sdr42e1 (sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813)


Basic Information

Item Value
gene id sdr42e1
gene name sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17883618 ~ 17887211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264448.1
TCGCCACGCCCCCACGGCGTCGCGCACGCCCACTACGCTCGTGGCCACGCCCCCTCGCCTGCCGCTCTATGATCATAATAACAGCAGCGACGTACGTTTTTTGCCGACAGTTCATCTTCAGCCAATCAAAGCGAGGCATCGCTCACTCTTATCCAATGAGCACGCGCGACTGTGTAACCCCGCCCATTCACGCGTTTCCTAGGAAGTGCAGGTTACGCACACTTTGTGATCGATTCAAAGCGCGATCGCAGAGattcCGCTCTCCCTGCCTCTTTAACACAATGGAAGTCAACAGAACGGGCAGAACATACCTCGTAACCGGTGGAGGAGGTTATTTCGGATTCCGTCTCGCCTGTGCTCTCCTCAAAACCTCCTCGAGCGTCGTGCTGCTTGACGTGAGGCCGCCGAGCCAGGAGCTGCCGGAGGGCACCGTATTCGTCCGGGCCGATGTCCGCGACTACGCTCGGGTGGAAGAAGCGGTCCGCGGCGCGAGCTGCGTGTTCCACGTCGCCTCCTACGGGATGTCCGGACGCGAGCAGCTCGATCGAAAACTCATCGAGGAGGTGAACGTGCAGGGGACGGAGAACGTCCTCAGGGCCTGCGTGGCGCACGGCGTCCCCCGTTTGGTCTACACGAGCACGTATAACGTGGTGTTCGGGGGCCAGGAGATTAAGGGCGGCGACGAAAGCCTCCCTTACTTCCCCTTGCACCTGCACCCCGATCACTACTCCAGGACTAAGTCCGTAGCCGAGATGCGGGTGTTAAAAGCGAACGGTTCGCCTCTGAAGGATAACACAGGCGTGCTGCGGACTTGCTCCCTGCGTCCAGCCGGCATATACGGCCCTGGCGAGGAAAGGCACTTGCCTAGAATAGTTAGCTACATCGAGAGCGGCGTCTTCAGGTTCGTGTACGGTGATCCCGATAGCCTGGTGGAGTTCGTTCATGTGGATAATCTGGTGTCTGCGCACATCTTGGCCGCCGAGGCGCTGACTGAAGAGCGTCAGCGTCGCGCCGCCGGTCAGCCCTATTTCATTTCCGACGGAAGGCCTGTGAACAACTTCGAGTTTTTCAGGCCTCTGGTGGAGGGCCTGGGGCACTCGTTCCCCACGCTTCGCCTGCCCTTATCGCTCGTGTACTTCTTGGCGTTCCTGACCGAGATGCTCCACCGCGTCGTGGGGCGCATTTATAACTTTCAACCCCTGCTGACCCGCACCGAGGTCTACAAGACGGGCGTGACGCACTATTTCAGCGGGCGTAAAGCGCGAGAAGAGCTGGGATACGAGCCTAAACCGCATGACCTGGAAGACGTCGTGCAGTGGTTTCGAGGCAGAGGTCATGGGAAGAAGCGCGGCCGGTCGTCAATTAAGAAACTAATTTTAGACGTCGTTCTGGTGGTCGCGTTTGCAGCAGTGGCGCTCTCCTGCCTTCCGGTCGTGGGCCAGTGACGTTTGAGGATTTCAGTTTCAGTGCATTATtTTGCTTAACGGAGAGCAGCACCGAACAAAACTTGATCGTGCTGTCCGGCATGATGCGAGACGATCCGAAGAGCATCTTGGGTTTAAGTGGAGGCGAGAAAATCTGTCTGTACAAAGAGTCACAAGATCATCATCGTCACTTATTTACTTACAATTGATTAGTCacatagaaatataattttttttctttgctttgctttgattTGCATTTATGCCTTTTTGTAATTAGTACACTGCATACGTTTGATCAATTCATGCTTTCTGGGAATTGAACCCGTGACCTTGGCATTGGCTGGTGTCGTGTTAGACTTTTTGAGTTATCCTGAAAGATTTCTGTAACTTgaaattttctgtttattttcagctgTACGTAAATCTCTATCCCAGAGTTTAGAGTCTGTGACTggatgatttatatttaaaaaaa
