hsf4 (hsf4,LOC107596914,LOC107715602,LOC107660759,LOC107690412,LOC107583721)


Basic Information

Item Value
gene id hsf4
gene name hsf4,LOC107596914,LOC107715602,LOC107660759,LOC107690412,LOC107583721
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 3372086 ~ 3380670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264253.1
agacagagagaggaggagaaggagagaagaACAGCATCCGCAACGCACATCCCAAGAGAGCATCAATTTGGAAATGGACTGAAATACTACTGGATTAAAGACTCATCTGTTCAAGTCCAAGTGTAGTCATGCAGGAGAACCCAGGCTCTATAGGTGTGGATGGAGGATACGCCAGCAATGTACCTGCTTTCCTCACTAAACTCTGGACTCTTGTGGAGGACCCAGAGACCAATCATCTGATTTGCTGGAGTACTACGGGCACCAGTTTCCATGTTTTTGACCAGGGCAGATTTGCCAAAGAGGTTCTGCCAAAATACTTCAAACACAATAACATGGCAAGCTTTGTACGCCAGCTCAACATGTACGGTTTCAGGAAGGTGGTGAATATCGAGCAGAGTGGGCTGGTGAAGCCCGAGCGAGATGACACCGAGTTCCAGCACCTCTATTTCCTCCAGGGCCATGAGCATCTGCTTGAACACATTAAGCGCAAGGTGTCAATAGTGAAGAGCGAGGAGACCAAAGTGCGACAGGAAGACTTGAGTAAGCTGTTGTATGAGGTTCAGGTGCTGCGCAGCCAACAAGAGAACATGGAAATGCAGATGCAGGATATGAAACAGCAAAATGATGTTTTGTGGAGGGAGGTGGTGTCACTGAGGCAGAatcacacacagcagcagaaagTCATGAACAAGCTGATTCAGTTCCTGTTTAGCCAGATGCAGTCCAACACTCCCAGCACTGTGGGAATGAAGAGAAAGCTTCCTCTCATGCTGGATGATGGCTGCTCCACCCCTCCTGCCTCAAAATTCAGCCATAGCCACTCCGCAGAGTCCTTGCAAGAATCTTTCTATATCCAGTCGCCATCCGCAGAAAGTGCATCCTGCTCCACTAGCAATGTGATGACAGGAGGGCCAATAATCTCTGATGTCACTGAAATCTCACAGTCCAGCACCATGGCTTTACAAATGCAGGCAGAGGAATCTAGAGAAAAGTGTCTGATGCTGATTAAGGAAGAGCCAGTGAGTCCTGGGGTCCAGGGACGGGGAGAGGGTGTACCACTCGGCTCCTGTGAAGTGTGCACTGAACCCCCCGTCCTCCCTGTTGCCATGGTACAGTCCGTCCTAGAGGGCCGAGGATCTAATTTGGGAGAGAGAAGGGTCAAAAGACCCATGTTAGAAAGATCAGAGATTCCTGACGGTGTGGAGAATGTTGACATGAGCCTGGAGGATTTACAGCTGCTTCTGAGGAGCCACCAGCAGAGCATGGAAACCAGTGCTGCAGCAATGGATCCCTTTACATTTAGTCTGTCTTTGAATGAGTGGAACTTCACAGAAATGGACCCGACCCTGAAATCGGAGCTGGCTAATGCCCTCATCCCTGCTGCTGTGTCCCAGTACATGTTTCAGGGTCAGGAGGGGGAGACATACCCCACCGCTGGCTATGAGGAGCAGTGAGGCCCTGATACAACAGCCAGCACAGATCCTTCCTGAGAGCGAACAGAGTAATCCATTTGAAAGCTTGCCACTTGGATTGTGCATTATCCCAACATCAGAAGACAAGGCTCAAATTTATGACTTGCAAATGTGGAGGTTATAAACCATATCAAGTAAACATGCTGACCAGCCCTTTGTGAAGATTCATTTAGTTGGCCACTGGTGGAAggtgcatttttacaaaaacactggGAGCGGTTCAACTCTTTGGAGATGGAATATTTAAAGTAATCCTTTCTCAAAGCCTACAAGGAGTTCAGGCTACATCAAGATCattttgaagatatttttcTCATGATATAATGCATCCTAAGGAAACTTCTATTGCCAAGGAAAAGGCAATATTAAGCATTTCCCTCACAAACGACTACAATGGAGGTGAACTGTATGCAATACGACGTAAATCACTGTGGCCCGAGTTTGAATGCACTTTAGTCTGTGTGTTGGAGTTTCTGCTTTCTGGAGCTGTGATTTAATTTTCCCTAAAATGTAACtgtaagaaattaatatatttagttcAAATTGATATCATAGTGAAGCACACACTTgtattgcaatatatatttgaagATATACAAAAAGTACTGGTTTAAtcatattatgtatgtattaatgTGAGAGGTCTAGGGGTTAAAAATCAGACCTCGCAGAACTGAAACGATGATGCACTGCTTTTTGCACACTTTAGTGTCTTTTTCTCAATCATATTTTAGTatctgaaatatattattaagacATCAAGTATCTTTGTTTCAATTTATCCTTTAGTTGATGGACTAGCCTTTCAGAATTTACAGCTGTCTTTGATACGCTTGATATATTGTGTGATATTTGATACAAATGTGTTGACCACAATGGTTAGTTGCAAAAGACAGAATCAATGATTCTTAATGCCTTTTTAGAAGAGCGCTATACTTAGATAAAACGTAgcttctatattttaaatatttatgcaatgtATTCTAATTTGAGTATTTCAGCCCATCAGCAAAAATAAAGACCAACAATGGCAGTGCCTTAGGCTTTAGGTAagcatctgtttatttttcctgCCAAACCTCATATATGTAATGAGGGCAAAGGAACACACAACATACAATAACATTTTAGAGGCCATAATGCACTTTTTTCATTAGGGCAGCCATGTAGCAATACAGAAAACCCTAGATCTCTTACAAATGTGTTGAATTTTAAGTGCAAtactgctgcatttatttaaatgatttcccTAAAAAGGAATTTAGCTGCATTGATTTGTATGATTTCTCAAGGATGCAACATCTAATGATGATTTAGATGGGAACTATGatggaatttaaaaaagaaagaaattgcaCTAAGGGTGATAACTGTATTAGAAATAGTGTTTATTCCGTGTtagtttatacttttatttttccactACTCTCTACCAAAGAGCAATaattaaatggtttattttggGTGCTTTTTCACATAGCTTGCAAGTCTTTTATTGTATAgcctatttttcttttataatgtaattaattgcactgctaaaaaaaaaatgaatgtagaTAAACACAGCGAGACAAAAGCAAGAAAGGAAACCAATGTTTCATATTATTTCTGGATGTAGTCTGTTCCTGACTCCCACCAGCATGTCAAaaatatgtacacaaaaaaaaaaactgtaaaacaataaacttat

