LOC122362844 (fsd2,LOC107726333)


Basic Information

Item Value
gene id LOC122362844
gene name fsd2,LOC107726333
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16362245 ~ 16368810 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264478.1
AGTTGTTGGTTTCGTTCAGTTCAGGTTTTTTTCAGCTCCTGCTGATATTCGATCCGTCGGTCTATATTTATCTGCTCGGAGCTCAGAGCGCATGCGCAGAAACTCACTCTACACCGAAACAGAACACACCAGAGCCGGCAGTCGCTGAAGGACTGTGTTTGTGTCGGGGGTCTGCTGCAGGCGTGGGCATGGATGTGTATGAGGTCAGAGGTCGCCTGGACGTGATCACAGAGGAGCTGACGGCgagtgaggaggaggaggtggctGATGAAGAGGCGTTTGTGATGGTGCAGGACTCTACTGATGTGGCCACACTGAAGGTGAGTCGCACATTTGACGAGTGTGTGACCCGAGCGTCTGAGGTGTGTGACCCATGCTGTGCTTCCCAGGAGCAGCTGTCCAGAAGCAGGAGCAAACTGAGCCAGAAGATCATGGAGATGGAGAACTTCGCCAGTAACCTGGAGGAGATCTTcatcactgtggaggAGAACTTCGGCCGGCAGGAGCAGAATCTGGAGCAGCACTATAACGAAGTTCTGCAGACGCTGTCGCAGAAGAACGAGGCACGAGCCGCGGCGCTGGATGAGCAGAAGAACAGCAAGCTGGAGCATTTGTACGGTCAGCTGCTGCGATGCGGTCAAACACTGGACACAGCCAAAGAGCTGATCGAGAGAGCACAGGAGCTCCACCGCAGACCAGACAAACATGCCTTCCTGCAGGCTGTCATGCCAGTTATGAAGAGAGTCGAGCAGTTTGCCAGAGAGGAAGTGGATCTAAAGCTGGGAGTGTCTCTGGACTTCGATGTCCCGAAGATGGATCTGTCCCACGTCAGACAGATGATGGACTCCATTAATGTACTTCCAGctccaTCGGCTCCGGTCATGAATCCTCAGATCGCTAACTCTGCCACAGACACATCACTGCACGTGTGCTGGAGTCTGTTCTCGGACGACACTGTGGAGTTTTACGAGCTTTCCTGGCGTCTGATCTCTGATGACTGCACTATGGAGATGCAGCAGGAAGtggCTCAGCTGAAGGTGAAGGAAACTCACTGCACCGTGTCTGATCTGCTTCCTAACGCTCAGTATGAACTTTGGGTGACAGCCACCAACACCACAGGCATCAGCCCGGCCAGCGAGAGGGCCGTCTACATGACGGTTCCCTCTCCTCCGGTCCTTAAGCCACGGCAGTGTGTGAGCAGCCTGGACTCGGCGCTGATCCGCTGGGACTCTGGAAACACCGATCCAGTGGAGTCGTACACGCTGGAGCTTCACCAGACACATGCAGATGGCTGCTCTGTCACCGAGTCCATCGTGGCGATCCCATCCTGCGAGTGTCTGCTGCAGCTTCAGCCCCGGAAGAACTACATCATCCACATCAGAGCCGTGAACATCGGGGGCCCGAGTGACCGGAGCCAGCCCATCACTGTCTCCACCATAGGTACATTCTTCCACCTGCTGGAAGACACCGCACATCCGAGCCTGTCTCTGTCAGCTGATGGCCTCACTATGTTCTATCTGGATGAAGATCTTCCCATCAGTCACATGACCTTCAGCGACAACACCTTCAACAGGTGCGTGGCGGTTCTGGGTGACCTAGTGCCCGTCAGAGCCCAGTACTACTGGGAGATCGAGGTGGACGAGAGCACAGAGTTTCGTGTGGGTGTAGCGTACGAGGACACACAGCGCAACTCATACCTGGGCGGGAACAACACGTCCTGGTGCATGAGACACATCCTCACGCCGTCCAGGCATAAATACGAGTTCCTGCACAACGGCTGGACGCCGGACATCCGCATCACCGTGCAGCCGCTGCGGATCGGTGTGTTTCTGGATTATTCCCGTGGGATCCTCTCCTTCTTCAACGCCGCGCTACAGCAGCACCTCTACACCTTCAGCGCTCAGTTCCTGCACTACGTCCAGCCGTGTTTTGCTCTGGATAATCCCGGAGCACTGATGCTCCACACCGGACTGACCACGCCGTCACACATCACTCAGGCCTGAGCTGAATAAACCAGACACCAGCATCTGTGTGgacttgctttcttttattattcCATAGGAACAGTTACACAGCGGTCAGTAAAACATGTGATCAAATAAAAGTGTGCTGCTGCA
