scamp5b (scamp5b,LOC107740350,LOC107722282,LOC107599784,LOC108430449)


Basic Information

Item Value
gene id scamp5b
gene name scamp5b,LOC107740350,LOC107722282,LOC107599784,LOC108430449
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 15511535 ~ 15518917 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264241.1
AAGCGCGAGGAATGCAAAGTCAATGAAGATTACGAGAAACTTTAGCAACGTTTGGAAGAAACGAGCGACTCTGCTTCCGCTAGTTTGTGCGCGTGTTTGATTTGGCGTTGAAGCACGCGCTAGAAGTCATGTTAGTGTAGGGCTCTCGGTGTGCAGAAGATTCACAGCTCTTGAGAACAAGCAGCCAACACTAATTACCCAATGGCTGAGAACAACTTTCCTCCTCTGCCTGGCTTTATTCCTCTGAAGCCATGCTTCTACCAGGACTTTGAGGAGATTCCTGACCAGCACCGGACCATGTGCAAGAGACTCTATCACCTGTGGATGCTGTATGGAGTGACTCTGCTGGTGAATTTCTTCGGCTGTATGGCGTGGATGTTTGGAGGGGGAGGAGTCACTAACTTCGGCATGTCCATGATCTGGGTCATTCTCTTCACGCCCTGCTCTTATGTGTGCTGGTTCAGACCCATCTACAACGCTTTCAAgacCGACAGCTCTTTCTACTTCATGGCGTTCTTCTTCGTCTTCATGGCACAGCTGTTCATCGCCATCATTCAGGCCATTGGGATTCCAGGATGGGGCGTTTGCGGCTGGCTGGGCACCATCTCTTTCTTCGGCACGAGTATCTTCGCCTCCATCATCATGTTAATCCCCACGCTCATGTTCACCGCTGTCGCTGCCATCTCGTTCGTGGCTCTCACGAAGgTTCATAACTTCTACCGCGGCAGCGGAGGCAGCGTGAGTAAAGCGCAGGAGGAGTGGGTCTCCGGGGCCTGGAAGAACCCTCACGTCCAGCAGGCGGCTCTCAGCGCAGCCACCGGAGCCATGCAGGGACCCCCGGGGCCCCAGTCACCGTCCTACTCCACTCCCAACTACGACAACGCCGTCTGAAACACAGCCAGACCGCGCCAGAGCAACCAAGCAAGCGATGCTTGggatttttaatgtcttttaaatgtttgtgttcttGTTTTGCTGATATTTTGGCCTATTTGCTCCCAGCTAAGTAAATATGTTCTGAGAACGTTTTTCTAACGTTATGAAAACATTCcagtttttaataaagcaatggTTTGCAGTGAGTTTCTAACAGGAAAGGGGAGGAACAGCAAACCTTCATGGggctttttgcttttataaaatattctatatactgtgtgtagcaaggtttcagaaaataaaacaaagcgaataaaatgtaatgattttaataaaaaagattattctACCGCCAAAACAGTTCTTCAGAATCGATTGTGGTTGCCGAACGACACACAGACGCAAAcaaaggtgtgtgtttgttatttaCAAACAGCTTCGAACGcagctcaaccaatcagaatcaggGACCGGAActcttttgaatgtttaattgtATCGTTTTCCGAACATTCCACGAACgttacatttcagtgttttctgaaCATTCTGAaacaataatcaaaaaataGACAAACAGCAAACCAAAATGCTTCATGAATTAAACATTCTAatgaataatgtataaataacgTTTGTGTGCTAATGTTACGAGAACGCTAGTTAAGACCAGATGCCAGATTTGAATGAACACTGTATTAATGTTACTGGAAGAATGTTTCTTCATAACTTTCAGAGAATCTCACCACAACGTTTAGTCAACGTTCTGAGAACATTTCCTGCTAGCTGGGGGGCTCATATGTgactttattaaattacatgagTTCATGTGCATTTCAATTTGTAATCAGGCTTCCCGCGGTCATGGAAAAGTTGGCAATATCAGGGAAATTTAAACACATCAAagtttgttctttaaaaatatcagtccagctaaaaaaatgtctgtgaaatgatatttaaaaagataaaaaaaattatcttttatttacaaatgaccAAAATGTCTATGCATTTTTGTCttggatatatatttttctagttattctagttattgtttttaatgatttgatcTTCTAGAAACTGCTCAAGTGAGTGCAGtctaaatatcaaatattatagCATTCATAAACAATTATACAGTTACTGTATAGAGTGGGTGTTCacgtgttttgtgtgtgtgtgttagctgtTCATTTACACGACTACAGCATTTCAGAAgcctaaaaaacaaacacaaaatgtgcAAATGCACCGTTCACGGATTTCTGAAAAGAGTTACAGTATGCAACCGTAATACAGTAGATGTTTATGTGGGTATCGTTTTTGATAACCTAGTTAAAAGATAAACTTTTCAAGAAGGATAAATGTGTCTCTTTTTAGTGCATcgctgttgttttatttgagaTATGTACGTGCTGAAGTGTGTAGCATGAAGGGCGTCGTTGTTTTGTCTCATACACGCATGTTGGAAAACCCAGATGAAGCTGTCCTGTTTGAAACACACTGATAATTTTGCGACTGTATGTGAAAAAAAGGGAATTAACTCCAGCTTTCCTTTGATTTTCAATGTGATACGAAGCAAACTgatcatttgaatttaaataaatcgcCAACATCtatttgttcgtttgtttttaatgccatGGAAGCTTCTGTGGCTACCTTTGTGGCCAAGAACAATCATTTTAGGTGTATTTTAGGCTATGAACTCAAACCATGTCTGGTTTAAACGTTGCTAAAAATACAACACGCTGCATGGATAGAGCGTTCGTACAGTAAGACACACTAGTAAGTTTGCATTCGGGCTTCGTCCAGCAGGGCGCAGTCTTGTTCTGTGAGAGATTTCCATGCCATTATCCTTCCTGGGATTCCCCAGACACACATCACCCAACAGCCCCGACTCGCAGATCGCAAATGGACAACAACGCCACTTAGTCAGGCTAATAACTTGATTCTCGCTTAGATGCAAATTTAAGCAGGCCGTCTTTTGGGTGCGGACATCCGTCGAGCATGTGTTAGATTAGATAGCTGGAGACAATGAATGGATTTGTCTCACGCTCCCTTTCTTTTCTCGTCGTTTGTATCTCCCTGCGCAGAGCGATGATGGAATCGTTCGCATTAGAGCTTGACGCTCAGAGCATCCCTGAAGACGGCGGCGCTACCCACCGCCATAAAACATCAGCCACGTCCTCTGCATTAGCACGGAGAGACACGCTTTGCACTAAGACAGAGGCCCTGCAATAA

