XLOC_006744 (vti1b)


Basic Information

Item Value
gene id XLOC_006744
gene name vti1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33040436 ~ 33054856 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012986
GAGGTCCAACACGGAAGCGTGAGCTGCAGTCCCGAGGATTTTGTTATTGCCCGAGAAGCTGATTTTTCCCTATTGTTTCGTACCACAACAGACTTCAAATTTTCGCTCTTTTATtctgttgtcatttattttgtttatttgctttagaCTTCGTTTGTTCCACTATGTCTTCAGAGGAGTTTGAAAAGCTGCATGAGATGTATAAATCTCTGTATGACGAAGTGAAGTTGATGCCAGAACGGGTGCAGAAGAGCCAGGGAGagGAAAGGAAGAGAATTGTCAGAGACTTTGATGAGCGTGTTTCAGAGGCTGAAGAAGTGCTTCAGGGTATGGAGCAGGAGCTGTTTGGTGCTCCATCATCCTTCCGAACCCCCATGTCAACAAAGATTCGACTGTACCGACGAGATCTAGCCAAACTGCAGAGAGATATTCGGCTATCAGCAACACCAGGGCTTACAGGTCAGCTCGGGGACAGCAGACTTGGTGTTTATGCCTCACAGAATGACCAGAGTACTCATCTTCAGTCACAGCGTGCTTTGCTAATCCAGGGGACAGAGTCTCTAAATAATGCGTCAAAAAGTATTGAGCGAAGCCAGCGGATTGCGGCAGAGACCGACCAGATTGGCACAGACATCATTGAGGAGCTCGGAGAGCAAAGAGAGCAGCTGGACCGCACCAGAGATAGATTGGTTAACACTGGAGAGAACCTGAGCCGGAGCAGGAAGATCCTGCGCGCAATGTCCAGACGGATCGTGACGAACAAACTGCTcctctccatcatcatcatcatggagGTGGCCATCTTAGGGGGTGTGGTGTACTTGAAGTTCTTTCGCAAGTAGGCAGTGAGATACACAAGACTCTCTCCCTTTTCTTCTTCCTGATTTTCATGAGTTTCTGACCTGGCAACAATGTGCTGGATGCTTTCGTGACTGTTAGTGTCACATGGACTTGTATGAGAGGTTATTTTTAGTGCTAAACTTTATAAGCATAAGCACCGCTCTCAGGGTGAGATGAAGACATTCACCATTGTACATTGACTTCTGGAGGACTTGTGTTAACAGGAGAAATTGTGTTACTTCACCCTCAGCGGTTTAAAAAAGATGCCAAGGTGATCTGGTGGATGGTTGAATGGTGTAAATGAAGCATCCAGTGGAATGAGTGGAAAAagaacatatacagtatattatatacaTCTCTTTTACAGTGCTCAATCACTTTAGaggatagttcactccaaaatgatGTAATTCTGTAGTAATTTATTGACTTTTTGTGTCAATCCAAGACATGTTTTCTATACTGTGAAACTTTTGGATGGCACTGAACTTCATTGCACTGCTAAAAACATTCTTCTGACTATTTTCTATTGTAATATATTGACCAAAATAGATTGAAGAAAGTCTTAAATCTTTGGAGTTGCGTGtatgtaaaatattttggagtGAATCATCCCTTTAAAACTGAACTTTTAAGTAAATTGTGtgttaaattagttttgtttttgaggTGGCATTAAAGGTATCAtctctttgtttttgttcttgaaatgggtgtttgttttccttttgtttttccaCCAATCAGCCAAACAGAGCTGAGTTTACCTCAGGCCAAGAGATTGACAGCTATAAACAAGCTAGTCATTTTATTTGTGAGCCCTGATTGGTGGAGAAAAGGGGTGTGTTTGGCCTGTCAGATAAGGGGGACAGATGTTACTGTAAACATGACTGATATTAAAGTGACACAAACACCTGTTATATATTAAAGACTAGCATCGAGGGCCGTCAAGCCACTTTGACAT
>TCONS_00012987
TATCATCACGAGGTCCAACACGGAAGCGTGAGCTGCAGTCCCGAGGATTTTGTTATTGCCCGAGAAGCTGATTTTTCCCTATTGTTTCGTACCACAACAGACTTCAAATTTTCGCTCTTTTATtctgttgtcatttattttgtttatttgctttagaCTTCGTTTGTTCCACTATGTCTTCAGAGGAGTTTGAAAAGCTGCATGAGATGTATAAATCTCTGTATGACGAAGTGAAGTTGATGCCAGAACGGGTGCAGAAGAGCCAGGGAGagGAAAGGAAGAGAATTGTCAGAGACTTTGATGAGCGTGTTTCAGAGGCTGAAGAAGTGACTCATCTTCAGTCACAGCGTGCTTTGCTAATCCAGGGGACAGAGTCTCTAAATAATGCGTCAAAAAGTATTGAGCGAAGCCAGCGGATTGCGGCAGAGACCGACCAGATTGGCACAGACATCATTGAGGAGCTCGGAGAGCAAAGAGAGCAGCTGGACCGCACCAGAGATAGATTGGTTAACACTGGAGAGAACCTGAGCCGGAGCAGGAAGATCCTGCGCGCAATGTCCAGACGGATCGTGACGAACAAACTGCTcctctccatcatcatcatcatggagGTGGCCATCTTAGGGGGTGTGGTGTACTTGAAGTTCTTTCGCAAGTAGGCAGTGAGATACACAAGACTCTCTCCCTTTTCTTCTTCCTGATTTTCATGAGTTTCTGACCTGGCAACAATGTGCTGGATGCTTTCGTGACTGTTAGTGTCACATGGACTTGTATGAGAGGTTATTTTTAGTGCTAAAC