>XM_043264480.1
GGAACAGACTGAAGACCGAATCTGTGATTGACAGGCCTCGTTTAACCTTAATATCGTTAACTGTAAGCGCTACAGTAGATGTATTTACAGTAAAGCAGTTGTTGGTTTCGTTCAGTTCAGGTTTTTTTCAGCTCCTGCTGATATTCGATCCGTCGGTCTATATTTATCTGCTCGGAGCTCAGAGCGCATGCGCAGAAACTCACTCTACACCGAAACAGAACACACCAGAGCCGGCAGGCGTGGGCATGGATGTGTATGAGGTCAGAGGTCGCCTGGACGTGATCACAGAGGAGCTGACGGCgagtgaggaggaggaggtggctGATGAAGAGGCGTTTGTGATGGTGCAGGACTCTACTGATGTGGCCACACTGAAGGTGAGTCGCACATTTGACGAGTGTGTGACCCGAGCGTCTGAGGTGTGTGACCCATGCTGTGCTTCCCAGGAGCAGCTGTCCAGAAGCAGGAGCAAACTGAGCCAGAAGATCATGGAGATGGAGAACTTCGCCAGTAACCTGGAGGAGATCTTcatcactgtggaggAGAACTTCGGCCGGCAGGAGCAGAATCTGGAGCAGCACTATAACGAAGTTCTGCAGACGCTGTCGCAGAAGAACGAGGCACGAGCCGCGGCGCTGGATGAGCAGAAGAACAGCAAGCTGGAGCATTTGTACGGTCAGCTGCTGCGATGCGGTCAAACACTGGACACAGCCAAAGAGCTGATCGAGAGAGCACAGGAGCTCCACCGCAGACCAGACAAACATGCCTTCCTGCAGGCTGTCATGCCAGTTATGAAGAGAGTCGAGCAGTTTGCCAGAGAGGAAGTGGATCTAAAGCTGGGAGTGTCTCTGGACTTCGATGTCCCGAAGATGGATCTGTCCCACGTCAGACAGATGATGGACTCCATTAATGTACTTCCAGctccaTCGGCTCCGGTCATGAATCCTCAGATCGCTAACTCTGCCACAGACACATCACTGCACGTGTGCTGGAGTCTGTTCTCGGACGACACTGTGGAGTTTTACGAGCTTTCCTGGCGTCTGATCTCTGATGACTGCACTATGGAGATGCAGCAGGAAGtggCTCAGCTGAAGGTGAAGGAAACTCACTGCACCGTGTCTGATCTGCTTCCTAACGCTCAGTATGAACTTTGGGTGACAGCCACCAACACCACAGGCATCAGCCCGGCCAGCGAGAGGGCCGTCTACATGACGGTTCCCTCTCCTCCGGTCCTTAAGCCACGGCAGTGTGTGAGCAGCCTGGACTCGGCGCTGATCCGCTGGGACTCTGGAAACACCGATCCAGTGGAGTCGTACACGCTGGAGCTTCACCAGACACATGCAGATGGCTGCTCTGTCACCGAGTCCATCGTGGCGATCCCATCCTGCGAGTGTCTGCTGCAGCTTCAGCCCCGGAAGAACTACATCATCCACATCAGAGCCGTGAACATCGGGGGCCCGAGTGACCGGAGCCAGCCCATCACTGTCTCCACCATAGGTACATTCTTCCACCTGCTGGAAGACACCGCACATCCGAGCCTGTCTCTGTCAGCTGATGGCCTCACTATGTTCTATCTGGATGAAGATCTTCCCATCAGTCACATGACCTTCAGCGACAACACCTTCAACAGGTGCGTGGCGGTTCTGGGTGACCTAGTGCCCGTCAGAGCCCAGTACTACTGGGAGATCGAGGTGGACGAGAGCACAGAGTTTCGTGTGGGTGTAGCGTACGAGGACACACAGCGCAACTCATACCTGGGCGGGAACAACACGTCCTGGTGCATGAGACACATCCTCACGCCGTCCAGGCATAAATACGAGTTCCTGCACAACGGCTGGACGCCGGACATCCGCATCACCGTGCAGCCGCTGCGGATCGGTGTGTTTCTGGATTATTCCCGTGGGATCCTCTCCTTCTTCAACGCCGCGCTACAGCAGCACCTCTACACCTTCAGCGCTCAGTTCCTGCACTACGTCCAGCCGTGTTTTGCTCTGGATAATCCCGGAGCACTGATGCTCCACACCGGACTGACCACGCCGTCACACATCACTCAGGCCTGAGCTGAATAAACCAGACACCAGCATCTGTGTGgacttgctttcttttattattcCATAGGAACAGTTACACAGCGGTCAGTAAAACATGTGATCAAATAAAAGTGTGCTGCTGCA
