usp8 (usp8,LOC107595392,LOC107715249,LOC107665382)


Basic Information

Item Value
gene id usp8
gene name usp8,LOC107595392,LOC107715249,LOC107665382
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16442480 ~ 16452118 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264278.1
GGGTTTGAATCCGCGCACTTCCGCGTTTGATCGAGCAGTTTGAGGTGTTTACTGTCATCGGTGCGAATAAACTTGACTTTTCTTCGCTGACCTGCTGCTTCCAGCGAGTTTTCTGACAGGATTTGAGTTCACGCTGTGTTCAGGGAATATGAGCTGAAAATGCCGTCCGTGTCCACCGGAGTGAAGGATCTGTATCTGTCCACATCACTGGGCGATCTGAACAAGAAAGCAGAAATCAAGCCGGATAAAACCAGCACCAGACACTATGTCCAGAGCGCCTGTAAGATCTTCAAAGCGGCTGAGGAGTGTCGTCTGGACCGCGATGAGGAGAAAGCGTATGTCCTCTACATGAAGTACCTGACCGTCTATGACCTCATCAAGAAGAGACCGGACTTCAAGCAGCAGCAGGATTTCTTCCTGTCTATGCTCGGACCGACCAGCTTTAAAAAGGCCATTGAGGAGGCAGAGAAGCTTTCAGAGAGTTTGAAGCTCCGGTATGAGGAAGTAGAAGTGCGCAAACAgctggaagagaaagagagaaaggaggagagGAGTCGGCGAGAAGAAAGAATTGAAAAAGATGGCCGTGCTTCCCTGAGAGGAGCTTCAGAGAAGAAGGACAGTAAGAAGCAGGTTAAAGAGGAGCCCAATAACAGCGGATGTGATAAAGGAAGCATCAGCGCTAAGGATCTGTTCCAGCTGATGAAGGATCCCAGTATAAGTGTGCTGGTGATGGATGCACGGAGCAGGCAGGACTTCGAGGAGTCTCAGATGTGTGTCCCGTCTCAGACGTGTATCAGTGTTCCTGAGGAGGCCATCAGTCCAGGGATGACGGTGAATCAGATCGAGCTGAAGCTCCCTGAAGTGTCTCTGGACGACTGGAAGCGCCGTGGCTTCGTGGATTACGTGGTTCTTCTGGACTGGTTCAGCTGCGTCTCTGACCTCAGACTGGGCTCCACTCTACAGAGCCTGAAGGACGCTCTCTATAAGtgggACAGCAGCACTATCCTGCGCAGTGAGCCTCTGGTGCTGGACGGAGGTTATGAAAGCTGGCTGCTCTTTTATCCGATGTACACCAGCAACGCTAAAGTCAGACCCCCTCGACAGCAGACGGCCAGCAGCCTGCCCCAGCTGAACTTCTCGTACCCGTCTCTGGAGGAGCCCAAAcccgtgagtgtgtgtgaggagccTGCAGCGGCCCCGCAGCTCAACGGCAGGAGCAGTGACCCGGAGCCGCCCACAGAGCCGCCCGCAGCCACACCGGCGCCGCTCACACAGCCTGCTAAAGCAGAGCCCCCCTCCGCTCCCACCGCCTCGCCCCGACACACTCCACAGGTGGACCGCTCCAAAAAACCAGCCGTCAAACCGGCAGCGAGCGCTAAGCTCAGCGAGGAGCCCCCGGTTAGCGACGCCCCCGCGGCACACAACGGCCCCGTGGTCCCTGACCGCTCCGGCAAACCCCCGCTGGACCCCTCCAGAGCCCTGAGCGAGGAGGAGCGCCGGGAGATCCACGCCCAGACACTCGGCCTGATGGAGAAAGCTCGGAGAGAGCAGGAGCAGCGCAAACGAgccctggaggagaaagagcAGAGCGACaggaagaaggaggaggagaagcaGCAGGACAGGAAGAAGCTGGAGAGACAGAcggcagaagaagaagagcaggGAGACGCCAGAGACGACAAGAACAGGAGAACACAGAAAGATGTGCCTCTGGACCCTGCCATGAAGAGCATGTCCCTGGATTCACCTGCTCCCTTCAGTGCTagGGAGCCGCTGACGCGAGCACACAGTGAGGAGATGGGTCGGACCGTCCCTGGGCTGCCGGACGGCTGGATGAAGTTTCTGGACACGGTGACGGGCACCTACAGATACTACCACTCTCCCACCAACCGCGTGCACCTGTATCCTCCGGAGGTCCACACGCCTCAGGTCCAGCCCAAAGCCAAGCCTCCGCCGGCCGCCGAGAGCGAGAAGGAGAAGGAGCAGGAGCGCAAGAGAGAGAAGGAGCGGGAGAGAGAGCAGTCCAAACTCAAACGCTCGTACTCGTCTCCAGACATCAGCCAGGAGCTGAGCGGCGAGAGAAAACCTGCAGCTATACCCACCTTCAACAGAGAgaacaagCCGCTGACCGCCGCTGCGTACACTAAGGTGGAGATCACTCGTCCGTCTGCAGCGAAGATCCGGAACCTGAACCCGGTGTTTGGGGGTCAGGGGCCGTTGCTAACGGGCCTCCGTAACCTCGGCAACACCTGCTACATGAACTCCATCCTCCAGTGTCTGTGTAACACAGTCGCCATGGCGGAGTACTTCAACCGGAACTACTATCAGGACGACATTAACCGgGCCAATATTCTGGGTCATAAGGGCGAGGTGGCCGAGGAGTTCAGCGTCATCATGAAGGCGCTGTGGTCAGGACAGTATAAAATGATCAGCCCGCAGGATTTTAAAGGCACCATCTGTAAGATCAACAACCGCTTCTCCAGCTACGAGCACCAGGACTCTCAGGAGCTGCTGCTGTTCCTGATGGACGGCCTTCACGAGGACCTCAACAAGGCGGATAAACGGCGCGGCTATAAGGAGGAGGACATCGATCATCTGGACGACGTGAGCGCTGCGGAGCTGGCCTGGTCCAAACACAAGCTCCTGAACGAGTCCATCATCGTGGCTCTGTTTCAGGGTCAGTTCAAGTCTACGGTCCAGTGTATGAGCTGCCAGCACAAGTCACGCACCTTCGAGACCTTCATGTACCTGACTCTGGAGATGACCCCCAGCAGCAAGTGCTCTCTACAGgaCTGTCTGAAGCTCTTCTCTAAAGAGGAGCGTCTGACCGACAGCAACCGCTTCTACTGCCGCCACTGCAAGACTCACCGAGACGCCATCAAGAAGATGCAGATCTGGAAAGTTCCGCCCATTTTACTCGTACACTTGAAACGgtttAAATACGACGGCCGCTGGAGAGAGAAGCTGCAGACGCTGGTAGACTTTCCTCTGGATAACCTGGACCTCACACAGTACGTGATCGGACCCAAACAGAACCTGAAGAAGTACCACCTGTACGCTGTGTCTAATCATTACGGAGGGATGGACGGTGGTCACTACACAGCTTACTGTAAGAATCCTGTGAAGCAGCGCTGGTTCAAGTTCGACGATCACGAGGTGTCTGACATCTCCGCCTCCTCCGTCCGCTCGGCTGCCGCCTACATCTTCTTCTACTCCTCTCTATGAGGGTCGGCGATGGGTCGTAACCATGGCGACGGGAGATTGATGCATGTCTGACATGCAGCTATGGGTGGAGCTAAAGCCCTTTGCTTGAAGACTGATGGACACTTCTGCTGAGGGaacgtcctctctctctctctctctctctctctctctctctatgtctctctctctatgtctctctctcagtgggCGGTTCAGGGGCGTCTGtagcaggagtctgaacacaggAGCCTCGTCCCGCTCTGGACCGTGTGAGATTAGACGTCCATATATGCACACTATAATCTAAGCCGCTCATTAGACGTGCACCTGATGCTTAGGGAGAtgcgtttcatttatttatatggtgACCAAATATGACGGGTGCTGCCGGATCGAAGGCGAGGAATCACTCACAGACTCACTGGTGTTTGTTCACACCGCTTGGGCCCCGCTCTCTGTAGGCTAGTGTTCAGGGACCCGCTAACCTCCGCAGCGCAGTAACCCTCATCGACTGAGAGGACCCGATCGCAGCGGCCCCGGGGCCTTCATATCACACAGCTGTGTCTCTGTACTAATACTCATCTGAATCAGAACGGCTGCGGCATGAGCTTCTGATGGACTGACTCGTTCTCTCACCTGTTTCTTATAATATTAAGCGCATTCTTTAAATCCATGTATTAGCCTATAAAccttatacatgcataaataaaacagaagtaACACACGTGC
