hcn4 (hcn4,LOC107658947,LOC107715829,LOC107553361,LOC107668476,LOC107594389)


Basic Information

Item Value
gene id hcn4
gene name hcn4,LOC107658947,LOC107715829,LOC107553361,LOC107668476,LOC107594389
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18393603 ~ 18460809 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264031.1
GCCGCCGCTCTCGCTTCTATGGCAACCCGACAGATCAGCATCACCATGAATATTCACGGGATCAGAGCGACTCGGGACGCGGCGGAAGGCGGTGATGTGGGCAACTCGATCGCGGGCGTTTGCTTGTGATTGACAGCCGACGGGGATCCTGAGGGTCCGTGACCTCCGCTCCGCGAATCTGCGATTCCTCAGACTTTATACGTGCTTCGCGGAGCAACACAGTCAGTGCCTTGAAGCTGGAGACCACTGGATCGGGCGAATTTGGGCAGCCAGGTAGCCTAATGCGCCGTGGCATGTGCTTGAGCGAAAGACAGGTGGGTTTGACCCTTCAGACTATTCGGGTTCTGGTGCACAGGGATTTGTGGCAATAATTACACCCGGACTGGATTCGTTTGTCATTGAATTGATCGCGCACCCGTTTCAATGTCATAATGGACAGGTTGCATTCGTCCATGCGTAAAAGGCTCTACAGTTTGCCACAGCACATCGGGCAGAAAGCGTCCATCATGGGTGATGCAGAAGACGCGGACAAGGACACCCGGAGGAAGAGCATCCGGATGAAGCCCCTGCCTTCGCCGACCTCCGCCGGAGCCCTCGGGGAGACCAGAAGCGGAGAGTCCGTGATCATGGAGACGGACATCGGGAGACCCGTGAAGACCAGCTCCAACGGGGACTGCCGGAGGTTCCGAGGCAGCCTTTCTTCCATCACCAGTCGGCACGTCCACGACTCGGATGTAGCGGAGGAAAGGCGCCTGATCGCGGAGGGAGAAGTCACTCCGAGCGAGGAGAGCCCTCCCGGAGCCGCTGGTGGCGGCGCGGAGCCCGGCGGCGGGGGAGAGGATGCCGCCGGTGCgagccagcagcagcagcagcagcaaccgGGCGTCCCGGATCAGCAGCCTGGCTTTATAAAGCTGGAGGGCATCGAGCAGATCCTTCCTGACGACGAGAGGTACTATCAAGCGGGCTTCATGCACAGGCAGTTCGGGGCGATGCTGCAGCCCGGGGTCAACAAGTTTTCCCTGAGGATGTTTGGGAGCGAGAAGGCGGTGGAACGGGAGCAAGAACGGGTCAAATCCGCCGGCTTCTGGATTATTCACCCCTACAGTGATTTCAGGTTTTACTGGGATCTCACCATGCTGCTCCTGATGGTGGGAAATCTCATCATCATTCCCGTGGGCATCACCTTCTTCAAGGACGAGCACACGCCACCGTGGATCGTCTTCAACGTGGTTTCCGACACCTTCTTCCTCATGGACCTGGTGCTGAACTTCCGCACAGGAATTGTGAAAGAAGACAACGCAGAGATCATTCTGGACCCTCAGCAGATCAAGATCAAATATCTGCGCTCATGGTTCGTGGTGGACTTCATCTCCTCCATCCCCGTGGACTACATCTTCCTCATTGTGGAGACGCGCATCGATTCGGATTTCTACAAGACGGCGCGAGCTCTGAGGATCGTACGCTTCACCAAGATCCTCAGTCTGCTGCGTCTGCTGCGGCTCTCCAGGCTCATACGCTACATTCATCAGTGGGAGGAGATTTTTCATATGACCTACGACCTGGCCAGCGCAATGGTGCGAATCGTCAACTTGATTGGAATGATGCTGCTGCTCTGTCACTGGGACGGATGCCTGCAGTTCCTGGTGCCCATGCTGCAGGATTTCCCCGCCGACTGCTGGGTGTCCAAGAACAAGATGGTGAACGACACGTGGGGTCAGCAGTATTCTTACGCTCTCTTCAAGGCCATGAGCCACATGCTGTGTATTGGATATGGCATGTACCCACCTGTCGGCATGACAGACGTGTGGCTGACCATCCTCAGCATGATCGTGGGTGCGACCTGCTATGCCATGTTTGTCGGCCACGCCACGGCGCTCATCCAGTCTCTGGACTCCTCGCGCAGGCAATATCAGGAGAAGTACAAACAGGTGGAGCAGTACATGTCCTTCCATAAGCTGCCGGCAGACATGAGACAGAGGATCCACGATTACTATGAGCACAGATACCAGGGGAAGATGTTTGATGAAGAGAGCATTCTGGGAGAACTGAATGAGCCACTGAGAGAGGAGATCATAAACTTCAACTGTCGGAAGCTGGTGGCGTCTATGCCACTGTTCGCCAACGCAGACCCGAATTTTGTGACGTCGATGCTCACTAAACTTCGCTTCGAGGTCTTCCAGCCTGGAGATTACATCATACGAGAAGGAACCATCGGCAAGAAGATGTACTTCATCCAGCACGGCGTGGTGAGCGTCCTGACCAAAGGAAACAAGGAGACCAAGCTGTCAGACGGCTCCTACTTTGGAGAGATTTGTCTGCTGACACGAGGCAGACGCACCGCCAGCGTCCGGGCCGACACATACTGCCGTCTGTACTCTCTGTCTGTGGACAACTTCAACGAGGTCCTGGAGGAGTATCCCATGATGAGGAGAGCCTTTGAGACCGTCGCTCTGGACCGTCTGGACCGCATCGGCAAGAAGAACTCCATTCTCCAGCACAAGGTCCAACATGACTTGAATTCAGGGGTTTTGAACTACCAGGAAAATGAGATCATCCAGCAGATCGTGCAGCACGATCGAGACATGGCTCACTGCGCCAACCTGATGCAGAGTCCGTCTCCACCCGCTCCTCCGTCCCCGACTCCCGTCATCTGGGCCCCCCTGATCCAAGCGCCCCTGCAAGCTGCTGCCGCCACCACATCGGTGGCTATTGCACTAACCCACCACCCCAACCTCCCCGCCACTCTCTTCCGACCCCCGGTGTCCGTTCTCGGAGCGAGAAACGAGCCGCCCAGCCGACTGAAGAGGTTTCAGACGCACGCACCGAAACCAGGAGACTCTCCATCCGGTTCGCCATCAAAGACTCGTCCGGGAGTCGACACACCGCTTCTCGCATCCCTTCGAACGCAGCACTCATCAGGAGCCACCGCTTCCAGCCAGCAAGCCGGGATTACGCCGTTTCCGTTCGGAAGCTTCTCTTCCTCGTCGGCGTCTCCGACTTCCAGCACCGCACAGCTCCATTCGCAGCCAAGGCAGAAGCGAGCCGGCACTCCTCCGCAAGCGGGAATTCCGACTGGGATCTTGGCTACGACCTCGTCGAACGCCAGCCCTCTTTCCGCAGGCTTCTTCAGTCACGCACCCAGTCAGCCGCTGCACGGCCAACCCCCGCCGAAACCTTCCCTGCAGCAGTTCGCTACCGGAGGGGGCAAGACTTCCACCGGGTCGAACCTCTACCGCACACCCCCGCCCGGATCCCCTGCCTCCAGCCGTTCCCAAGCCCCCGAGACTTCCACGTCATCCCAGGTTCCGCCCATTTTATCCACTTACCTACCTTTGGAAAGGTCAGCGCTGGCCTCGCTAGCTCAGTACGGCTCAGCGAATGCCTCGCCATGCTACACCCCTCTCGCCCCGAGTCCGACAGTCCAGAGCCCCGTCACGGGGAGAACTTTCCACTACAGTGACCCTTCCAGCGCCGCCGGCTCCCACTCCTCCCTGCTCCTCCCGCAGTCCTCCTGCCCCGGCCAGCTCCCGGGTCACCACTCATCCGGCACAGACTCTCCGCTGGGCCGCTTTTATGAGGATTTGAACATACTTTCCAGCTCCCATCCCGTGGAGGCAGCGGGTCAGTCTTCCCCTCGGGAGCCCGGTTACTGCCTCTCGCCGTATTCGTCCCCGACGCTCACCCCAAAACCCTGTAGCTCGGTATCAGGGCACATGGCCGGCCCGGTACAGACTTCACCGGGCTCTCGAGGCCGAGCTCGTTCTATAGGGACGTCACCTGCACTTTCTTTCCCGCACGCGACGGACGGACACCCGTCCGAACTAGAACCGCTCCGTTCGAAGCTCCCTTCCAATTTGTGAGGCTAAATCACACCCTCCTAACTCAGTACTAGCGATCTTCCTCCGTGTGGCATTTGACGTTTTCTTTCATTATCTCTGTATCGGCACTGTGTTTTAatcttaatcatttttaaatatctaaatattcctgtgatttaaaagaaatgaggtTAACTTAGAGCTTTagatttctctttcattttgcTTTGGTATCCTCCTTTTTCattcatgaatatatatatatatatatatatggaattatatatttaaatatatgttaatcaGTCTATAGGAGGGTGTGAAACGCTACATATATTGAGACTAAATAAGGacaatttagtttattttataccTATGCCAAATGCATCCGCAAGAGTTTGGTTATTAATACTGACGTGGACAGGAACCAGTGGACTCTTTTGCAGGAACCTATGCACTCACGCCTGCATATGACAACTAATTTTTGTCTGATCCAAAACACCTTTTTAGTCACCCTAATGAGGATCGCATATTGCCGATCTTGAATCTAAGGGGTTATTTAAGGGTTTGTTCATCCTGCAATGTGTTGGGACCCTTCCGAGGTGGAGAGGAGAACAtaggaaaaccaaaaaaatcccAATCAGCGTTCTCTTtagtatttctttcttttctttcagccaCACTGTAGTAATATCAGCGGGCATTGAGTGGGCGTCAGGCGAGAGTTGAAGAAACGTCCCAACTAAATCACAATTCACTTGTGTCTTCCAGGATCATACGACAGTGTAGCCCTGCagactgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgttacgtcTTGATGCAAGTGGCAATCAAGTTAGACTTACCAAGAATAGATTTGCCTTGTCACAGCAGAGAAGAAACGGAAAACCTCCCTGCAACATTTCTTGTTTGTACATAAAATAAGCCAACAACATTAGTCAAAAAGCTGCTCAAAGgtgatttagtttgtttttttctatatcTTTAGCTGCTAATCGATTAGGTGGAATGGAGGGAAGGATTCTGAATGTACCGTGTGAGTCCAAACTATGACGAACAAATCCGTTCAGGGCTGGTGATTGAAGATCTCAGCAGACCTCTGTCGCACACACCTGGGTCCCTCACAGGTCACGACTCTCAGCCACAGCTGTCTGATTTAAAAGGACAGACGGGCACATTTGGGCGACCTTTGACCCTTGTCAGCTTGAGATCAGGACAACACGATGACCAGCGTCAGACAGACAGGCTGGAATTGTAATGATGCACAAAACatgattcattttaagaaaatgaaaatgaacacacATTATTGTTTAAACGTTTGCAATCAGcaggatttttacattttttcaaagaagtctcttctgctcatcgaggctgcatttatttgataaaaaatacagtgcaaacggtgatattgtgaaatattaatacagtttaagatattgtttttattttcataagcCATTATGATTTTTCATAagctattactccagtctttagtatcacgattcttcaaaaatcatttttatattctaatattttttttttggaacctgTGATACTTTTTACAGAATTCTTAGCtgaataaaaagttacaaatcttttgtaacaatataaaaatctttattactTTAGATcaattctttgattaataaaatgcattcatttctttaaaaaaaaaaacgaaagatCTTACTAATCCCAAACTTTTTGATTATAGCGTAACACAATATATGgtatatttttaatgactgaTCAGTAAATGGATAATTgacaagaaattattttttttcaaatgtctaGAAATGtcaatgtctgtttttatttctaacaTTCAGAAAGTCAAAATgtctacatttatatatttagtttatttatactatatatagagagagagagatagaaataATCGTTTTCCTCTCTATATAAAAGTCACTATTATTTCTAAAGGCCTGTTTGAGATTTTTCCCCTGTTCTTTCTCACCCTCAGTGTGTCGCGAAGTGAACTACAGCATTTATACACACCTGAGAGCGTCTGACCTGAAGAAAGTTCATAAGTTGTGAAAACTCCTCAACTTTTGTGAAGTGAGCGAGACGGGGGGAGAAAGGGAGACGGGAAGCACAAATGCAACGAGACACTGATGTATTGAGGAGGTGATGTGTGCTGACTGGCAGCCAGGGGCCCGGCAGGTAGGCAGGACCCCCGCGGGCCCCTCACCGTGATGAGAGGTTTGTTCGGGGAGCCTCCGCGTGtcttctgattgtttctcaGGGCTCTTAGAAGTTTCCAGAGGGGGTAGAATATTGATTGGGGAGCATttgagaaatttttttttgtgacagttacataaataaataaaaacacaaagggaACCGGAGGGAGCTGAACCTGTGCCGGCTGATGGGAAGCAGAAAGAGAAGGAATCAAGGCGAACGAGTGACTGATTAGAGAAGTGTAGCGCGAAATCCAGAGCAAAGCCATCAAACACGATACTGTCACTCCACTGAATCAGAGCCTCTTCCTGACAATCAGAATCCCAGAATCATTGGTTTTAAATGCTACTAAAATCTCTCTAGAAGATGCAAAAGCATGCATAGAAAAGAGTCTTGTCTTATCTGCTTTGAGCAACTGATGATCACTTGGTGGTGACTGCTGTTATTCATGGAACACGAGCAGAGCATTTGTGTCAGTCACTACCATTCAACTCTTAacgctcatcaaggctgcatttaattgatcaaaaatacagtaaaaacgtgAAATATTATTCGAATTTCAACTGAGTGCGTTCTTTGTGaatatgttgtaaaatgttatttattcctgtgatcaaagcagaattttcaacgtcacacgattcttcagaaatcattgctGATCTGCTCAAGAAACCGCGTCGAAATCAGTTGTGCCGCTTCATGGGTTCGTAGAAACCTTTTCAGGATCTGTGATGAAcaggaagttcaaaagagcaggatttatttgaaacaggAATCCTTTGtaacgttataaatgtctttactctcacttttgatcagttgaaCGCATCCTTGATGAATTTCAAAAAACTCGCTCACCCATACAGACAAATCAAACTGGCACGATTGAATGACGTGTTTTATGTTCTGCTTGTGTTTCACATATAAGGCCTATAGATGTTCTATAATCCATTATAATCCATTCTTTCTATCACAACTGACCACTTTCCCATGAATCTCTTTGTCCTAAAGCAACATGGGAAACTCTTTTATTGAGCGTCAAACATGTATGATTCCCTGCCGTTGCTTTCTGTGCGATTCAGGGACATATTTACAGACGCAGCAGGAAGTCGAATCTGGACATGATCCACCTGGCACCAAGCAACGCTTCGGTTTGTCTGCCAGTTTTTATAACACAATTCTAATTCCATTTGGGAGCGTTCCCAATTCTGACAGCTAATCTTACGCCGGCTCCGTTTGCTTTGTGCCGTGAAGGAGCCCCCGCGAAACGGCTCTGCAAGACGGTAATAAAATCAATGGCAGTGATTGAGGATTAGATTTCACACTTACCAAGACGCGTGGAGAAAAGGATGCGGTGCTTTGACTGGCACCATCATCTCTAATTCATGCCTACAGATGTGTTCTGGGAGTCTCTGCGGTGGGACGTGTGTCAAACAGGCAGCGTTCAAACTCACACGGGTCACGGGGGTTCATGACCCGGACAGAACCAGAGAGCGGTACATTACCGTTATGTACCTGACAGGGAATCACGGAATAGTTGACGTGAGAACCAGCCTCACGCAAGACTTTGATTCTTggtcagatttggagaaacgtagcaCTGCATCGTTTGTTCACCgacggatcctctgcagtgaatgggtgccgtcagaaccaGAGTCTAAAAGGCAAAAGATGCATGTCAGAAACAAATCTATAAAAGGTTTTTAACCTAAAACCATTGAGTCCGTAGTCCATGCTTCCTCATGTGAATCAGGAAAGAAATAAGTAGATATCAAGTACTGTTTATAAGCCGAAACGGCTGGGAACAAATATGTGGGCTGATTTTGATGCAAGAGAAAGAACAGGATATGgattttttcactggaggaagcatattatggatttttgtatGTAGCTATAAAATCAAAACGAACGTTCTTTtttacaaacacgcagcttttgtCTTGACAGAATGTTAACTGAtagactggagtgctgtggattatccagatgtttttaacagctgtttggactctcattctgacggcacccattcactgcagaggatctaccGGTGAGCAAGTAATGCAACATTTCTCTAAAACCCATCCATCTGGCTTGGCCTGAGGGTGGGTAAATTGTGAGCAGAAAAAAGCGTTTTTGGGTGCACCATTCCTTTCAGCGGCAGTGTTGTTGGTTTCTCTAGATCAAATGTAGCCAATTTTTACAGGGTGACAAACTCTGTCTGGACGGTGGAATGAAGTTCAACTGTTACATTTAGAATTGAAATGCTTCATTTTGAGGCAGACATGCCTGGCTGAAGGAcacgtgttttattttttgtttcgttttttaaGAGGGCTCAGTTAGTATTTTTTCCACAGCACTGTTTGAACCCACCTCACTGTGTGTTTATAAAACGatgatattatttattcctCTGCGTTTCTTTTGGCGTTCCTGACATGGTTTGTGACATTCACCAAATCATTTGATGTTTCTTCCTCTGATCTCTGGTTATTCCATTTGACAGCGTCATGTTAATGCACCGGAAATTTCACCAAGTCACTGAAATACACTTTAGCACTTTCTTCAGGACAATAATGAAGACACAACGCTTGAACTGAGAGACCGATCGGATCAATCAGAGAATGTCAATCTATTGAtcagttttttggggtttttgttCCTATGAAATCTATAAACCTGGGGAAACAGCAATAAGCGTGATGTGAGCGTCAGACGTGTTGGGGATGACTCTGTTCACCTGCGGTTCAGGACCAATCAGAACCTGGATGGACAATAAGCACACGAACTGGATATTATtaagaaaaga