>XM_043264481.1
TTGTTGGTTTCGTTCAGTTCAGGTTTTTTTCAGCTCCTGCTGATATTCGATCCGTCGGTCTATATTTATCTGCTCGGAGCTCAGAGCGCATGCGCAGAAACTCACTCTACACCGAAACAGAACACACCAGAGCCGGCAGTCGCTGAAGGACTGTGTTTGTGTCGGGGGTCTGCTGCAGGCGTGGGCATGGATGTGTATGAGGTCAGAGGTCGCCTGGACGTGATCACAGAGGAGCTGACGGCgagtgaggaggaggaggtggctGATGAAGAGGCGTTTGTGATGGTGCAGGACTCTACTGATGTGGCCACACTGAAGGAGCAGCTGTCCAGAAGCAGGAGCAAACTGAGCCAGAAGATCATGGAGATGGAGAACTTCGCCAGTAACCTGGAGGAGATCTTcatcactgtggaggAGAACTTCGGCCGGCAGGAGCAGAATCTGGAGCAGCACTATAACGAAGTTCTGCAGACGCTGTCGCAGAAGAACGAGGCACGAGCCGCGGCGCTGGATGAGCAGAAGAACAGCAAGCTGGAGCATTTGTACGGTCAGCTGCTGCGATGCGGTCAAACACTGGACACAGCCAAAGAGCTGATCGAGAGAGCACAGGAGCTCCACCGCAGACCAGACAAACATGCCTTCCTGCAGGCTGTCATGCCAGTTATGAAGAGAGTCGAGCAGTTTGCCAGAGAGGAAGTGGATCTAAAGCTGGGAGTGTCTCTGGACTTCGATGTCCCGAAGATGGATCTGTCCCACGTCAGACAGATGATGGACTCCATTAATGTACTTCCAGctccaTCGGCTCCGGTCATGAATCCTCAGATCGCTAACTCTGCCACAGACACATCACTGCACGTGTGCTGGAGTCTGTTCTCGGACGACACTGTGGAGTTTTACGAGCTTTCCTGGCGTCTGATCTCTGATGACTGCACTATGGAGATGCAGCAGGAAGtggCTCAGCTGAAGGTGAAGGAAACTCACTGCACCGTGTCTGATCTGCTTCCTAACGCTCAGTATGAACTTTGGGTGACAGCCACCAACACCACAGGCATCAGCCCGGCCAGCGAGAGGGCCGTCTACATGACGGTTCCCTCTCCTCCGGTCCTTAAGCCACGGCAGTGTGTGAGCAGCCTGGACTCGGCGCTGATCCGCTGGGACTCTGGAAACACCGATCCAGTGGAGTCGTACACGCTGGAGCTTCACCAGACACATGCAGATGGCTGCTCTGTCACCGAGTCCATCGTGGCGATCCCATCCTGCGAGTGTCTGCTGCAGCTTCAGCCCCGGAAGAACTACATCATCCACATCAGAGCCGTGAACATCGGGGGCCCGAGTGACCGGAGCCAGCCCATCACTGTCTCCACCATAGGTACATTCTTCCACCTGCTGGAAGACACCGCACATCCGAGCCTGTCTCTGTCAGCTGATGGCCTCACTATGTTCTATCTGGATGAAGATCTTCCCATCAGTCACATGACCTTCAGCGACAACACCTTCAACAGGTGCGTGGCGGTTCTGGGTGACCTAGTGCCCGTCAGAGCCCAGTACTACTGGGAGATCGAGGTGGACGAGAGCACAGAGTTTCGTGTGGGTGTAGCGTACGAGGACACACAGCGCAACTCATACCTGGGCGGGAACAACACGTCCTGGTGCATGAGACACATCCTCACGCCGTCCAGGCATAAATACGAGTTCCTGCACAACGGCTGGACGCCGGACATCCGCATCACCGTGCAGCCGCTGCGGATCGGTGTGTTTCTGGATTATTCCCGTGGGATCCTCTCCTTCTTCAACGCCGCGCTACAGCAGCACCTCTACACCTTCAGCGCTCAGTTCCTGCACTACGTCCAGCCGTGTTTTGCTCTGGATAATCCCGGAGCACTGATGCTCCACACCGGACTGACCACGCCGTCACACATCACTCAGGCCTGAGCTGAATAAACCAGACACCAGCATCTGTGTGgacttgctttcttttattattcCATAGGAACAGTTACACAGCGGTCAGTAAAACATGTGATCAAATAAAAGTGTGCTGCTGCA
>XM_043264482.1
GTTGTTGGTTTCGTTCAGTTCAGGTTTTTTTCAGCTCCTGCTGATATTCGATCCGTCGGTCTATATTTATCTGCTCGGAGCTCAGAGCGCATGCGCAGAAACTCACTCTACACCGAAACAGAACACACCAGAGCCGGCAGTCGCTGAAGGACTGTGTTTGTGTCGGGGGTCTGCTGCAGGCGTGGGCATGGATGTGTATGAGGTCAGAGGTCGCCTGGACGTGATCACAGAGGAGCTGACGGCgagtgaggaggaggaggtggctGATGAAGAGGCGTTTGTGATGGTGCAGGACTCTACTGATGTGGCCACACTGAAGCTGTCCAGAAGCAGGAGCAAACTGAGCCAGAAGATCATGGAGATGGAGAACTTCGCCAGTAACCTGGAGGAGATCTTcatcactgtggaggAGAACTTCGGCCGGCAGGAGCAGAATCTGGAGCAGCACTATAACGAAGTTCTGCAGACGCTGTCGCAGAAGAACGAGGCACGAGCCGCGGCGCTGGATGAGCAGAAGAACAGCAAGCTGGAGCATTTGTACGGTCAGCTGCTGCGATGCGGTCAAACACTGGACACAGCCAAAGAGCTGATCGAGAGAGCACAGGAGCTCCACCGCAGACCAGACAAACATGCCTTCCTGCAGGCTGTCATGCCAGTTATGAAGAGAGTCGAGCAGTTTGCCAGAGAGGAAGTGGATCTAAAGCTGGGAGTGTCTCTGGACTTCGATGTCCCGAAGATGGATCTGTCCCACGTCAGACAGATGATGGACTCCATTAATGTACTTCCAGctccaTCGGCTCCGGTCATGAATCCTCAGATCGCTAACTCTGCCACAGACACATCACTGCACGTGTGCTGGAGTCTGTTCTCGGACGACACTGTGGAGTTTTACGAGCTTTCCTGGCGTCTGATCTCTGATGACTGCACTATGGAGATGCAGCAGGAAGtggCTCAGCTGAAGGTGAAGGAAACTCACTGCACCGTGTCTGATCTGCTTCCTAACGCTCAGTATGAACTTTGGGTGACAGCCACCAACACCACAGGCATCAGCCCGGCCAGCGAGAGGGCCGTCTACATGACGGTTCCCTCTCCTCCGGTCCTTAAGCCACGGCAGTGTGTGAGCAGCCTGGACTCGGCGCTGATCCGCTGGGACTCTGGAAACACCGATCCAGTGGAGTCGTACACGCTGGAGCTTCACCAGACACATGCAGATGGCTGCTCTGTCACCGAGTCCATCGTGGCGATCCCATCCTGCGAGTGTCTGCTGCAGCTTCAGCCCCGGAAGAACTACATCATCCACATCAGAGCCGTGAACATCGGGGGCCCGAGTGACCGGAGCCAGCCCATCACTGTCTCCACCATAGGTACATTCTTCCACCTGCTGGAAGACACCGCACATCCGAGCCTGTCTCTGTCAGCTGATGGCCTCACTATGTTCTATCTGGATGAAGATCTTCCCATCAGTCACATGACCTTCAGCGACAACACCTTCAACAGGTGCGTGGCGGTTCTGGGTGACCTAGTGCCCGTCAGAGCCCAGTACTACTGGGAGATCGAGGTGGACGAGAGCACAGAGTTTCGTGTGGGTGTAGCGTACGAGGACACACAGCGCAACTCATACCTGGGCGGGAACAACACGTCCTGGTGCATGAGACACATCCTCACGCCGTCCAGGCATAAATACGAGTTCCTGCACAACGGCTGGACGCCGGACATCCGCATCACCGTGCAGCCGCTGCGGATCGGTGTGTTTCTGGATTATTCCCGTGGGATCCTCTCCTTCTTCAACGCCGCGCTACAGCAGCACCTCTACACCTTCAGCGCTCAGTTCCTGCACTACGTCCAGCCGTGTTTTGCTCTGGATAATCCCGGAGCACTGATGCTCCACACCGGACTGACCACGCCGTCACACATCACTCAGGCCTGAGCTGAATAAACCAGACACCAGCATCTGTGTGgacttgctttcttttattattcCATAGGAACAGTTACACAGCGGTCAGTAAAACATGTGATCAAATAAAAGTGTGCTGCTGCA