>XM_043264449.1
CATCGTTGAAACTACGCCGACGGACATCCTCTCAGCGCGCGCCCACCTCGCCACGCCCCCACGGCGTCGCGCACGCCCACTACGCTCGTGGCCACGCCCCCTCGCCTGCCGCTCTATGATCATAATAACAGCAGCGACAGTTCATCTTCAGCCAATCAAAGCGAGGCATCGCTCACTCTTATCCAATGAGCACGCGCGACTGTGTAACCCCGCCCATTCACGCGTTTCCTAGGAAGTGCAGGTTACGCACACTTTGTGATCGATTCAAAGCGCGATCGCAGAGattcCGCTCTCCCTGCCTCTTTAACACAATGGAAGTCAACAGAACGGGCAGAACATACCTCGTAACCGGTGGAGGAGGTTATTTCGGATTCCGTCTCGCCTGTGCTCTCCTCAAAACCTCCTCGAGCGTCGTGCTGCTTGACGTGAGGCCGCCGAGCCAGGAGCTGCCGGAGGGCACCGTATTCGTCCGGGCCGATGTCCGCGACTACGCTCGGGTGGAAGAAGCGGTCCGCGGCGCGAGCTGCGTGTTCCACGTCGCCTCCTACGGGATGTCCGGACGCGAGCAGCTCGATCGAAAACTCATCGAGGAGGTGAACGTGCAGGGGACGGAGAACGTCCTCAGGGCCTGCGTGGCGCACGGCGTCCCCCGTTTGGTCTACACGAGCACGTATAACGTGGTGTTCGGGGGCCAGGAGATTAAGGGCGGCGACGAAAGCCTCCCTTACTTCCCCTTGCACCTGCACCCCGATCACTACTCCAGGACTAAGTCCGTAGCCGAGATGCGGGTGTTAAAAGCGAACGGTTCGCCTCTGAAGGATAACACAGGCGTGCTGCGGACTTGCTCCCTGCGTCCAGCCGGCATATACGGCCCTGGCGAGGAAAGGCACTTGCCTAGAATAGTTAGCTACATCGAGAGCGGCGTCTTCAGGTTCGTGTACGGTGATCCCGATAGCCTGGTGGAGTTCGTTCATGTGGATAATCTGGTGTCTGCGCACATCTTGGCCGCCGAGGCGCTGACTGAAGAGCGTCAGCGTCGCGCCGCCGGTCAGCCCTATTTCATTTCCGACGGAAGGCCTGTGAACAACTTCGAGTTTTTCAGGCCTCTGGTGGAGGGCCTGGGGCACTCGTTCCCCACGCTTCGCCTGCCCTTATCGCTCGTGTACTTCTTGGCGTTCCTGACCGAGATGCTCCACCGCGTCGTGGGGCGCATTTATAACTTTCAACCCCTGCTGACCCGCACCGAGGTCTACAAGACGGGCGTGACGCACTATTTCAGCGGGCGTAAAGCGCGAGAAGAGCTGGGATACGAGCCTAAACCGCATGACCTGGAAGACGTCGTGCAGTGGTTTCGAGGCAGAGGTCATGGGAAGAAGCGCGGCCGGTCGTCAATTAAGAAACTAATTTTAGACGTCGTTCTGGTGGTCGCGTTTGCAGCAGTGGCGCTCTCCTGCCTTCCGGTCGTGGGCCAGTGACGTTTGAGGATTTCAGTTTCAGTGCATTATtTTGCTTAACGGAGAGCAGCACCGAACAAAACTTGATCGTGCTGTCCGGCATGATGCGAGACGATCCGAAGAGCATCTTGGGTTTAAGTGGAGGCGAGAAAATCTGTCTGTACAAAGAGTCACAAGATCATCATCGTCACTTATTTACTTACAATTGATTAGTCacatagaaatataattttttttctttgctttgctttgattTGCATTTATGCCTTTTTGTAATTAGTACACTGCATACGTTTGATCAATTCATGCTTTCTGGGAATTGAACCCGTGACCTTGGCATTGGCTGGTGTCGTGTTAGACTTTTTGAGTTATCCTGAAAGATTTCTGTAACTTgaaattttctgtttattttcagctgTACGTAAATCTCTATCCCAGAGTTTAGAGTCTGTGACTggatgatttatatttaaaaaaa
