homer2 (homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443)


Basic Information

Item Value
gene id homer2
gene name homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16338045 ~ 16348905 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264486.1
agagagagagcgagagagggagtgtgtgtgtgtgtgtgtgtgggctgaTCCGCGGCGCGTCGCTGCTGAAGCGCGTCTGACCGTCTCTCAGTTTGGATTCATGATCATCGGCTGCGGACTGAACTCCGCACGGACGCGTTTCACTGTTCCAGCCtggaaatattaataaagatcCGCCAGCTCGAGCTGAAGTTAGTTTGTCGCGGGATATCAGATTTCTGTAGGAAATATTCTGCGCTGGAACTGATGCGGGAGATTTCTGAGTCTCTGTAACTAAAGACGCTTCACGGATCCGCCAGAGAGCAGCGCGATGGGgGAGCAGCCGATCTTCACCACCAGAGCTCATGTCTTCCAGATTGATCCCACCACTAAGAAGAACTGGGTTCCCGCCAGTAAACAGGCCGTTACCGTCTCGTACTTCTATGACAGCACACGCAACAGCTACCGCATCATCAGTGTGGacgggtcaaagGTGATCATTAACAGCACAATCACCCCCAATATGAACTTCACTAAAACATCGCAGAAGTTTGGCCAGTGGGCTGACAGTCGTGCAAACACAGTGTTTGGACTCGGCTTCGCCTCTGAACAGCAGCTGTCAAAGtttgctgAGAAGTTTCAGGAAGTCAAAGAAGCTGCGAAACTGGCCAGAGAAAAATCTCAGGAGAAGATGGAGACGTCCAGCGATCAGTCGCAGGAATCTGGCCGTGAAACTCCATCAGGCAATCAAGCATCCAGCATCAATGGAACAGACGATGAGAAAATCTCACACGTGCCGGACACCACAGCGCTGAAGAGTGAGAACGACCGGCTGAAGTCTGTAGCGGAGCAGAGtaaGAAGCTGGAGACGGAGCTGCAGGCTCTGAAGGACAGCAACGCTCGACTGATGGACACACTGCAGGAGGCCAACAGCAGCGCAGAGAGCTGGAAGAGCAAAGTGACGCAGAGCCAGGACGAGAACAACCAGCTGAGGAACAAGatctcGGAGCTGGAGGTTCAGTGCAAGGAGGTAAAtctggagaaagaaagaaacactcAGCTGAGTCTCAGAATTCAAGAACTGGAAGCAGATCTGCAGGAAAAAGAACAGGAGCTGGAGGATCTGCGCAAACAGGCAGAAACCATCCCACAGCTTATGGCCAAATGTGAAAGTGTCTCGGTCAAACTACAGGCTGCAGAAACGGCCAACAGGGACCTGAGTGAGAAGATGACACTCCTGCAGAGCGAGATCGACGACAGCGAGCAGAAACAGAAGAACATGAAGAGCGAGCTCAAGAAGTTCATGGACGTTCTGGACGGGAAGATTGATGAGCTCCATGAAGTTCGTCAGGGCATTTCTAAACTGGGCGTCGataactgaacacacacacacacacacacacacacccctctctctcacactcatactcacatacactctctctctctctctctctctctctctctctctctctctctctctttctttcactgGGCTCCTGtcccgtgtgtgtttgtgatcttTTGACTGATGGTTAAGGGCTACTGATGGTCAGCGAggagcttctctctctctctctctcacacacacacacacacacacacacacacacagactgaaagGTAAATTTAACCGCTGCAGATCTCAGGGCCGTTCAGATTGCTGATATGCACAAACACAGGTGAACTGCAGAATCACTAAGTGCCTGATGGTGGCGCTCTCTCTCCGCCAGCCCTCATAAACTCTTCTGACAATCGTCCTGTTTAACGCAAGGCGTCGAGCGGCTCCTCATGCAATACCCGCCTCAGGCTGCAGGACGcacttctcttcttcttcttcttcttcttctgcttcttctgttggtttgttttgtgtttttgagagTCACATTCAGATTATTCTTATTCTGATTGCTGAAAATATGAGCCAAATATCTGCTGTGATGAAGGCAGTTTGCTTGTTCGGTGCAGATGTGTGTGTCGTGCTCAGCAGTGTTTGTGATGTGCTCCTCCgcttgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgacgtttGGTAGATGGGATAATTTATACGTGTGCTTTTTTTAGAATAATCTCTGCCTTTCCTGAGTCTGTGATCAGAGTGCTTGAGCTTCCAAACTCTCTCCTCAGTTcctttcagttgttgttttcttgATGCTGTTTGAATGCTGTGGATGGTGTATTATGTGTTTAATGTGGGCAATTGTCTTGAACAccctctaaaacacacacacacacacacaccttactgAAACTTGAgccttttttccctctttctggaaagaaaaacttttgttgatcaaaattgtaaaataaaaaattgtggaAATCTAGTTTCTGAAGGAGA
