XLOC_006747 (TC2N)


Basic Information

Item Value
gene id XLOC_006747
gene name TC2N
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33141279 ~ 33153889 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012991
CTGCAGTAACATGATGACTGACTGCATCAAAAACTGCTGCAGGACGTTTGCGTCCAAGAAAAATGAACCAGAGATTCAGATGATAAAAATTCGAGCTCCTGTTAAATCAGCTGCTGAGTGCAATGTGAAGAGGGGTGTTGGAGTTTCAGAGGATTATCTGCTTTCTAAACTGCCTCCGGACGGCCGAGAGGTTCCTTTCATCATCCCAACCTTCAAACCTTCATACATCCAGCCGAGAGGAGCACAATACTCTGGCCACAACATTGGACAGCAGAGCACCACAAGGTCCACTTACGCAGAAAGGAAGGCAGAGCTGGCAGGAGTCAGTCAAATGATGTACGATCCTGATGTGAACTTAAACAGCAGTCATATGATCAGCTACGTGTCGCCAGGTTCACTGAGACGCCCTACTCTGAAAAACAGAGTCAACTACAACCCTGGCACAGGTTTGGATCACAGCGACGCACAGAGACTCTGTCTGTCCATGTTCGATCTGTCAAATCCTCAGGGCCGTGTTGAGCGTTATGATTCTGTATCCAGCATCCAGAGCAGCACATCCTCCGTTCAGGATTCCTTTGGGAGCAGCCGTAGTCTAGAATCCATCACGCTGTCTGGCGATGAGCGGGATCGTGAGCCGGGGAAAGTGTGTGTTCACCTGAAGTATGAGGCGGCGGTGGAGCAGGTGTGGATCACCTTAGTAAAGTGCACAGACTTGAGTGTCTATAATGAAAGAGTGGAGCAGCAGAAGATTGGGGTTAAAGGCGTCATCACCGTGAACAAGCCGGTCCGGTTTAAGAGTACGCTTAAGGAAGCATCAGAAGACACTGTCTTCATGGAGACATTTGTGTTCACGCTGAACCTGGAGCAGATCCGCAGGTCTGCACTAGTGCTGCGGCTGCAGGCTCACACACCACGCAAACGCACACTGGGGGAGTGTGTGCTGTCTCTACGAAGCCTCGGACCGCAGGAAACAAAGCACTGGCTAGAGTTCAAGCATCCTTCTAAAACACATGTGTGCCATGCTGAGCTTCAGCTGGCCTTGTGTTTCCAGCCTGTGAACAGTCGAATGCAGCTCCAGATCCTCAGCACTCAAAACCTTCCTTCATCCTCCTCACCGCTCACACAGAGTTACTTTGTGAAGGTTGACTTGCTGGGTGAGGGTAAGTTCTTACTGAAGAGGAAGACGAAGGCGGTGAAGTCTTCAGGAGGGCAGGTCCAGTGGGGAGAAGTGCTTCATTTCCCTATCACCAGTCAAGACCACAATCTGCAACTGTCAGTTAAACTCTACAGCCGCAGCTCAGTGAGGAGAAAACATCTGCTGGGACAGGTGCTCTTGAGTTTGGACAGCAGTTCTCCTGAGGCAGTGGAGCAATGGAAGGATGCAATGGCTAATCCTGAAAAAGTGGTGACATCATGGCACAGAGTTAGTCGACCCTGAAACAAGAAAGATGCTATATTTTTGAGCTAAGTGCATTTTAaatgcaacttaaaaaaaaacttgttcatgtTCTTGTTGAAATATGATTATTGTAAGTGGAATGCATTTGTCTAAAATGCTGTGGTAGTACACACACGTTTACATGTATAAACTGAGTCGGACCAGTTGAGTCGCTCCTAATGTAGCTAATCTAGTTTGT

Function

symbol description
tc2n Predicted to be active in nucleus.

GO: NA

KEGG:

id description
ko04147 Exosome

Ensembl:

ensembl_id ENSDARG00000095067

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012991 True 1637 mRNA 0.48 11 33141279 33153889

Neighbor

gene id symbol gene type direction distance location
XLOC_006746 plek2 coding downstream 6668 33123484 ~ 33134611 (-)
XLOC_006745 zfyve26 coding downstream 26345 33066605 ~ 33114934 (-)
XLOC_006744 vti1b coding downstream 86423 33040436 ~ 33054856 (-)
XLOC_006743 rbm25a coding downstream 118907 33017561 ~ 33022372 (-)
XLOC_006742 rbm25a coding downstream 131545 32997020 ~ 33009734 (-)
XLOC_006748 fbln5 coding upstream 1539 33155428 ~ 33207424 (-)
XLOC_006749 golga5 coding upstream 57125 33211014 ~ 33227411 (-)
XLOC_006750 rtf1 coding upstream 75557 33229446 ~ 33246154 (-)
XLOC_006751 nusap1 coding upstream 97832 33251721 ~ 33256667 (-)
XLOC_006752 NA coding upstream 107242 33261131 ~ 33301170 (-)
XLOC_006471 BX537274.2 misc downstream 22876374 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32315054 825904 ~ 826225 (-)
XLOC_006741 NA non-coding downstream 144783 32946711 ~ 32996496 (-)
XLOC_006738 CU019663.1 non-coding downstream 333638 32793864 ~ 32807641 (-)
XLOC_006731 NA non-coding downstream 574023 32457931 ~ 32567256 (-)
XLOC_006732 NA non-coding downstream 646407 32492067 ~ 32494872 (-)
XLOC_006730 NA non-coding downstream 685286 32069898 ~ 32455993 (-)
XLOC_006757 NA non-coding upstream 298549 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 303634 33457523 ~ 33459318 (-)
XLOC_006768 BX649403.1 non-coding upstream 1484740 34638629 ~ 34638746 (-)
XLOC_006769 BX649403.2 non-coding upstream 1490261 34644150 ~ 34644281 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07480048_07492395 NA coding CI01000012 null 7480048 ~ 7492766 (+)