>XM_043264450.1
ATAGGATGTTTTCCGTACAGattcCGCTCTCCCTGCCTCTTTAACACAATGGAAGTCAACAGAACGGGCAGAACATACCTCGTAACCGGTGGAGGAGGTTATTTCGGATTCCGTCTCGCCTGTGCTCTCCTCAAAACCTCCTCGAGCGTCGTGCTGCTTGACGTGAGGCCGCCGAGCCAGGAGCTGCCGGAGGGCACCGTATTCGTCCGGGCCGATGTCCGCGACTACGCTCGGGTGGAAGAAGCGGTCCGCGGCGCGAGCTGCGTGTTCCACGTCGCCTCCTACGGGATGTCCGGACGCGAGCAGCTCGATCGAAAACTCATCGAGGAGGTGAACGTGCAGGGGACGGAGAACGTCCTCAGGGCCTGCGTGGCGCACGGCGTCCCCCGTTTGGTCTACACGAGCACGTATAACGTGGTGTTCGGGGGCCAGGAGATTAAGGGCGGCGACGAAAGCCTCCCTTACTTCCCCTTGCACCTGCACCCCGATCACTACTCCAGGACTAAGTCCGTAGCCGAGATGCGGGTGTTAAAAGCGAACGGTTCGCCTCTGAAGGATAACACAGGCGTGCTGCGGACTTGCTCCCTGCGTCCAGCCGGCATATACGGCCCTGGCGAGGAAAGGCACTTGCCTAGAATAGTTAGCTACATCGAGAGCGGCGTCTTCAGGTTCGTGTACGGTGATCCCGATAGCCTGGTGGAGTTCGTTCATGTGGATAATCTGGTGTCTGCGCACATCTTGGCCGCCGAGGCGCTGACTGAAGAGCGTCAGCGTCGCGCCGCCGGTCAGCCCTATTTCATTTCCGACGGAAGGCCTGTGAACAACTTCGAGTTTTTCAGGCCTCTGGTGGAGGGCCTGGGGCACTCGTTCCCCACGCTTCGCCTGCCCTTATCGCTCGTGTACTTCTTGGCGTTCCTGACCGAGATGCTCCACCGCGTCGTGGGGCGCATTTATAACTTTCAACCCCTGCTGACCCGCACCGAGGTCTACAAGACGGGCGTGACGCACTATTTCAGCGGGCGTAAAGCGCGAGAAGAGCTGGGATACGAGCCTAAACCGCATGACCTGGAAGACGTCGTGCAGTGGTTTCGAGGCAGAGGTCATGGGAAGAAGCGCGGCCGGTCGTCAATTAAGAAACTAATTTTAGACGTCGTTCTGGTGGTCGCGTTTGCAGCAGTGGCGCTCTCCTGCCTTCCGGTCGTGGGCCAGTGACGTTTGAGGATTTCAGTTTCAGTGCATTATtTTGCTTAACGGAGAGCAGCACCGAACAAAACTTGATCGTGCTGTCCGGCATGATGCGAGACGATCCGAAGAGCATCTTGGGTTTAAGTGGAGGCGAGAAAATCTGTCTGTACAAAGAGTCACAAGATCATCATCGTCACTTATTTACTTACAATTGATTAGTCacatagaaatataattttttttctttgctttgctttgattTGCATTTATGCCTTTTTGTAATTAGTACACTGCATACGTTTGATCAATTCATGCTTTCTGGGAATTGAACCCGTGACCTTGGCATTGGCTGGTGTCGTGTTAGACTTTTTGAGTTATCCTGAAAGATTTCTGTAACTTgaaattttctgtttattttcagctgTACGTAAATCTCTATCCCAGAGTTTAGAGTCTGTGACTggatgatttatatttaaaaaaa
>XR_006253166.1
