pigb (pigb,LOC107600388,LOC107708293)


Basic Information

Item Value
gene id pigb
gene name pigb,LOC107600388,LOC107708293
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17769658 ~ 17776977 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216686.1
ACGTCACCGCCCAGACGCGGAAGTAGACGCGTCCCGACGTTCGGCTCGTAACGACGCGCCTCAGGACGAACGAACGAACGCATGCGGTCGGGGTTGAAATGCTGAAGCTTAGACCGGGTCCGAGGCTCGAGCGGAGACATGGAGAGGATTCGGGAGCGCTTCAAGCCGAGCGAGTCCTCGAGTGAATCAGTGAGGCTGAGGAAGAGGAGCTCCATCCTGTACAACACAGACGTCACGCAGCCCCAGACACCCAAATTCTTCGGGATCAGCGTCGCCGTTTTCTCGGTCGTGTTTCGCCTGCTCAACTGCGTCCTGGTCCAGACCAGCTTCGTCCCGGACGAGTACTGGCAGTCTCTGGAGGTCTCCCATCGAATGGTCTTCAAGTATGGCTACGAGACGTGGGAGTGGAAGGAAGGCATCCGGGGGTGTTCTTATCCTCTCCTGTTCGCCCTGATGTACAGACTCCTGCATCTGATGAACTACGACACGGTTTATTTATTGGTGTTTGCGCCGCGTGTTTTCCAGGCGCTGCTGGCCGCGTACGCAGACGTGAAGCTGCATAACCTCGTCCTGCGGTGGGAGACTCCGGACGTGGCCAAATGGACGtttttctgCCAGCTGTGTTCGTGGTTCACCTGGTTCTGCTGCAGCCGGACTTTGACCAACACTATGGAAACGGTTCTGACCACCCTGGCGCTTAGCTATTTCCCTTTACCCGGCTCTCAAACGCAAAACAGCTGGAAGTATCTGTCTCTGGTGTCGCTGGCCGTCGTCGTTCGCCCCACCGCCCTGATCGTCTGGCTTCCTCTGCTCTTCTATCATTTCTGCGTTGATCAGAACAAGCTGAAGCTCGTCACGCAGCGATGCTTCCCCATTGCGGCTCTCGCTCTGGCCGTCTCCACGCTTACAGACTCTGTGTGCTATGGAAagTGGATCGTGGTCCAGTGGAACTTCCTGAAGTTTAACGTGCTGCACAACGTGGCCGAGGTTTACGGCTCTCACCCGTGGCACTGGTACTTCAGTCAGGGTCTGCCGGTCGTGATCGGCCCGCACCTCCCTCTCGTCCTGCACGGATGTTCTCTGGCCACCAGAAAGCACCGGATCCTGCTGATAACCATCCTGTGGACCACAGCTGTGTACAGTTTGCTCGCACACAAGGAGTTCCGGTTTGTTTATCCCGTGCTGCCGTTCTGTATGATATTTAGCGGGATGTCTCTAGCGAAGCTGCACGCGTGGAGGAAGCCTGCCGCCGCCGCCCTGCTGCTCTTCAATCTGATTCCTGCCTTGTATACGGGTTTGATTCACCAGCGGGGAGCTCTGGACGTCATGCGCGACCTGCAGGGACTGTGTGACCCCGGCGACTCTCAGAGGTCACCTGAGCTGCTGTTCCTCATGCCCTGTCACTCCACACCGCTCTACAGTCACCTGCACTGTCCCCTCAAAGTGCGCTTCCTCGAGTGTCCTCCAGATCTCACGGGAAACGAGGAGTACGTGGACGAAGCCGACGTGTTCTTCTCCGACCCTCTTCACTGGCTCCGGACGTCCTTCCCGTCTCAGTCCGCCTCACCTTCACACATAGTGCTGTTCGACTGCCTGGAGAAGGAGATTTCGTCATTCCTGGAGAAAAACCGATTCGCCAAACAAGCCGAAATCTTCCACACGCACTTTCCtgaaggtcgagtgggaagaaacatattaatatacacCAGAGGATCTGCACCGAACGCCCACtgaagttttgtgtttttgccaCACTCCAGAGTAAGATCGGGTCTGTTTTAGCTCGAAGCAGGAGGACGACCGTCAACCAAGCAGTGAAAGACTTTTATTCTGAAGTTTTGAGTGCAACATTAAGCAGTTTAAGTGCATTTGTGTTCAATTACAAACAAGGAATGTCATTTAGCCGATAAGCACACAGACGAGAAGAAGGGGAAAATAGTGCAGATTGAcactttaataactttaaataatatcttCTGCTGATCTGCATGTTCAAATAAAACTGGTAACAGACACCAGATTACTTCAAAGTGCA
