zgc:158464 (LOC107572397,LOC107740353,LOC107692470,LOC107599765,LOC107711356)


Basic Information

Item Value
gene id zgc:158464
gene name LOC107572397,LOC107740353,LOC107692470,LOC107599765,LOC107711356
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 15955905 ~ 16038911 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264305.1
acacacgcacacgcacacgcacacgcacatacacatacGCGCGCGCACACGGGCACAGGGCGCGCGCGCACGGAGAGAGCGCAGAGTTTCTCCAAACAGAAAGTGAACGGGAGCCACGGCAGAGCTCGGATTTATCTCGTCTCGGAGTTGCGAGCGATGCGCTGGCAGCATGGCCAGATGGTTCAAGGAGCACCTGGGTTTCAAAACCACCAAAGCCCCGCCACCGGCGCCTCCGAAACCGGACTACCGACACTTCCACACCGCCGTGTCCAGCCTCCAGACGCCGCCGGGCACCGGGCTTCTGTCCGCGCAGCCAGACATCCTCACCGCCTACAAACTCCAGAAGGAGCTGGACTTCGAGGATCCGTACACGCCGGGCGGAACCGTGCCCTTCTCCACCGGACCGAGCTCGGCGGCGGAGGTCAAGTACGTGTCTCCGAAGCACCGGCTGATCAAGGTGGAGACCGCGGAGCGCAGCGCGGTCAAAGCCCCCTGCTCCCCGCCCGCGGAGCCCGAGAACGGCACGCAGGAGAAGCTCATCATCCTAGAGGACTACGCCGACCCCTTTGACGCAGCGGACCAGGCGGGCGGCACTCAGACGGTCACAGAAAAGCCAACGGAGAACGACGGCTACATGGAGCCCTACGAAGCTCAGAAGATGATGGCTGAGATCCGAGGCGGCCGCGCTCCTAAAGACGGTCCGGTCCGGCAGCTGCCTCTGTATGACACGCCGTACGAGCCGGAGGAGAACGGAGGAGATCCGGACGCAGGCGTGTGTTCCCGAGAGAGCCGGCTGCCGCAGGACGACGAGAGGCCGCCGGAGGAGTACGACCAGCCCTGGGAGTGGAAGAAAGACCGCATCTCCAAAGCCTTCGCAGTAGAGATTAAAGTGATAAAGGATCTGCCGTGGCCTCCTCCGGTCGGGCAGCTGAACTCCAGTCCTCCTCTGATGGAGGCTCCATCTTCTCCAGGAGCCTCAGCCTGTGATCAGCTCCAGCACGTGCAGTTCGACGGCGTGGAGAAGGAGCTGAAGTGCATTGTCCGCTGCAGAGGCTCC

Function

NR:

description
PREDICTED: SH2 domain-containing adapter protein F isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264305.1 True 1057 mRNA 0.64 5 15955905 16038911

Neighbor

gene id symbol gene type direction distance location
ubl7b LOC107668695,LOC107579017 coding upstream 141052 15810671 ~ 15814853 (+)
insyn1 LOC107692472,LOC107740352,LOC107656969,LOC107722291,LOC107581104 coding upstream 285748 15613403 ~ 15670157 (+)
scamp5b scamp5b,LOC107740350,LOC107722282,LOC107599784,LOC108430449 coding upstream 436988 15511535 ~ 15518917 (+)
mob2b mob2,mob2b,LOC107722284,LOC107656971,LOC108430083,LOC108264656 coding upstream 473208 15449341 ~ 15482697 (+)
dusp8b LOC107713871,LOC107692476,LOC107569904,LOC107599770 coding upstream 513774 15432956 ~ 15442131 (+)
LOC122362746 cngb1a,LOC107670565,LOC107679572 coding downstream 25056 16063967 ~ 16075424 (+)
LOC122362951 cngb1a coding downstream 36560 16075471 ~ 16085414 (+)
LOC122362747 kifc3,LOC107670565 coding downstream 51179 16090090 ~ 16115844 (+)
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding downstream 77080 16115991 ~ 16118762 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding downstream 290798 16329709 ~ 16334460 (+)
G126605 NA non-coding upstream 127552 15825427 ~ 15828353 (+)
G126591 NA non-coding upstream 135575 15760963 ~ 15820330 (+)
G126458 NA non-coding upstream 889328 15066346 ~ 15066577 (+)
G126347 NA non-coding upstream 971157 14932321 ~ 14984748 (+)
G126345 ltbp4,LOC107724163,LOC107566282,LOC107692515 non-coding upstream 1018271 14936925 ~ 14937634 (+)
LOC122362955 NA non-coding downstream 19623 16058534 ~ 16058974 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding downstream 169673 16208584 ~ 16211583 (+)
G126716 homer2,LOC107569981,LOC107703939,LOC107595365 non-coding downstream 228103 16267014 ~ 16364205 (+)
G126722 whamm,LOC107595364 non-coding downstream 316320 16355231 ~ 16361646 (+)
LOC122362848 NA non-coding downstream 337527 16376438 ~ 16378666 (+)
LOC122362954 LOC107740354 other upstream 2252 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 908012 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1045748 14906616 ~ 14910157 (+)
gemin7 NA other upstream 1127613 14826788 ~ 14828292 (+)
G126146 gramd1bb other upstream 2014536 13940095 ~ 13941369 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other downstream 8158 16047069 ~ 16055627 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other downstream 224928 16263839 ~ 16271267 (+)
G126820 NA other downstream 714798 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 1035283 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 1091011 17129922 ~ 17171335 (+)

Expression


Co-expression Network