>XM_043264279.1
GGGTTTGAATCCGCGCACTTCCGCGTTTGATCGAGCAGTTTGAGGTGTTTACTGTCATCGGTGCGAATAAACTTGACTTTTCTTCGCTGACCTGCTGCTTCCAGCGAGTTTTCTGACAGGATTTGAGTTCACGCTGTGTTCAGGGAATATGAGCTGAAAATGCCGTCCGTGTCCACCGGAGTGAAGGATCTGTATCTGTCCACATCACTGGGCGATCTGAACAAGAAAGCAGAAATCAAGCCGGATAAAACCAGCACCAGACACTATGTCCAGAGCGCCTGTAAGATCTTCAAAGCGGCTGAGGAGTGTCGTCTGGACCGCGATGAGGAGAAAGCGTATGTCCTCTACATGAAGTACCTGACCGTCTATGACCTCATCAAGAAGAGACCGGACTTCAAGCAGCAGCAGGATTTCTTCCTGTCTATGCTCGGACCGACCAGCTTTAAAAAGGCCATTGAGGAGGCAGAGAAGCTTTCAGAGAGTTTGAAGCTCCGGTATGAGGAAGTAGAAGTGCGCAAACAgctggaagagaaagagagaaaggaggagagGAGTCGGCGAGAAGAAAGAATTGAAAAAGATGGCCGTGCTTCCCTGAGAGGAGCTTCAGAGAAGAAGGACAGTAAGAAGGTTAAAGAGGAGCCCAATAACAGCGGATGTGATAAAGGAAGCATCAGCGCTAAGGATCTGTTCCAGCTGATGAAGGATCCCAGTATAAGTGTGCTGGTGATGGATGCACGGAGCAGGCAGGACTTCGAGGAGTCTCAGATGTGTGTCCCGTCTCAGACGTGTATCAGTGTTCCTGAGGAGGCCATCAGTCCAGGGATGACGGTGAATCAGATCGAGCTGAAGCTCCCTGAAGTGTCTCTGGACGACTGGAAGCGCCGTGGCTTCGTGGATTACGTGGTTCTTCTGGACTGGTTCAGCTGCGTCTCTGACCTCAGACTGGGCTCCACTCTACAGAGCCTGAAGGACGCTCTCTATAAGtgggACAGCAGCACTATCCTGCGCAGTGAGCCTCTGGTGCTGGACGGAGGTTATGAAAGCTGGCTGCTCTTTTATCCGATGTACACCAGCAACGCTAAAGTCAGACCCCCTCGACAGCAGACGGCCAGCAGCCTGCCCCAGCTGAACTTCTCGTACCCGTCTCTGGAGGAGCCCAAAcccgtgagtgtgtgtgaggagccTGCAGCGGCCCCGCAGCTCAACGGCAGGAGCAGTGACCCGGAGCCGCCCACAGAGCCGCCCGCAGCCACACCGGCGCCGCTCACACAGCCTGCTAAAGCAGAGCCCCCCTCCGCTCCCACCGCCTCGCCCCGACACACTCCACAGGTGGACCGCTCCAAAAAACCAGCCGTCAAACCGGCAGCGAGCGCTAAGCTCAGCGAGGAGCCCCCGGTTAGCGACGCCCCCGCGGCACACAACGGCCCCGTGGTCCCTGACCGCTCCGGCAAACCCCCGCTGGACCCCTCCAGAGCCCTGAGCGAGGAGGAGCGCCGGGAGATCCACGCCCAGACACTCGGCCTGATGGAGAAAGCTCGGAGAGAGCAGGAGCAGCGCAAACGAgccctggaggagaaagagcAGAGCGACaggaagaaggaggaggagaagcaGCAGGACAGGAAGAAGCTGGAGAGACAGAcggcagaagaagaagagcaggGAGACGCCAGAGACGACAAGAACAGGAGAACACAGAAAGATGTGCCTCTGGACCCTGCCATGAAGAGCATGTCCCTGGATTCACCTGCTCCCTTCAGTGCTagGGAGCCGCTGACGCGAGCACACAGTGAGGAGATGGGTCGGACCGTCCCTGGGCTGCCGGACGGCTGGATGAAGTTTCTGGACACGGTGACGGGCACCTACAGATACTACCACTCTCCCACCAACCGCGTGCACCTGTATCCTCCGGAGGTCCACACGCCTCAGGTCCAGCCCAAAGCCAAGCCTCCGCCGGCCGCCGAGAGCGAGAAGGAGAAGGAGCAGGAGCGCAAGAGAGAGAAGGAGCGGGAGAGAGAGCAGTCCAAACTCAAACGCTCGTACTCGTCTCCAGACATCAGCCAGGAGCTGAGCGGCGAGAGAAAACCTGCAGCTATACCCACCTTCAACAGAGAgaacaagCCGCTGACCGCCGCTGCGTACACTAAGGTGGAGATCACTCGTCCGTCTGCAGCGAAGATCCGGAACCTGAACCCGGTGTTTGGGGGTCAGGGGCCGTTGCTAACGGGCCTCCGTAACCTCGGCAACACCTGCTACATGAACTCCATCCTCCAGTGTCTGTGTAACACAGTCGCCATGGCGGAGTACTTCAACCGGAACTACTATCAGGACGACATTAACCGgGCCAATATTCTGGGTCATAAGGGCGAGGTGGCCGAGGAGTTCAGCGTCATCATGAAGGCGCTGTGGTCAGGACAGTATAAAATGATCAGCCCGCAGGATTTTAAAGGCACCATCTGTAAGATCAACAACCGCTTCTCCAGCTACGAGCACCAGGACTCTCAGGAGCTGCTGCTGTTCCTGATGGACGGCCTTCACGAGGACCTCAACAAGGCGGATAAACGGCGCGGCTATAAGGAGGAGGACATCGATCATCTGGACGACGTGAGCGCTGCGGAGCTGGCCTGGTCCAAACACAAGCTCCTGAACGAGTCCATCATCGTGGCTCTGTTTCAGGGTCAGTTCAAGTCTACGGTCCAGTGTATGAGCTGCCAGCACAAGTCACGCACCTTCGAGACCTTCATGTACCTGACTCTGGAGATGACCCCCAGCAGCAAGTGCTCTCTACAGgaCTGTCTGAAGCTCTTCTCTAAAGAGGAGCGTCTGACCGACAGCAACCGCTTCTACTGCCGCCACTGCAAGACTCACCGAGACGCCATCAAGAAGATGCAGATCTGGAAAGTTCCGCCCATTTTACTCGTACACTTGAAACGgtttAAATACGACGGCCGCTGGAGAGAGAAGCTGCAGACGCTGGTAGACTTTCCTCTGGATAACCTGGACCTCACACAGTACGTGATCGGACCCAAACAGAACCTGAAGAAGTACCACCTGTACGCTGTGTCTAATCATTACGGAGGGATGGACGGTGGTCACTACACAGCTTACTGTAAGAATCCTGTGAAGCAGCGCTGGTTCAAGTTCGACGATCACGAGGTGTCTGACATCTCCGCCTCCTCCGTCCGCTCGGCTGCCGCCTACATCTTCTTCTACTCCTCTCTATGAGGGTCGGCGATGGGTCGTAACCATGGCGACGGGAGATTGATGCATGTCTGACATGCAGCTATGGGTGGAGCTAAAGCCCTTTGCTTGAAGACTGATGGACACTTCTGCTGAGGGaacgtcctctctctctctctctctctctctctctctctctatgtctctctctctatgtctctctctcagtgggCGGTTCAGGGGCGTCTGtagcaggagtctgaacacaggAGCCTCGTCCCGCTCTGGACCGTGTGAGATTAGACGTCCATATATGCACACTATAATCTAAGCCGCTCATTAGACGTGCACCTGATGCTTAGGGAGAtgcgtttcatttatttatatggtgACCAAATATGACGGGTGCTGCCGGATCGAAGGCGAGGAATCACTCACAGACTCACTGGTGTTTGTTCACACCGCTTGGGCCCCGCTCTCTGTAGGCTAGTGTTCAGGGACCCGCTAACCTCCGCAGCGCAGTAACCCTCATCGACTGAGAGGACCCGATCGCAGCGGCCCCGGGGCCTTCATATCACACAGCTGTGTCTCTGTACTAATACTCATCTGAATCAGAACGGCTGCGGCATGAGCTTCTGATGGACTGACTCGTTCTCTCACCTGTTTCTTATAATATTAAGCGCATTCTTTAAATCCATGTATTAGCCTATAAAccttatacatgcataaataaaacagaagtaACACACGTGC