>XM_043264487.1
tcttctcattttttgGTGTCGTTCACTTAAACCAAAAGTATTTTGcatggtgtgtgtttttcactgaccagcagttttttgttttatggctggttgtttgtttaatgaataatgTAGAGCAGTTGGATCATTTACAGCCCTGGATCCACCAAACGTTTGGGATTCTGCTGAAATgGAGCAGCCGATCTTCACCACCAGAGCTCATGTCTTCCAGATTGATCCCACCACTAAGAAGAACTGGGTTCCCGCCAGTAAACAGGCCGTTACCGTCTCGTACTTCTATGACAGCACACGCAACAGCTACCGCATCATCAGTGTGGacgggtcaaagGTGATCATTAACAGCACAATCACCCCCAATATGAACTTCACTAAAACATCGCAGAAGTTTGGCCAGTGGGCTGACAGTCGTGCAAACACAGTGTTTGGACTCGGCTTCGCCTCTGAACAGCAGCTGTCAAAGtttgctgAGAAGTTTCAGGAAGTCAAAGAAGCTGCGAAACTGGCCAGAGAAAAATCTCAGGAGAAGATGGAGACGTCCAGCGATCAGTCGCAGGAATCTGGCCGTGAAACTCCATCAGGCAATCAAGCATCCAGCATCAATGGAACAGACGATGAGAAAATCTCACACGTGCCGGACACCACAGCGCTGAAGAGTGAGAACGACCGGCTGAAGTCTGTAGCGGAGCAGAGtaaGAAGCTGGAGACGGAGCTGCAGGCTCTGAAGGACAGCAACGCTCGACTGATGGACACACTGCAGGAGGCCAACAGCAGCGCAGAGAGCTGGAAGAGCAAAGTGACGCAGAGCCAGGACGAGAACAACCAGCTGAGGAACAAGatctcGGAGCTGGAGGTTCAGTGCAAGGAGGTAAAtctggagaaagaaagaaacactcAGCTGAGTCTCAGAATTCAAGAACTGGAAGCAGATCTGCAGGAAAAAGAACAGGAGCTGGAGGATCTGCGCAAACAGGCAGAAACCATCCCACAGCTTATGGCCAAATGTGAAAGTGTCTCGGTCAAACTACAGGCTGCAGAAACGGCCAACAGGGACCTGAGTGAGAAGATGACACTCCTGCAGAGCGAGATCGACGACAGCGAGCAGAAACAGAAGAACATGAAGAGCGAGCTCAAGAAGTTCATGGACGTTCTGGACGGGAAGATTGATGAGCTCCATGAAGTTCGTCAGGGCATTTCTAAACTGGGCGTCGataactgaacacacacacacacacacacacacacccctctctctcacactcatactcacatacactctctctctctctctctctctctctctctctctctctctctctctttctttcactgGGCTCCTGtcccgtgtgtgtttgtgatcttTTGACTGATGGTTAAGGGCTACTGATGGTCAGCGAggagcttctctctctctctctctcacacacacacacacacacacacacacacacagactgaaagGTAAATTTAACCGCTGCAGATCTCAGGGCCGTTCAGATTGCTGATATGCACAAACACAGGTGAACTGCAGAATCACTAAGTGCCTGATGGTGGCGCTCTCTCTCCGCCAGCCCTCATAAACTCTTCTGACAATCGTCCTGTTTAACGCAAGGCGTCGAGCGGCTCCTCATGCAATACCCGCCTCAGGCTGCAGGACGcacttctcttcttcttcttcttcttcttctgcttcttctgttggtttgttttgtgtttttgagagTCACATTCAGATTATTCTTATTCTGATTGCTGAAAATATGAGCCAAATATCTGCTGTGATGAAGGCAGTTTGCTTGTTCGGTGCAGATGTGTGTGTCGTGCTCAGCAGTGTTTGTGATGTGCTCCTCCgcttgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgacgtttGGTAGATGGGATAATTTATACGTGTGCTTTTTTTAGAATAATCTCTGCCTTTCCTGAGTCTGTGATCAGAGTGCTTGAGCTTCCAAACTCTCTCCTCAGTTcctttcagttgttgttttcttgATGCTGTTTGAATGCTGTGGATGGTGTATTATGTGTTTAATGTGGGCAATTGTCTTGAACAccctctaaaacacacacacacacacacaccttactgAAACTTGAgccttttttccctctttctggaaagaaaaacttttgttgatcaaaattgtaaaataaaaaattgtggaAATCTAGTTTCTGAAGGAGA
>XM_043264488.1
