slc30a4 (slc30a4)


Basic Information

Item Value
gene id slc30a4
gene name slc30a4
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16514170 ~ 16522683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216896.1
AGTGCAGCAGATTTTGGGACGAGCGCGGAGTGGACACGCTAGCGTTAAACactgtctttttctctcacacacacacacactctctctcacacactccgaGATCCGCCTGAACACACACCGCGATGGACGGAACCAGCGAACGACAGAGTCTCGGAAGgtaACCTGGAGCGAGTGATGTTGTGCGGTCACTAGAGTTCCTCTCAGATGTCTGGCGCGGGGCTGATGGGTCGCGTGAGGTCGGCCTTCCGCCGGCGGACGGACAGCTGGCACCTGAGCGACACGGCGGCCTTCGACTTCTCCGACGATCTAGAAGACGACGAGGTGCCGAGGTTCAGTCAGCTGAAGGTGGTGGTGTCCGGAGAAACGGACGAGATTCCCACGGCTTCGCGCAACGGGGCCACGGTCAGCACTCTGCTGGCGGACGACGACGACTCGCTGCTGGGCTCCTCGTCCAGTCTGGGCAGCCCCGGCGCGGCCCCGGACCCCTGCGACGGATGCCGCAGGAGCAGAGAGCGCGACAAGCGCAGGAGCGTGATGAGGAAGCTGGGCGGCGCTGCTGTGCTCTACTTCCTGTTTATGGTGGGCGAGCTGATAGGGGGATACGTGGCTAACAGTCTGGCGATCATGACTGATGCTCTTCACATGCTGACGGACCTCATCGGGATCATCGTCTCGCTGCTGGCCCTCTGGCTCTCGGCCAAACCTCCCACCTACAGATTCACCTTCGGCCTCCACCggctcgaggtCCTCTCAGCTGGGATCAGTGTACTTCTGATCTATATTCTGACCGGAGTGCTGGTCAGTGAGGCCGTGCAGAGGACCGTTCATCAGGACTTCAACATCGACGGAGACGTGATGCTCATCACTGCCGCGTTGGGCGTCGCCGTCAACCTGCTgatggGCTTCCTCCTCAATCAGTCGGGTCACCTTCACTCACACGGCCACGCCCACTCTCACGGGTCAGCGGGGGGTCAGGGTCAGCAGGGTCATGGCAGTCTGGCGGTGCGAGCGGCCTTCATCCACGCTCTGGGGGATCTGGTTCAGAGCGTCGGGGTGCTCATCGCTGCCTACATCGTCAGGTTTAAGccgGAGTATAAGCTAGCTGATCCCATCTGTACGTACCTGTTCTCTATACTGGTTCTGTTCAGCACATTCCAGATCATCAGAGACACCGGCATCATTCTGCTGGAGGGTGTTCCTCGTCATGTGGACGTGTCTGGAATCCGAGCTGATCTTCTGAAGCTGCAGTATGTGGAGTGTGTGGAGGAGCTGAAGCTGTGGGCGCTGACGGCTGATAAAACTGCGGCCATCGTTCACCTACAGCTCACgccagggattgtgggtaaCTGGGAGGAAGTGCAGTCAAACGCACGGCGGCTGCTGACGACGTCACACGGAGTGACACACTGCACCGTACAGCTGCAGACGCACAGACAGGGGGCGCCACAGTCCTGCTCACACTGCCTCACACACAGTGCCTAAACACACCTGTCTCTCAccgtctctctcacacacacacactgagacacacacatacagacgcgcacacacacactgatacatacacactgagacacacacacacacacacacactcgtata

Function

symbol description
slc30a4 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in regulation of sequestering of zinc ion; response to zinc ion; and zinc ion transmembrane transport. Predicted to act upstream of or within zinc ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC30A4 (solute carrier family 30 member 4).

NR:

description
zinc transporter 4

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14691 SLC30A4, ZNT4; solute carrier family 30 (zinc transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216896.1 True 1602 mRNA 0.59 8 16514170 16522683

Neighbor

gene id symbol gene type direction distance location
mibp2 mibp2,LOC107713061,LOC107690135,LOC107710817,LOC107663471,LOC107595359,LOC107595360,LOC107097782,LOC107381735 coding upstream 9705 16501934 ~ 16504465 (+)
usp8 usp8,LOC107595392,LOC107715249,LOC107665382 coding upstream 62052 16442480 ~ 16452118 (+)
slc27a2a NA coding upstream 87996 16420194 ~ 16426174 (+)
zgc:158482 LOC107727401,LOC107703947,LOC107569985 coding upstream 95151 16411365 ~ 16419019 (+)
LOC122362844 fsd2,LOC107726333 coding upstream 145360 16362245 ~ 16368810 (+)
LOC122323202 nnt2,LOC108412674 coding downstream 13776 16536459 ~ 16550717 (+)
secisbp2l secisbp2l,LOC107573840,LOC107740797,LOC107713195,LOC106587693,LOC107698883 coding downstream 69906 16592589 ~ 16610126 (+)
fbn1 fbn1,LOC107713176,LOC107595388,LOC102779271 coding downstream 95487 16618170 ~ 16678066 (+)
myef2 myef2,LOC107698879,LOC107739991,LOC107568149 coding downstream 182898 16705581 ~ 16718158 (+)
larp6a larp6,LOC107712978,LOC107595350,LOC107739963,LOC107576037,LOC103354325 coding downstream 257999 16780682 ~ 16789673 (+)
G126723 NA non-coding upstream 19536 16453997 ~ 16494634 (+)
G126726 NA non-coding upstream 20617 16491533 ~ 16493553 (+)
G126755 NA non-coding upstream 50658 16462792 ~ 16463512 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding upstream 107546 16405455 ~ 16406624 (+)
LOC122362848 NA non-coding upstream 135504 16376438 ~ 16378666 (+)
G126766 fgf7,LOC107663468,LOC107663467,LOC107739939,LOC107574045,LOC107595354 non-coding downstream 30892 16553575 ~ 16559719 (+)
G126771 NA non-coding downstream 34036 16556719 ~ 16573530 (+)
G126786 NA non-coding downstream 88498 16611181 ~ 16611475 (+)
G126792 NA non-coding downstream 149853 16672536 ~ 16673306 (+)
G126813 slc24a5 non-coding downstream 196813 16719496 ~ 16720130 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 242903 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 458543 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 560517 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1466277 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1604013 14906616 ~ 14910157 (+)
G126820 NA other downstream 231026 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 551511 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 607239 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 781086 17303769 ~ 17309158 (+)
G127098 NA other downstream 888002 17410685 ~ 17411593 (+)

Expression


Co-expression Network