Function

symbol description
hcn4 Predicted to enable sodium channel activity and voltage-gated potassium channel activity. Acts upstream of or within heart contraction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in heart primordium and pericardial region. Used to study sick sinus syndrome. Human ortholog(s) of this gene implicated in Brugada syndrome 8; Gilles de la Tourette syndrome; and sick sinus syndrome. Orthologous to human HCN4 (hyperpolarization activated cyclic nucleotide gated potassium channel 4).

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like

GO: NA

KEGG:

id description
K04957 HCN4; hyperpolarization activated cyclic nucleotide-gated potassium channel 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264031.1 True 8888 mRNA 0.48 8 18393603 18460809

Neighbor

gene id symbol gene type direction distance location
LOC122362573 LOC107668478,LOC107715830,LOC107658962,LOC107594373,LOC107553363 coding upstream 6673 18339199 ~ 18386930 (+)
ugt5f1 LOC107709391 coding upstream 49746 18339143 ~ 18343857 (+)
pepd pepd coding upstream 59121 18277364 ~ 18334482 (+)
LOC122362666 LOC107712581,LOC107668485,LOC107734866,LOC107659171 coding upstream 323022 17983478 ~ 18070581 (+)
LOC122362789 kiaa0355,LOC107594396,LOC107734949,LOC107668468,LOC107600920,LOC107712582 coding upstream 424142 17937030 ~ 17969461 (+)
aqp11 LOC107659225,LOC107715828,LOC107594401 coding downstream 59182 18519991 ~ 18523564 (+)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309,LOC107600345 coding downstream 83554 18544363 ~ 18546307 (+)
LOC122323077 LOC107600293,LOC107660691,LOC107735981,LOC107658864,LOC107594385 coding downstream 193809 18654618 ~ 18658740 (+)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107735288,LOC107600237 coding downstream 919226 19380035 ~ 19388663 (+)
LOC122323148 LOC107735994,LOC107660689,LOC107755676,LOC107687769,LOC107600770,LOC107572113,LOC107570700 coding downstream 943512 19404321 ~ 19451211 (+)
G127413 NA non-coding upstream 41500 18351740 ~ 18352103 (+)
G127268 NA non-coding upstream 412262 17977675 ~ 17981341 (+)
G127263 NA non-coding upstream 419101 17972550 ~ 17974502 (+)
G127243 nedd4,LOC107735005,LOC107712575,LOC107659054 non-coding upstream 535454 17857012 ~ 17858149 (+)
G127242 NA non-coding upstream 537792 17854650 ~ 17855811 (+)
G127431 NA non-coding downstream 25048 18485857 ~ 18487271 (+)
G127434 NA non-coding downstream 31188 18491997 ~ 18518461 (+)
G127439 NA non-coding downstream 41632 18502441 ~ 18546723 (+)
G127443 clns1a,LOC107594388,LOC107579082 non-coding downstream 66320 18527129 ~ 18528342 (+)
G127460 NA non-coding downstream 113010 18573819 ~ 18574354 (+)
G127292 NA other upstream 253350 18138535 ~ 18140253 (+)
G127258 NA other upstream 465438 17922928 ~ 17928165 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other upstream 506392 17883618 ~ 17887211 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other upstream 579181 17808601 ~ 17814422 (+)
serp1 NA other upstream 937946 17454154 ~ 17455657 (+)
G127456 rps3 other downstream 99154 18559963 ~ 18563152 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other downstream 185553 18646362 ~ 18652164 (+)
G127500 NA other downstream 269881 18730690 ~ 18841535 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other downstream 808802 19269611 ~ 19288556 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other downstream 1542195 20003004 ~ 20015706 (+)

Expression


Co-expression Network