gagagagagagcgagagagggagtgtgtgtgtgtgtgtgtgtgggctgaTCCGCGGCGCGTCGCTGCTGAAGCGCGTCTGACCGTCTCTCAGTTTGGATTCATGATCATCGGCTGCGGACTGAACTCCGCACGGACGCGTTTCACTGTTCCAGCCtggaaatattaataaagatcCGCCAGCTCGAGCTGAAGTTAGTTTGTCGCGGGATATCAGATTTCTGTAGGAAATATTCTGCGCTGGAACTGATGCGGGAGATTTCTGAGTCTCTGTAACTAAAGACGCTTCACGGATCCGCCAGAGAGCAGCGCGATGGGACCTGTGACCGCGAGGAACAGCCTCTATCTGCTGTTTGGTGATAAAGCGCTGGATTAAAGCCTGAAGTGCTGCTGATGAGCCGGGCTCAGCTGAACGAGgGAGCAGCCGATCTTCACCACCAGAGCTCATGTCTTCCAGATTGATCCCACCACTAAGAAGAACTGGGTTCCCGCCAGTAAACAGGCCGTTACCGTCTCGTACTTCTATGACAGCACACGCAACAGCTACCGCATCATCAGTGTGGacgggtcaaagGTGATCATTAACAGCACAATCACCCCCAATATGAACTTCACTAAAACATCGCAGAAGTTTGGCCAGTGGGCTGACAGTCGTGCAAACACAGTGTTTGGACTCGGCTTCGCCTCTGAACAGCAGCTGTCAAAGtttgctgAGAAGTTTCAGGAAGTCAAAGAAGCTGCGAAACTGGCCAGAGAAAAATCTCAGGAGAAGATGGAGACGTCCAGCGATCAGTCGCAGGAATCTGGCCGTGAAACTCCATCAGGCAATCAAGCATCCAGCATCAATGGAACAGACGATGAGAAAATCTCACACGTGCCGGACACCACAGCGCTGAAGAGTGAGAACGACCGGCTGAAGTCTGTAGCGGAGCAGAGtaaGAAGCTGGAGACGGAGCTGCAGGCTCTGAAGGACAGCAACGCTCGACTGATGGACACACTGCAGGAGGCCAACAGCAGCGCAGAGAGCTGGAAGAGCAAAGTGACGCAGAGCCAGGACGAGAACAACCAGCTGAGGAACAAGatctcGGAGCTGGAGGTTCAGTGCAAGGAGGTAAAtctggagaaagaaagaaacactcAGCTGAGTCTCAGAATTCAAGAACTGGAAGCAGATCTGCAGGAAAAAGAACAGGAGCTGGAGGATCTGCGCAAACAGGCAGAAACCATCCCACAGCTTATGGCCAAATGTGAAAGTGTCTCGGTCAAACTACAGGCTGCAGAAACGGCCAACAGGGACCTGAGTGAGAAGATGACACTCCTGCAGAGCGAGATCGACGACAGCGAGCAGAAACAGAAGAACATGAAGAGCGAGCTCAAGAAGTTCATGGACGTTCTGGACGGGAAGATTGATGAGCTCCATGAAGTTCGTCAGGGCATTTCTAAACTGGGCGTCGataactgaacacacacacacacacacacacacacccctctctctcacactcatactcacatacactctctctctctctctctctctctctctctctctctctctctctctttctttcactgGGCTCCTGtcccgtgtgtgtttgtgatcttTTGACTGATGGTTAAGGGCTACTGATGGTCAGCGAggagcttctctctctctctctctcacacacacacacacacacacacacacacacagactgaaagGTAAATTTAACCGCTGCAGATCTCAGGGCCGTTCAGATTGCTGATATGCACAAACACAGGTGAACTGCAGAATCACTAAGTGCCTGATGGTGGCGCTCTCTCTCCGCCAGCCCTCATAAACTCTTCTGACAATCGTCCTGTTTAACGCAAGGCGTCGAGCGGCTCCTCATGCAATACCCGCCTCAGGCTGCAGGACGcacttctcttcttcttcttcttcttcttctgcttcttctgttggtttgttttgtgtttttgagagTCACATTCAGATTATTCTTATTCTGATTGCTGAAAATATGAGCCAAATATCTGCTGTGATGAAGGCAGTTTGCTTGTTCGGTGCAGATGTGTGTGTCGTGCTCAGCAGTGTTTGTGATGTGCTCCTCCgcttgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgacgtttGGTAGATGGGATAATTTATACGTGTGCTTTTTTTAGAATAATCTCTGCCTTTCCTGAGTCTGTGATCAGAGTGCTTGAGCTTCCAAACTCTCTCCTCAGTTcctttcagttgttgttttcttgATGCTGTTTGAATGCTGTGGATGGTGTATTATGTGTTTAATGTGGGCAATTGTCTTGAACAccctctaaaacacacacacacacacacaccttactgAAACTTGAgccttttttccctctttctggaaagaaaaacttttgttgatcaaaattgtaaaataaaaaattgtggaAATCTAGTTTCTGAAGGAGA

