zgc:158482 (LOC107727401,LOC107703947,LOC107569985)


Basic Information

Item Value
gene id zgc:158482
gene name LOC107727401,LOC107703947,LOC107569985
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16411365 ~ 16419019 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264280.1
CGTTATATCAGTTCTGTTAAATTGTAAATGATCCATCATCTGTCTACAGACTGATGTCAGCTGATGCAAAACAACCGAAACCGGAAGCAGCAGCGAATCCCGAAGAGTCCCAGCTCGGTGAAAGTTAAAGTCCGTCTCGCTCCGCCTTCAGAGGAACGCTTTGAGCTCAAACACGGACCGCGAGGGAAAGATGCTGCTCGCGTCTCTGCTGCTGGGAGCTCTGCTCATCGCTCCTCTGCTTCTCAGGAGGTTTCTTCCGTACTTCTGGACGGATCTCGTCTATCACGCGGAGCTGCTGAGGATTTTACTCAAGTTCGTGTCCCGCAGAAGAAGGCGCCCGCTGTTCTTGGCTCTGGACCGGTTTCTAGAGCAAGCGAAAACGCGGCCGAACAAGGCGTTCATCGTGTTCGAGAACAAGCGCTACTCGTTCAGAGACGCGGACCGAGAGAGCAACCGGATAGCGCACGCGTTGCGGGACGCGTCGGCTCTGAGCCCGGGAGACACGGCGCTTCTGTTCATGCACAACGAGCCCGAGTTCATCTTCTGCTGGCTCGCGCTGGCCAAGCTCGGCTGCGCATGCGCGCTCCTCAACAGCAGCATCCGCGCGCGGAGCCTGACCTCGAGCGTCCGGTGCTGCCGCGGCGCCACGGTCCTGATCGCGTCCGCAGAGCTGCAGGAGGCCGTTGAGGAGGTGTATGAAGATCTCCAGCAGGAGGGTCTGACGAGGATCTTCATCACAGCTGAGGAGCTCCGATCATCACGTCTGAAGAGTCTGACTCGAGCGGCGCAGGAGTCTTCAGACGCTGATGTTCCTCAGAAGCTCAGAGCGAACGTGTCCTTCACGTCTCCAGCCGTCTACATCTACACGTCTGGAACCACAGgtctTCCTAAAGCAGCAGTGATCAATCAAACGCGTCTCCTCGCTGCTCTCGCTGTGCTGGCGTCGAACGGCGTAACAGATACTGACGTGATTTACGTGACTCTTCCTCTCTATCACACAGCCGGCTTCCTCGTGGGCTTCATGGGCTCCATagagacaggcTCAACTATAATTCTACGGCGCAGGTTCTCTGCGTCTCGGTTCTGGGACGAGTGCCGGGCTCACGGTGTGACGGTGATTCAGTACATCGGAGAGGTTCTGCGCTATCTGTGTAACACACCGCAGAGAGCAAGTGATCAGCAGCACGGCGTGCGATTGGCCGTCGGGAACGGGCTCCGCTCAGACGTCTGGAGAGAGTTCCTCAAGCGCTTCGGTCACATTGAAATCAGAGAGTTTTACGCCTCCACGGAGGGAAACGTGGGCTTCGTGAACTACGCTGGAAAGCTGGGCGCTGTCGGACGGGTCAGCTTTCTGCACAAAAAACTGTTCCCCTACGCCATCATTCAGTACAACACGGAGCTGGACGAGCCGCTCAGAGACTCCAGAGGCCTGTGTGTCGAGGTGCctaaaggccATACGGGGCTGTTGGTGTCCAAAATTACAGAAATCGCTCCTTTTGTTGGTTATGCACAAAACGATCAgcaaacagaaaagaagaggCTGCGCAATGTTTTCAAGCACGGCgatgtttattttaacagcGGTGATCTGATGAAGATTGATCATGACAACTTTATCTACTTCCAGGATCGAGTGGGAGACACATTCAGGTGGAAAGGAGAGAATGTGGCCACTACTGAAGTCTCTGACATCATCAGCATGCTGGACTTTGTCGAAGAGGCCAATGTTTACGGAGTTCAGGTTCCAGGTCATGAAGGACGGATCGGGATGGCTGCAGTAAAACTGAAGGACGGGAAGGAGTTTGAGTGCAAGAAAGCATTTGAGCACGTCTGCCGGTTCCTGCCCGTTTACGCTCGACCTCGTTTCATACGCATTCAGAGCTCGATGGACATCACCTCCACCTTTAAACAGCTGAAGCTGAAGCTGGTGGAGGCTGGATTCAATCCCAGCATGACGTCTGACTCGCTGTACTTTCTGTGTGAACGAGAGCAGACCTACGTCTCTCTGAACGCCTCCATCTACCGACAGATCCTGTCTCACAGCATCAAACTCTGACTGCTCTCCTGTGATGAGATCAACAATCTTCAAATACTATCATCTGTTCAAAGCCACTGATACAGCAAACTCTTTTTTACAAACCTGATCAGTGTCATATTTTGCTAAACGAGTGTAAAAAGCTGTTACAGCTGTTTTATCTTTAGAGCTCTTTTGATCACACTGAATCTATGATTGTTGAAGATGTTCTTTATGCTAGTatgcaatgtttgtttttatctattttatatttgattctCACATGAATCTTGACTGAAATAACAGTGTGTGGAACTGCTtgcattaaagtattttttatgaattattgtttcattcatttcatttaatatgctGTTAATCGCTTTAGTTtgtatttgtgtaaaataagtTTAG