Function

symbol description
scamp5b Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SCAMP5 (secretory carrier membrane protein 5).

NR:

description
PREDICTED: secretory carrier-associated membrane protein 5-like

GO:

id name namespace
GO:0045956 positive regulation of calcium ion-dependent exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264241.1 True 3126 mRNA 0.43 7 15511535 15518917

Neighbor

gene id symbol gene type direction distance location
mob2b mob2,mob2b,LOC107722284,LOC107656971,LOC108430083,LOC108264656 coding upstream 28838 15449341 ~ 15482697 (+)
dusp8b LOC107713871,LOC107692476,LOC107569904,LOC107599770 coding upstream 69404 15432956 ~ 15442131 (+)
yif1b yif1b,LOC107566288,LOC107564401 coding upstream 439312 15066862 ~ 15072223 (+)
si:ch211-136a13.1 LOC107727474,LOC107566284,LOC107692514,LOC107722278,LOC108264834,LOC108435511,LOC106580732 coding upstream 446697 15052044 ~ 15064838 (+)
shkbp1 shkbp1,LOC107692479,LOC107724139,LOC107656962 coding upstream 590512 14911044 ~ 14921023 (+)
insyn1 LOC107692472,LOC107740352,LOC107656969,LOC107722291,LOC107581104 coding downstream 94486 15613403 ~ 15670157 (+)
ubl7b LOC107668695,LOC107579017 coding downstream 291754 15810671 ~ 15814853 (+)
zgc:158464 LOC107572397,LOC107740353,LOC107692470,LOC107599765,LOC107711356 coding downstream 436988 15955905 ~ 16038911 (+)
LOC122362746 cngb1a,LOC107670565,LOC107679572 coding downstream 545050 16063967 ~ 16075424 (+)
LOC122362951 cngb1a coding downstream 556554 16075471 ~ 16085414 (+)
G126458 NA non-coding upstream 444958 15066346 ~ 15066577 (+)
G126347 NA non-coding upstream 526787 14932321 ~ 14984748 (+)
G126345 ltbp4,LOC107724163,LOC107566282,LOC107692515 non-coding upstream 573901 14936925 ~ 14937634 (+)
LOC122323060 NA non-coding upstream 768091 14740786 ~ 14743444 (+)
G126285 NA non-coding upstream 1040520 14470760 ~ 14471015 (+)
G126591 NA non-coding downstream 242046 15760963 ~ 15820330 (+)
G126605 NA non-coding downstream 306510 15825427 ~ 15828353 (+)
G126626 NA non-coding downstream 480535 15999452 ~ 16003818 (+)
LOC122362955 NA non-coding downstream 539617 16058534 ~ 16058974 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding downstream 689667 16208584 ~ 16211583 (+)
LOC122362588 NA other upstream 463642 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 601378 14906616 ~ 14910157 (+)
gemin7 NA other upstream 683243 14826788 ~ 14828292 (+)
G126146 gramd1bb other upstream 1570166 13940095 ~ 13941369 (+)
G126175 NA other upstream 1598735 13909564 ~ 13912800 (+)
LOC122362954 LOC107740354 other downstream 432065 15950982 ~ 15953653 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other downstream 528152 16047069 ~ 16055627 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other downstream 744922 16263839 ~ 16271267 (+)
G126820 NA other downstream 1234792 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 1555277 17074194 ~ 17077159 (+)

Expression


Co-expression Network