TCGCCACGCCCCCACGGCGTCGCGCACGCCCACTACGCTCGTGGCCACGCCCCCTCGCCTGCCGCTCTATGATCATAATAACAGCAGCGACGTACGTTTTTTGCCGACAGTTCATCTTCAGCCAATCAAAGCGAGGCATCGCTCACTCTTATCCAATGAGCACGCGCGACTGTGTAACCCCGCCCATTCACGCGTTTCCTAGGAAGTGCAGGTTACGCACACTTTGTGATCGATTCAAAGCGCGATCGCAGAGattcCGCTCTCCCTGCCTCTTTAACACAATGGAAGTCAACAGAACGGGCAGAACATACCTCGTAACCGGTGGAGGAGGTTATTTCGGATTCCGTCTCGCCTGTGCTCTCCTCAAAACCTCCTCGAGCGTCGTGCTGCTTGACGTGAGGCCGCCGAGCCAGGAGCTGCCGGAGGGCACCGTATTCGTCCGGGCCGATGTCCGCGACTACGCTCGGGTGGAAGAAGCGGTCCGCGGCGCGAGCTGCGTGTTCCACGTCGCCTCCTACGGGATGTCCGGACGCGAGCAGCTCGATCGAAAACTCATCGAGGAGGTGAACGTGCAGGGGACGGAGAACGTCCTCAGGGCCTGCGTGGCGCACGGCGTCCCCCGTTTGGTCTACACGAGCACGTATAACGTGGTGTTCGGGGGCCAGGAGATTAAGGGCGGCGACGAAAGCCTCCCTTACTTCCCCTTGCACCTGCACCCCGATCACTACTCCAGGACTAAGTCCGTAGCCGAGATGCGGGTGTTAAAAGCGAACGGTTCGCCTCTGAAGGATAACACAGGCGTGCTGCGGACTTGCTCCCTGCGTCCAGCCGGCATATACGGCCCTGGCGAGGAAAGGCACTTGCCTAGAATAGTTAGCTACATCGAGAGCGGCGTCTTCAGGTTCGTGTACGGTGATCCCGATAGCCTGGTGGAGTTCGTTCATGTGGATAATCTGGTGTCTGCGCACATCTTGGCCGCCGAGGCGCTGACTGAAGAGCGTCAGCGTCGCGCCGCCGGTCAGCCCTATTTCATTTCCGACGGAAGGCCTGTGAACAACTTCGAGTTTTTCAGGCCTCTGGTGGAGGGCCTGGGGCACTCGTTCCCCACGCTTCGCCTGCCCTTATCGCTCGTGTACTTCTTGGCGTTCCTGACCGAGATGCTCCACCGCGTCGTGGGGCGCATTTATAACTTTCAACCCCTGCTGACCCGCACCGAGGTCTACAAGACGGGCGTGACGCACTATTTCAGCGGGCGTAAAGCGCGAGAAGAGCTGGGATACGAGCCTAAACCGCATGACCTGGAAGACGTCGTGCAGTGGTTTCGAGGCAGAGGTCATGGGAAGAAGCGCGGCCGGTCGTCAATTAAGAAACTAATTTTAGACGTCGTTCTGGTGGTCGCGTTTGCAGCAGTGGCGCTCTCCTGCCTTCCGGTCGTGGGCCAGTGACGTTTGAGGATTTCAGTTTCAGTGCATTATGTGAGGTTTATACTGATTTGTTCGCTTTTAAAAGACGTGCGATCGTGTTAATGCATGTGAGGGATGCATTGCTGTGAAATGCCtTTGCTTAACGGAGAGCAGCACCGAACAAAACTTGATCGTGCTGTCCGGCATGATGCGAGACGATCCGAAGAGCATCTTGGGTTTAAGTGGAGGCGAGAAAATCTGTCTGTACAAAGAGTCACAAGATCATCATCGTCACTTATTTACTTACAATTGATTAGTCacatagaaatataattttttttctttgctttgctttgattTGCATTTATGCCTTTTTGTAATTAGTACACTGCATACGTTTGATCAATTCATGCTTTCTGGGAATTGAACCCGTGACCTTGGCATTGGCTGGTGTCGTGTTAGACTTTTTGAGTTATCCTGAAAGATTTCTGTAACTTgaaattttctgtttattttcagctgTACGTAAATCTCTATCCCAGAGTTTAGAGTCTGTGACTggatgatttatatttaaaaaaaaaaa