Function

NR:

description
PREDICTED: very long-chain acyl-CoA synthetase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00666 K00666; fatty-acyl-CoA synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264280.1 True 2428 mRNA 0.51 10 16411365 16419019

Neighbor

gene id symbol gene type direction distance location
LOC122362844 fsd2,LOC107726333 coding upstream 42555 16362245 ~ 16368810 (+)
homer2 homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443 coding upstream 62460 16338045 ~ 16348905 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding upstream 76905 16329709 ~ 16334460 (+)
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 292603 16115991 ~ 16118762 (+)
LOC122362747 kifc3,LOC107670565 coding upstream 295521 16090090 ~ 16115844 (+)
slc27a2a NA coding downstream 1175 16420194 ~ 16426174 (+)
usp8 usp8,LOC107595392,LOC107715249,LOC107665382 coding downstream 23461 16442480 ~ 16452118 (+)
mibp2 mibp2,LOC107713061,LOC107690135,LOC107710817,LOC107663471,LOC107595359,LOC107595360,LOC107097782,LOC107381735 coding downstream 82915 16501934 ~ 16504465 (+)
slc30a4 slc30a4 coding downstream 95151 16514170 ~ 16522683 (+)
LOC122323202 nnt2,LOC108412674 coding downstream 117440 16536459 ~ 16550717 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding upstream 4741 16405455 ~ 16406624 (+)
LOC122362848 NA non-coding upstream 32699 16376438 ~ 16378666 (+)
G126716 homer2,LOC107569981,LOC107703939,LOC107595365 non-coding upstream 47160 16267014 ~ 16364205 (+)
G126722 whamm,LOC107595364 non-coding upstream 49719 16355231 ~ 16361646 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding upstream 199782 16208584 ~ 16211583 (+)
G126723 NA non-coding downstream 34978 16453997 ~ 16494634 (+)
G126755 NA non-coding downstream 43773 16462792 ~ 16463512 (+)
G126726 NA non-coding downstream 72514 16491533 ~ 16493553 (+)
G126779 NA non-coding downstream 90604 16509623 ~ 16525107 (+)
G126766 fgf7,LOC107663468,LOC107663467,LOC107739939,LOC107574045,LOC107595354 non-coding downstream 134556 16553575 ~ 16559719 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 140098 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 355738 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 457712 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1363472 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1501208 14906616 ~ 14910157 (+)
G126820 NA other downstream 334690 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 655175 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 710903 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 884750 17303769 ~ 17309158 (+)
G127098 NA other downstream 991666 17410685 ~ 17411593 (+)

Expression


Co-expression Network