LOC122362746 (cngb1a,LOC107670565,LOC107679572)


Basic Information

Item Value
gene id LOC122362746
gene name cngb1a,LOC107670565,LOC107679572
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16063967 ~ 16075424 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264307.1
ACCAGCATGACAGAGATCGATTCAAAAACTCCCGGCATGGTGGGCTGGATTGTTCAGGGTCTGGGCCTTTCGATGCCACAGCCAGCGCTTAAAAACAAAGAAGGATGTTTGGAGGACGGGAAGGTTGTGCAAAATGCAGGCAGTGCTCGGTCAGCTCCCGGAGACCTCGTTCTTGAGGAGGTCGACTCTGAAGATGAAGCTCAAGAAAAGTATACATGTCCAACAGCGAACTCACTGCCAAATTCACAACCTCAGTCCCAACCACAAACACCTTGGTCACCGGAACAGTCTCTTCCACTGAGCGTCACCACACCCTCACAAGCACACATAGAACTGGAGGACGCAGAAACTCAAACTATCTGGAGAAAAGCACTCTGCATCCTGCAGGACCCGTGCGATATGGTGCTGGAGGAGGTGGACTCGGACTGGGAGGCCCAGCAGAGGGAGCAGGGCCCGGGGCAGGAGGGCTCTTCCCTGCTGCAGGCGCTGCCCAGCATCCTGCCTCACGTGCTGGCCATGCAGGAGCAGGAGGACGCAGAGACCCAGACCGAGCGCTGGACGCCGCTTATCGAGAGCATCAAGAAGGAAGCCGAGGAGACCGCCATAGCCAACATAGAGGAGAGactgCAGCTGGAGCGCGTGGAAGCGGCTCGCATGGCGGAGGATCTGGCCCGGCAGGCCGCCGAACTGGCCGTCAGACAGCTGGAGGAAGAGCACACCACGCAGATCGTCATCGACACCAAACCCGAAGAGCCGGACGACGAGGAGCAGAGCCTGGTGGACGTGTGCCCGGCGGAGCCCTCGCCGCAGGAGTCTGAGGTCTCAGATCAGGCTCCCCAAAGTCCTCCGCCGCAGCCTGTGACCGCTCAGCCTCAACGGGCATCTTTACCTCCTGAAGCTGACCAGGAAGAGGAACCTGCTGAAGAAGGATGCGGAGCACCTGCTAGCTGCACTGGCGTAAAGAGCTGGATTCTCTGCATCCCCCCTGCTTCTGCATGTCTGAGCAGCTTGAATCTGCTGAAAAGCAGTAACGTTCCCCTGCCCAAGATGCCCTCCGATCTCCTGCTGCTATACCAGGGGATGTCCCAGCTCCCGAAACAAGCCAACGAGTGCTTCCAGAACGTTCTCCACCGCCTCAACATCCTCAAGCCCATGTAGAA

Function

symbol description
cngb1a Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 45. Orthologous to human CNGB1 (cyclic nucleotide gated channel subunit beta 1).

NR:

description
cyclic nucleotide-gated cation channel beta-1 isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264307.1 True 1160 mRNA 0.59 10 16063967 16075424

Neighbor

gene id symbol gene type direction distance location
zgc:158464 LOC107572397,LOC107740353,LOC107692470,LOC107599765,LOC107711356 coding upstream 25056 15955905 ~ 16038911 (+)
ubl7b LOC107668695,LOC107579017 coding upstream 249114 15810671 ~ 15814853 (+)
insyn1 LOC107692472,LOC107740352,LOC107656969,LOC107722291,LOC107581104 coding upstream 393810 15613403 ~ 15670157 (+)
scamp5b scamp5b,LOC107740350,LOC107722282,LOC107599784,LOC108430449 coding upstream 545050 15511535 ~ 15518917 (+)
mob2b mob2,mob2b,LOC107722284,LOC107656971,LOC108430083,LOC108264656 coding upstream 581270 15449341 ~ 15482697 (+)
LOC122362951 cngb1a coding downstream 47 16075471 ~ 16085414 (+)
LOC122362747 kifc3,LOC107670565 coding downstream 14666 16090090 ~ 16115844 (+)
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding downstream 40567 16115991 ~ 16118762 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding downstream 254285 16329709 ~ 16334460 (+)
homer2 homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443 coding downstream 262621 16338045 ~ 16348905 (+)
LOC122362955 NA non-coding upstream 4993 16058534 ~ 16058974 (+)
G126626 NA non-coding upstream 60149 15999452 ~ 16003818 (+)
G126605 NA non-coding upstream 235614 15825427 ~ 15828353 (+)
G126591 NA non-coding upstream 243637 15760963 ~ 15820330 (+)
G126458 NA non-coding upstream 997390 15066346 ~ 15066577 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding downstream 133160 16208584 ~ 16211583 (+)
G126716 homer2,LOC107569981,LOC107703939,LOC107595365 non-coding downstream 191590 16267014 ~ 16364205 (+)
G126722 whamm,LOC107595364 non-coding downstream 279807 16355231 ~ 16361646 (+)
LOC122362848 NA non-coding downstream 301014 16376438 ~ 16378666 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding downstream 330031 16405455 ~ 16406624 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 8340 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 110314 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1016074 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1153810 14906616 ~ 14910157 (+)
gemin7 NA other upstream 1235675 14826788 ~ 14828292 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other downstream 188415 16263839 ~ 16271267 (+)
G126820 NA other downstream 678285 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 998770 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 1054498 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 1228345 17303769 ~ 17309158 (+)

Expression


Co-expression Network