>XM_043216687.1
CCGGGTCCGAGGCTCGAGCGGAGACATGGAGAGGATTCGGGAGCGCTTCAAGCCGAGCGAGTCCTCGAGTGAATCAGTGAGGCTGAGGAAGAGGAGCTCCATCCTGTACAACACAGACGTCACGCAGCCCCAGACACCCAGTGAGAGTCCTGCTCCTCACTTTACACCTGTTTCACAGTTCAACCTCTTTAGCAATCTCTAAATAACCCAAGAATTCTTCGGGATCAGCGTCGCCGTTTTCTCGGTCGTGTTTCGCCTGCTCAACTGCGTCCTGGTCCAGACCAGCTTCGTCCCGGACGAGTACTGGCAGTCTCTGGAGGTCTCCCATCGAATGGTCTTCAAGTATGGCTACGAGACGTGGGAGTGGAAGGAAGGCATCCGGGGGTGTTCTTATCCTCTCCTGTTCGCCCTGATGTACAGACTCCTGCATCTGATGAACTACGACACGGTTTATTTATTGGTGTTTGCGCCGCGTGTTTTCCAGGCGCTGCTGGCCGCGTACGCAGACGTGAAGCTGCATAACCTCGTCCTGCGGTGGGAGACTCCGGACGTGGCCAAATGGACGtttttctgCCAGCTGTGTTCGTGGTTCACCTGGTTCTGCTGCAGCCGGACTTTGACCAACACTATGGAAACGGTTCTGACCACCCTGGCGCTTAGCTATTTCCCTTTACCCGGCTCTCAAACGCAAAACAGCTGGAAGTATCTGTCTCTGGTGTCGCTGGCCGTCGTCGTTCGCCCCACCGCCCTGATCGTCTGGCTTCCTCTGCTCTTCTATCATTTCTGCGTTGATCAGAACAAGCTGAAGCTCGTCACGCAGCGATGCTTCCCCATTGCGGCTCTCGCTCTGGCCGTCTCCACGCTTACAGACTCTGTGTGCTATGGAAagTGGATCGTGGTCCAGTGGAACTTCCTGAAGTTTAACGTGCTGCACAACGTGGCCGAGGTTTACGGCTCTCACCCGTGGCACTGGTACTTCAGTCAGGGTCTGCCGGTCGTGATCGGCCCGCACCTCCCTCTCGTCCTGCACGGATGTTCTCTGGCCACCAGAAAGCACCGGATCCTGCTGATAACCATCCTGTGGACCACAGCTGTGTACAGTTTGCTCGCACACAAGGAGTTCCGGTTTGTTTATCCCGTGCTGCCGTTCTGTATGATATTTAGCGGGATGTCTCTAGCGAAGCTGCACGCGTGGAGGAAGCCTGCCGCCGCCGCCCTGCTGCTCTTCAATCTGATTCCTGCCTTGTATACGGGTTTGATTCACCAGCGGGGAGCTCTGGACGTCATGCGCGACCTGCAGGGACTGTGTGACCCCGGCGACTCTCAGAGGTCACCTGAGCTGCTGTTCCTCATGCCCTGTCACTCCACACCGCTCTACAGTCACCTGCACTGTCCCCTCAAAGTGCGCTTCCTCGAGTGTCCTCCAGATCTCACGGGAAACGAGGAGTACGTGGACGAAGCCGACGTGTTCTTCTCCGACCCTCTTCACTGGCTCCGGACGTCCTTCCCGTCTCAGTCCGCCTCACCTTCACACATAGTGCTGTTCGACTGCCTGGAGAAGGAGATTTCGTCATTCCTGGAGAAAAACCGATTCGCCAAACAAGCCGAAATCTTCCACACGCACTTTCCtgaaggtcgagtgggaagaaacatattaatatacacCAGAGGATCTGCACCGAACGCCCACtgaagttttgtgtttttgccaCACTCCAGAGTAAGATCGGGTCTGTTTTAGCTCGAAGCAGGAGGACGACCGTCAACCAAGCAGTGAAAGACTTTTATTCTGAAGTTTTGAGTGCAACATTAAGCAGTTTAAGTGCATTTGTGTTCAATTACAAACAAGGAATGTCATTTAGCCGATAAGCACACAGACGAGAAGAAGGGGAAAATAGTGCAGATTGAcactttaataactttaaataatatcttCTGCTGATCTGCATGTTCAAATAAAACTGGTAACAGACACCAGATTACTTCAAAGTGCA