Function

symbol description
fsd2 Predicted to be located in nucleus; perinuclear region of cytoplasm; and sarcoplasmic reticulum.

NR:

description
PREDICTED: fibronectin type III and SPRY domain-containing protein 2 isoform X1

GO: NA

KEGG:

id description
K24490 FSD2; fibronectin type III and SPRY domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264478.1 False 2117 mRNA 0.55 12 16362341 16368810
XM_043264480.1 True 2174 mRNA 0.54 12 16362245 16368810
XM_043264481.1 False 2046 mRNA 0.55 13 16362343 16368810
XM_043264482.1 False 2041 mRNA 0.55 13 16362342 16368810

Neighbor

gene id symbol gene type direction distance location
homer2 homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443 coding upstream 13340 16338045 ~ 16348905 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding upstream 27785 16329709 ~ 16334460 (+)
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 243483 16115991 ~ 16118762 (+)
LOC122362747 kifc3,LOC107670565 coding upstream 246401 16090090 ~ 16115844 (+)
LOC122362951 cngb1a coding upstream 276831 16075471 ~ 16085414 (+)
zgc:158482 LOC107727401,LOC107703947,LOC107569985 coding downstream 42555 16411365 ~ 16419019 (+)
slc27a2a NA coding downstream 51384 16420194 ~ 16426174 (+)
usp8 usp8,LOC107595392,LOC107715249,LOC107665382 coding downstream 73670 16442480 ~ 16452118 (+)
mibp2 mibp2,LOC107713061,LOC107690135,LOC107710817,LOC107663471,LOC107595359,LOC107595360,LOC107097782,LOC107381735 coding downstream 133124 16501934 ~ 16504465 (+)
slc30a4 slc30a4 coding downstream 145360 16514170 ~ 16522683 (+)
G126722 whamm,LOC107595364 non-coding upstream 599 16355231 ~ 16361646 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding upstream 150662 16208584 ~ 16211583 (+)
LOC122362955 NA non-coding upstream 303271 16058534 ~ 16058974 (+)
G126626 NA non-coding upstream 358427 15999452 ~ 16003818 (+)
G126605 NA non-coding upstream 533892 15825427 ~ 15828353 (+)
LOC122362848 NA non-coding downstream 7628 16376438 ~ 16378666 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding downstream 36645 16405455 ~ 16406624 (+)
G126723 NA non-coding downstream 85187 16453997 ~ 16494634 (+)
G126755 NA non-coding downstream 93982 16462792 ~ 16463512 (+)
G126726 NA non-coding downstream 122723 16491533 ~ 16493553 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 90978 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 306618 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 408592 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1314352 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1452088 14906616 ~ 14910157 (+)
G126820 NA other downstream 384899 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 705384 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 761112 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 934959 17303769 ~ 17309158 (+)
G127098 NA other downstream 1041875 17410685 ~ 17411593 (+)

Expression


Co-expression Network