ompa (omp,ompa,LOC107735103,LOC107660685)


Basic Information

Item Value
gene id ompa
gene name omp,ompa,LOC107735103,LOC107660685
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17425154 ~ 17425977 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216683.1
ATGGCTTCAGAGACGGAGCTGAGCTTCAGCGAGGACCTGCAGCTGACCGAGGTCATGCGTCTGAGGGTCCAGTCGCTGCAGCAGAAGGGTCAGAAGCGGCAGGACGGAGAGAGGCTTCTCCTGCCTCACGAGTCCGTTTACCGGCTGGACTTCAGCGAGCAGGACCTGAGCTTCCTCCGCTGGAACGTCAGCCTGCGAGGAACCGGACGCTTCACCGTCACCGGCATCTGCCAGCTCTGGACGCCCGATCTGACCAACCTGATGACCAGGCAGCTGCTGGACCCCATCGGCCAGTTCTGGAGGAACGCCGGGGACCCCGAGGACCTGCCCATCAAGTGTCTGGAGGCGGACATCCAGGAGTTCGGAGAGAGGATCGCGGAGCTGGCCAAAGTGCGGAAAGTCATGTACTTTCTGTTCGCGTTCAAAGAGGGAGCGACCAAAGACAACATCTCCTGCTCTTTGACCTTCGGCAAAAACCACTGAGAGAAGGCACCTCTCCAGGCGTCGCTTCCTAACGTCCCCGTGAGGttaaaacctttattatttAACCTTCATAGCTTTACTTCTCATCCTGCTGTCCAGAAGAGCGACACTTTAGAAAGATTGTAAGTGCATGCGTTTCGTTGGTTCCTATGTAATGCTCGGTGAATAAAACCAGTGTCATGTCACTCGTATGGTTTCCTGTGAATGCTTTGATATTCAGGAGTTtggaaagaatgaatgaaagggATTTCTTCACATGAATGTTTCTTCCACGGCGTCGCTGTGAAGCTTTCAAGTGCTTCAGAAAGTCTTCGAGAGATCCGGTGCACCCGAAAAACCTC

Function

symbol description
ompa Predicted to act upstream of or within sensory perception of smell and signal transduction. Is expressed in eye; olfactory epithelium; and retinal inner nuclear layer. Orthologous to human OMP (olfactory marker protein).
omp Predicted to be involved in sensory perception of smell. Predicted to act upstream of or within neurogenesis. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including axon; cytosol; and neuronal cell body.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216683.1 True 824 mRNA 0.54 1 17425154 17425977

Neighbor

gene id symbol gene type direction distance location
unc13c unc13c,LOC107554226,LOC107665324,LOC108411445 coding upstream 70306 17325966 ~ 17354848 (+)
LOC122362967 NA coding upstream 325592 17079059 ~ 17099562 (+)
LOC122362752 LOC107665215,LOC107595393 coding upstream 355335 17067094 ~ 17069819 (+)
LOC122363001 NA coding upstream 453790 16958824 ~ 16971364 (+)
ulk3 ulk3,LOC107665498,LOC107681021,LOC107595383 coding upstream 595800 16819287 ~ 16829354 (+)
LOC122322924 NA coding downstream 11174 17437151 ~ 17440065 (+)
lrch3 lrch3,LOC107735844 coding downstream 31113 17457090 ~ 17482180 (+)
LOC122362636 LOC107554234,LOC107665407,LOC107713070 coding downstream 72552 17498529 ~ 17500517 (+)
LOC122363047 unc13c coding downstream 129233 17555210 ~ 17693234 (+)
pigb pigb,LOC107600388,LOC107708293 coding downstream 343681 17769658 ~ 17776977 (+)
G126906 NA non-coding upstream 146569 17278206 ~ 17278585 (+)
G126903 NA non-coding upstream 167791 17256811 ~ 17257363 (+)
G126893 NA non-coding upstream 252849 17172005 ~ 17172305 (+)
LOC122362576 NA non-coding upstream 286019 17136635 ~ 17139135 (+)
G126881 NA non-coding upstream 391814 17031550 ~ 17033340 (+)
G127103 NA non-coding downstream 18984 17444961 ~ 17446064 (+)
G127110 NA non-coding downstream 23494 17449471 ~ 17449801 (+)
LOC122322999 NA non-coding downstream 89682 17515659 ~ 17520724 (+)
LOC122323095 NA non-coding downstream 95647 17521624 ~ 17527930 (+)
G127195 NA non-coding downstream 269357 17695334 ~ 17695593 (+)
G127098 NA other upstream 13561 17410685 ~ 17411593 (+)
LOC122322904 NA other upstream 115996 17303769 ~ 17309158 (+)
LOC122362575 NA other upstream 253819 17129922 ~ 17171335 (+)
G126884 ctxn2 other upstream 347995 17074194 ~ 17077159 (+)
G126820 NA other upstream 606755 16753709 ~ 16818399 (+)
serp1 NA other downstream 28177 17454154 ~ 17455657 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other downstream 382624 17808601 ~ 17814422 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other downstream 457641 17883618 ~ 17887211 (+)
G127258 NA other downstream 496951 17922928 ~ 17928165 (+)
G127292 NA other downstream 712558 18138535 ~ 18140253 (+)

Expression


Co-expression Network