Function

symbol description
usp8 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within regulation of cilium assembly. Predicted to be active in several cellular components, including dendritic spine; midbody; and postsynaptic density. Predicted to be extrinsic component of endosome membrane and extrinsic component of plasma membrane. Human ortholog(s) of this gene implicated in ACTH-secreting pituitary adenoma. Orthologous to human USP8 (ubiquitin specific peptidase 8).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like

GO: NA

KEGG:

id description
K11839 USP8, UBP5; ubiquitin carboxyl-terminal hydrolase 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264278.1 True 3939 mRNA 0.55 19 16442480 16452118
XM_043264279.1 False 3936 mRNA 0.55 19 16442480 16452118

Neighbor

gene id symbol gene type direction distance location
slc27a2a NA coding upstream 16306 16420194 ~ 16426174 (+)
zgc:158482 LOC107727401,LOC107703947,LOC107569985 coding upstream 23461 16411365 ~ 16419019 (+)
LOC122362844 fsd2,LOC107726333 coding upstream 73670 16362245 ~ 16368810 (+)
homer2 homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443 coding upstream 93575 16338045 ~ 16348905 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding upstream 108020 16329709 ~ 16334460 (+)
mibp2 mibp2,LOC107713061,LOC107690135,LOC107710817,LOC107663471,LOC107595359,LOC107595360,LOC107097782,LOC107381735 coding downstream 49816 16501934 ~ 16504465 (+)
slc30a4 slc30a4 coding downstream 62052 16514170 ~ 16522683 (+)
LOC122323202 nnt2,LOC108412674 coding downstream 84341 16536459 ~ 16550717 (+)
secisbp2l secisbp2l,LOC107573840,LOC107740797,LOC107713195,LOC106587693,LOC107698883 coding downstream 140471 16592589 ~ 16610126 (+)
fbn1 fbn1,LOC107713176,LOC107595388,LOC102779271 coding downstream 166052 16618170 ~ 16678066 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding upstream 35856 16405455 ~ 16406624 (+)
LOC122362848 NA non-coding upstream 63814 16376438 ~ 16378666 (+)
G126716 homer2,LOC107569981,LOC107703939,LOC107595365 non-coding upstream 78275 16267014 ~ 16364205 (+)
G126722 whamm,LOC107595364 non-coding upstream 80834 16355231 ~ 16361646 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding upstream 230897 16208584 ~ 16211583 (+)
G126723 NA non-coding downstream 1879 16453997 ~ 16494634 (+)
G126755 NA non-coding downstream 10674 16462792 ~ 16463512 (+)
G126726 NA non-coding downstream 39415 16491533 ~ 16493553 (+)
G126779 NA non-coding downstream 57505 16509623 ~ 16525107 (+)
G126766 fgf7,LOC107663468,LOC107663467,LOC107739939,LOC107574045,LOC107595354 non-coding downstream 101457 16553575 ~ 16559719 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 171213 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 386853 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 488827 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1394587 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1532323 14906616 ~ 14910157 (+)
G126820 NA other downstream 301591 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 622076 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 677804 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 851651 17303769 ~ 17309158 (+)
G127098 NA other downstream 958567 17410685 ~ 17411593 (+)

Expression


Co-expression Network