Function

symbol description
vti1b Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; regulation of protein localization to plasma membrane; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0006896 Golgi to vacuole transport biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0012507 ER to Golgi transport vesicle membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1148 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; regulation of protein localization to plasma membrane; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B).

Ensembl:

ensembl_id ENSDARG00000039270

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012986 False 1804 mRNA 0.42 6 33040436 33054847
TCONS_00012987 True 798 mRNA 0.46 5 33041259 33054856

Neighbor

gene id symbol gene type direction distance location
XLOC_006743 rbm25a coding downstream 18064 33017561 ~ 33022372 (-)
XLOC_006742 rbm25a coding downstream 30702 32997020 ~ 33009734 (-)
XLOC_006741 NA coding downstream 43940 32946711 ~ 32996496 (-)
XLOC_006740 si:dkey-18j18.3 coding downstream 134130 32901358 ~ 32906306 (-)
XLOC_006739 rock2a coding downstream 141114 32815241 ~ 32899322 (-)
XLOC_006745 zfyve26 coding upstream 11749 33066605 ~ 33114934 (-)
XLOC_006746 plek2 coding upstream 68628 33123484 ~ 33134611 (-)
XLOC_006747 TC2N coding upstream 86423 33141279 ~ 33153889 (-)
XLOC_006748 fbln5 coding upstream 100572 33155428 ~ 33207424 (-)
XLOC_006749 golga5 coding upstream 156158 33211014 ~ 33227411 (-)
XLOC_006471 BX537274.2 misc downstream 22775531 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32214211 825904 ~ 826225 (-)
XLOC_006738 CU019663.1 non-coding downstream 232795 32793864 ~ 32807641 (-)
XLOC_006731 NA non-coding downstream 473180 32457931 ~ 32567256 (-)
XLOC_006732 NA non-coding downstream 545564 32492067 ~ 32494872 (-)
XLOC_006730 NA non-coding downstream 584443 32069898 ~ 32455993 (-)
XLOC_006752 NA non-coding upstream 206275 33261131 ~ 33301170 (-)
XLOC_006757 NA non-coding upstream 397582 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 402667 33457523 ~ 33459318 (-)
XLOC_006768 BX649403.1 non-coding upstream 1583773 34638629 ~ 34638746 (-)
XLOC_006769 BX649403.2 non-coding upstream 1589294 34644150 ~ 34644281 (-)

Expression


Co-expression Network