Function

symbol description
pigb Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 80. Orthologous to human PIGB (phosphatidylinositol glycan anchor biosynthesis class B).

NR:

description
GPI mannosyltransferase 3 isoform X4

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K05286 PIGB; GPI mannosyltransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216686.1 True 2035 mRNA 0.54 12 17769658 17776977
XM_043216687.1 False 1994 mRNA 0.53 12 17769771 17776977

Neighbor

gene id symbol gene type direction distance location
LOC122363047 unc13c coding upstream 76424 17555210 ~ 17693234 (+)
LOC122362636 LOC107554234,LOC107665407,LOC107713070 coding upstream 269141 17498529 ~ 17500517 (+)
lrch3 lrch3,LOC107735844 coding upstream 287478 17457090 ~ 17482180 (+)
LOC122322924 NA coding upstream 329593 17437151 ~ 17440065 (+)
ompa omp,ompa,LOC107735103,LOC107660685 coding upstream 343681 17425154 ~ 17425977 (+)
LOC122323000 wtip,LOC107594378,LOC107600421,LOC107734993,LOC107712576,LOC107659186,LOC107662496 coding downstream 110990 17887967 ~ 17917268 (+)
LOC122362789 kiaa0355,LOC107594396,LOC107734949,LOC107668468,LOC107600920,LOC107712582 coding downstream 160053 17937030 ~ 17969461 (+)
LOC122362666 LOC107712581,LOC107668485,LOC107734866,LOC107659171 coding downstream 206501 17983478 ~ 18070581 (+)
pepd pepd coding downstream 500387 18277364 ~ 18334482 (+)
ugt5f1 LOC107709391 coding downstream 562166 18339143 ~ 18343857 (+)
G127208 NA non-coding upstream 18407 17750352 ~ 17751251 (+)
G127207 NA non-coding upstream 19482 17749391 ~ 17750176 (+)
G127195 NA non-coding upstream 74065 17695334 ~ 17695593 (+)
LOC122323095 NA non-coding upstream 241728 17521624 ~ 17527930 (+)
LOC122322999 NA non-coding upstream 248934 17515659 ~ 17520724 (+)
G127228 NA non-coding downstream 5621 17782598 ~ 17783703 (+)
G127233 NA non-coding downstream 17884 17794861 ~ 17933819 (+)
G127240 NA non-coding downstream 41761 17818738 ~ 17851713 (+)
G127242 NA non-coding downstream 77673 17854650 ~ 17855811 (+)
G127243 nedd4,LOC107735005,LOC107712575,LOC107659054 non-coding downstream 80035 17857012 ~ 17858149 (+)
serp1 NA other upstream 314001 17454154 ~ 17455657 (+)
G127098 NA other upstream 358065 17410685 ~ 17411593 (+)
LOC122322904 NA other upstream 460500 17303769 ~ 17309158 (+)
LOC122362575 NA other upstream 598323 17129922 ~ 17171335 (+)
G126884 ctxn2 other upstream 692499 17074194 ~ 17077159 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other downstream 31624 17808601 ~ 17814422 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other downstream 106641 17883618 ~ 17887211 (+)
G127258 NA other downstream 145951 17922928 ~ 17928165 (+)
G127292 NA other downstream 361558 18138535 ~ 18140253 (+)
G127456 rps3 other downstream 782986 18559963 ~ 18563152 (+)

Expression


Co-expression Network