Function

symbol description
sdr42e1 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human SDR42E1 (short chain dehydrogenase/reductase family 42E, member 1).

NR:

description
short-chain dehydrogenase/reductase family 42E member 1

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264448.1 False 1902 mRNA 0.54 5 17883665 17887207
XM_043264449.1 False 1932 mRNA 0.54 5 17883618 17887207
XM_043264450.1 False 1669 mRNA 0.53 4 17884361 17887207
XR_006253166.1 True 1989 transcript 0.53 5 17883665 17887211

Neighbor

gene id symbol gene type direction distance location
pigb pigb,LOC107600388,LOC107708293 coding upstream 106641 17769658 ~ 17776977 (+)
LOC122363047 unc13c coding upstream 190384 17555210 ~ 17693234 (+)
LOC122362636 LOC107554234,LOC107665407,LOC107713070 coding upstream 383101 17498529 ~ 17500517 (+)
lrch3 lrch3,LOC107735844 coding upstream 401438 17457090 ~ 17482180 (+)
LOC122322924 NA coding upstream 443553 17437151 ~ 17440065 (+)
LOC122323000 wtip,LOC107594378,LOC107600421,LOC107734993,LOC107712576,LOC107659186,LOC107662496 coding downstream 756 17887967 ~ 17917268 (+)
LOC122362789 kiaa0355,LOC107594396,LOC107734949,LOC107668468,LOC107600920,LOC107712582 coding downstream 49819 17937030 ~ 17969461 (+)
LOC122362666 LOC107712581,LOC107668485,LOC107734866,LOC107659171 coding downstream 96267 17983478 ~ 18070581 (+)
pepd pepd coding downstream 390153 18277364 ~ 18334482 (+)
ugt5f1 LOC107709391 coding downstream 451932 18339143 ~ 18343857 (+)
G127243 nedd4,LOC107735005,LOC107712575,LOC107659054 non-coding upstream 25469 17857012 ~ 17858149 (+)
G127242 NA non-coding upstream 27807 17854650 ~ 17855811 (+)
G127240 NA non-coding upstream 31905 17818738 ~ 17851713 (+)
G127228 NA non-coding upstream 99915 17782598 ~ 17783703 (+)
G127208 NA non-coding upstream 132367 17750352 ~ 17751251 (+)
G127263 NA non-coding downstream 85339 17972550 ~ 17974502 (+)
G127268 NA non-coding downstream 90464 17977675 ~ 17981341 (+)
G127413 NA non-coding downstream 464529 18351740 ~ 18352103 (+)
G127431 NA non-coding downstream 598646 18485857 ~ 18487271 (+)
G127434 NA non-coding downstream 604786 18491997 ~ 18518461 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other upstream 69196 17808601 ~ 17814422 (+)
serp1 NA other upstream 427961 17454154 ~ 17455657 (+)
G127098 NA other upstream 472025 17410685 ~ 17411593 (+)
LOC122322904 NA other upstream 574460 17303769 ~ 17309158 (+)
LOC122362575 NA other upstream 712283 17129922 ~ 17171335 (+)
G127258 NA other downstream 35717 17922928 ~ 17928165 (+)
G127292 NA other downstream 251324 18138535 ~ 18140253 (+)
G127456 rps3 other downstream 672752 18559963 ~ 18563152 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other downstream 759151 18646362 ~ 18652164 (+)
G127500 NA other downstream 843479 18730690 ~ 18841535 (+)

Expression


Co-expression Network