107596972,LOC107718306,LOC107583768,LOC107672218)


Basic Information

Item Value
gene id rpl4
gene name rpl4,LOC107686296,LOC107596972,LOC107718306,LOC107583768,LOC107672218
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4740143 ~ 4743910 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216673.1
GTGACATATGTCGGATGGATATGAAAGTGCCGGTGGAGTGGtttcttcttccttttcttCCGTGGCCGCCATCGAGTTAGGAGCGTGGTTCCTGGCGAGCCGTGAAAACTTACAATAATGacTTGCGCCAGGCCGTTAATTACGGTCTTCTCCGAGAAAGGGGAGACATCCGGCAAAAATGTGGTTCTTCCTGCAGTGTTCAGGGCTCCCATTCGCCCTGATGTTGTGAACTTTGTGCATACCAACATGCGCAAGAACAAGCGCCAGCCCTATGCTGTCAGTGCACTGGCCGGTCACCAGACCAGCGCTGAGTCCTGGGGCACAGGAAGAGCCGTGGCCCGTATTCCCCGTGTCCGCGGTGGTGGTACCCACCGCTCCGGACAGGGTGCTTTCGGAAATATGTGTCGTGGTGGCCGCATGTTTGCCCCCACAAAGACCTGGCGCCGTTGGCACCGCAGGGTTAACATTAACCAGAAGCGTTATGCCATCTGCTCTGCCCTGGCTGCCTCTGCTCTGCCTGCCCTGGTCATGGCCAAAGGTCACCGCATTGAGGAGATTCCTGAGGTACCACTTGTTGTTGATGATAAAGTTGAAGGATACAAGAAGACTAAGGAGGCCGTGCTTCTGTTGAAGAAGCTTAAGGCATGGAACGACATCAAGAAGGTTTACGCCTCTCAGCGCATGCGCGCTGGTAAGGGTAAGATGAGGAACCGAAGGCGTATCCAGCGCAAGGGACCATGCATCATCTACAACGAAGACAACGGTGTGACACGAGCATTCAGAAACATCCCTGGTGTCACACTGCAGTCTGTGAGCAGACTGGACTTGTTGAAGCTTGCTCCAGGTGGACACATTGGACGTTTTTGCATTTGGACTGAGGGTGCATTCCGCAAATTGGATGATCTCTATGGCACTTGGCGTAAAGCCTCCTCCCTTAAAGTGGACTACAACTTGCCCATGCACAAAATGAACAACACAGATCTGCACAGAATCCTGAAGAGTGAAGAGGTCCAAAAGGCACTTCGTCCTGCTAAACACAAGATTCATCGCAGAGTGCTCAAGAAGAACCCTCTGAAGAATCTGAGAGTGATGTTGAAGCTAAACCCCTATGCCAAGTCAGTCCGTCGCCGTGCTATCCTGGCACACAACCCTGAAATCAAGGCCAAGATGTTGAAACCCAAGAAGAAGAGGGTTGTGAAGAAGAATAAGGGCAAGAAGCCTGCAGCTGCTCCTGCTCCGGCCCCTGCCCAAGCTTAAACCTCATGAACAGACTATGGAGTTCAcaaatgattttcaaataaaacagcCGTTGAAAATTCTGA

Function

symbol description
rpl4 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and eye. Orthologous to human RPL4 (ribosomal protein L4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02930 RP-L4e, RPL4; large subunit ribosomal protein L4e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216673.1 True 1322 mRNA 0.52 10 4740143 4743910

Neighbor

gene id symbol gene type direction distance location
lctlb lctlb,lctl,LOC107596968,LOC107686298,LOC107738718 coding upstream 4676 4726450 ~ 4735467 (+)
snapc5 snapc5,LOC107672220,LOC107596973,LOC107686356,LOC107583772 coding upstream 14531 4723039 ~ 4725612 (+)
aagab aagab,LOC107596965,LOC107686304,LOC107738712,LOC107718310,LOC107672261,LOC107583761 coding upstream 151441 4585189 ~ 4588702 (+)
kif23 kif23,LOC107708211,LOC107672274,LOC107686310 coding upstream 438265 4292237 ~ 4301878 (+)
paqr5a paqr5a,LOC107686313,LOC107596958,LOC107738698 coding upstream 448682 4287447 ~ 4291461 (+)
LOC122363106 olfcg4,LOC107751720,LOC107663261,LOC107572100,LOC107662185,LOC107728083,LOC107680406,LOC107564274,LOC107702188 coding downstream 571012 5314922 ~ 5318185 (+)
LOC122322945 LOC107674897 coding downstream 587293 5331203 ~ 5332855 (+)
LOC122322946 olfcg5,LOC107564274,LOC107702188,LOC107728083,LOC107680406,LOC107719307,LOC107569497,LOC107739792 coding downstream 603254 5347164 ~ 5350497 (+)
LOC122322947 LOC107564267,LOC107702191 coding downstream 626175 5370085 ~ 5381964 (+)
LOC122322926 LOC107742941,LOC107564271,LOC107557161,LOC107702193,LOC107742944,LOC107564269,LOC107557163,LOC107748628 coding downstream 641185 5385095 ~ 5389352 (+)
LOC122323045 NA non-coding upstream 48199 4688034 ~ 4691944 (+)
G124425 NA non-coding upstream 262264 4476547 ~ 4477879 (+)
G124427 NA non-coding upstream 278019 4461845 ~ 4462124 (+)
G124295 NA non-coding upstream 556492 4182733 ~ 4183651 (+)
G124294 cftr,LOC107583749,LOC107738689,LOC107596947,LOC107672176,LOC107708216 non-coding upstream 557752 4181385 ~ 4182391 (+)
G124497 NA non-coding downstream 850 4744760 ~ 4745307 (+)
G124498 NA non-coding downstream 1693 4745603 ~ 4745835 (+)
G124499 NA non-coding downstream 2595 4746505 ~ 4747183 (+)
G124501 map2k1,LOC107672217,LOC107583767,LOC107686295,LOC107596971,LOC106592363 non-coding downstream 3391 4747301 ~ 4748814 (+)
G124500 NA non-coding downstream 5485 4749395 ~ 4749694 (+)
nrn1la LOC107726468,LOC107694939,LOC107583849,LOC107596927,LOC107733575,LOC107672183 other upstream 996387 3719888 ~ 3743756 (+)
tmem170a tmem170a,LOC107596918,LOC107583727 other upstream 1185453 3511957 ~ 3554690 (+)
chd2 chd2,LOC107690375,LOC107715217,LOC107693036,LOC107715589 other upstream 2278353 2410733 ~ 2461790 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other upstream 2421003 2301758 ~ 2319140 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other upstream 2499883 2207199 ~ 2240260 (+)
LOC122322928 megf11,LOC107596974,LOC107686294,LOC107672222 other downstream 15718 4759628 ~ 4795836 (+)
G124548 NA other downstream 327735 5071645 ~ 5110633 (+)
G124553 NA other downstream 395580 5139490 ~ 5140671 (+)
G124577 NA other downstream 481898 5225808 ~ 5226057 (+)
G124580 NA other downstream 484653 5228563 ~ 5229946 (+)

Expression


Co-expression Network