Function

symbol description
hsf4 Enables sequence-specific DNA binding activity. Involved in maintenance of lens transparency. Acts upstream of or within lens development in camera-type eye; positive regulation of deoxyribonuclease activity; and regulation of lens fiber cell differentiation. Predicted to be active in nucleus. Is expressed in eye; lens; and solid lens vesicle. Used to study cataract. Human ortholog(s) of this gene implicated in cataract and cataract 5 multiple types. Orthologous to human HSF4 (heat shock transcription factor 4).

NR:

description
PREDICTED: heat shock factor protein 1-like

GO: NA

KEGG:

id description
K09417 HSF4; heat shock transcription factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264253.1 True 3165 mRNA 0.41 13 3372086 3380670

Neighbor

gene id symbol gene type direction distance location
nr2f2 nr2f2,LOC107549018,LOC107690378,LOC107601645,LOC107715214 coding upstream 518913 2846043 ~ 2853173 (+)
st8sia2 st8sia2,LOC107693033,LOC107715201,LOC107690408,LOC107549020 coding upstream 972077 2389088 ~ 2400009 (+)
slco3a1a slco3a1,LOC107693030,LOC107601651,LOC107690372 coding upstream 979119 2340370 ~ 2392967 (+)
zgc:162879 zgc:162879,LOC107556259,LOC107691119,LOC107715222,LOC107690369 coding upstream 1204795 2159316 ~ 2167291 (+)
sema4ba sema4ba,LOC107714785,LOC107556264,LOC107691120,LOC107715225,LOC107551463,LOC107690368 coding upstream 1216583 2095553 ~ 2155503 (+)
nudt21 nudt21,LOC107660760,LOC107690386,LOC107721012 coding downstream 352 3381022 ~ 3383654 (+)
LOC122362457 NA coding downstream 3126 3383796 ~ 3386206 (+)
LOC122362595 NA coding downstream 9258 3389928 ~ 3391792 (+)
pard6a pard6a,LOC107733556,LOC107726251,LOC107596921,LOC107694933,LOC107692936,LOC107583728 coding downstream 245877 3626547 ~ 3652067 (+)
tsnaxip1 LOC107694935,LOC107733566,LOC107726416,LOC107596986,LOC107733564,LOC107583847 coding downstream 299371 3680041 ~ 3686005 (+)
G124017 NA non-coding upstream 75099 3289896 ~ 3296987 (+)
G124008 NA non-coding upstream 93044 3210582 ~ 3279042 (+)
G124012 NA non-coding upstream 133307 3235345 ~ 3238779 (+)
G123974 NA non-coding upstream 175963 3159424 ~ 3196123 (+)
LOC122322899 NA non-coding upstream 459843 2880016 ~ 2912243 (+)
G124029 NA non-coding downstream 19863 3400533 ~ 3400782 (+)
G124046 NA non-coding downstream 83241 3463911 ~ 3488916 (+)
G124092 NA non-coding downstream 242204 3622874 ~ 3623153 (+)
G124121 necab2,LOC107583851,LOC107672281,LOC107596932,LOC106560819 non-coding downstream 488998 3869668 ~ 3893386 (+)
G124097 NA non-coding downstream 728060 4108730 ~ 4109140 (+)
chd2 chd2,LOC107690375,LOC107715217,LOC107693036,LOC107715589 other upstream 910296 2410733 ~ 2461790 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other upstream 1052946 2301758 ~ 2319140 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other upstream 1131826 2207199 ~ 2240260 (+)
G123664 NA other upstream 1369796 2001786 ~ 2002290 (+)
G123568 NA other upstream 1800155 1565426 ~ 1571931 (+)
tmem170a tmem170a,LOC107596918,LOC107583727 other downstream 131287 3511957 ~ 3554690 (+)
nrn1la LOC107726468,LOC107694939,LOC107583849,LOC107596927,LOC107733575,LOC107672183 other downstream 339218 3719888 ~ 3743756 (+)
LOC122322928 megf11,LOC107596974,LOC107686294,LOC107672222 other downstream 1378958 4759628 ~ 4795836 (+)
G124548 NA other downstream 1690975 5071645 ~ 5110633 (+)
G124553 NA other downstream 1758820 5139490 ~ 5140671 (+)

Expression


Co-expression Network