Function

symbol description
homer2 Predicted to enable G protein-coupled glutamate receptor binding activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in synapse. Is expressed in musculature system; periderm; and somite. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 68. Orthologous to human HOMER2 (homer scaffold protein 2).

NR:

description
PREDICTED: homer protein homolog 2

GO: NA

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264486.1 False 2355 mRNA 0.49 9 16339035 16348905
XM_043264487.1 False 2214 mRNA 0.47 9 16338045 16348905
XM_043264488.1 True 2455 mRNA 0.49 10 16339034 16348905

Neighbor

gene id symbol gene type direction distance location
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding upstream 3585 16329709 ~ 16334460 (+)
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 219283 16115991 ~ 16118762 (+)
LOC122362747 kifc3,LOC107670565 coding upstream 222201 16090090 ~ 16115844 (+)
LOC122362951 cngb1a coding upstream 252631 16075471 ~ 16085414 (+)
LOC122362746 cngb1a,LOC107670565,LOC107679572 coding upstream 262621 16063967 ~ 16075424 (+)
LOC122362844 fsd2,LOC107726333 coding downstream 13340 16362245 ~ 16368810 (+)
zgc:158482 LOC107727401,LOC107703947,LOC107569985 coding downstream 62460 16411365 ~ 16419019 (+)
slc27a2a NA coding downstream 71289 16420194 ~ 16426174 (+)
usp8 usp8,LOC107595392,LOC107715249,LOC107665382 coding downstream 93575 16442480 ~ 16452118 (+)
mibp2 mibp2,LOC107713061,LOC107690135,LOC107710817,LOC107663471,LOC107595359,LOC107595360,LOC107097782,LOC107381735 coding downstream 153029 16501934 ~ 16504465 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding upstream 126462 16208584 ~ 16211583 (+)
LOC122362955 NA non-coding upstream 279071 16058534 ~ 16058974 (+)
G126626 NA non-coding upstream 334227 15999452 ~ 16003818 (+)
G126605 NA non-coding upstream 509692 15825427 ~ 15828353 (+)
G126591 NA non-coding upstream 517715 15760963 ~ 15820330 (+)
G126722 whamm,LOC107595364 non-coding downstream 6326 16355231 ~ 16361646 (+)
LOC122362848 NA non-coding downstream 27533 16376438 ~ 16378666 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding downstream 56550 16405455 ~ 16406624 (+)
G126723 NA non-coding downstream 105092 16453997 ~ 16494634 (+)
G126755 NA non-coding downstream 113887 16462792 ~ 16463512 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 66778 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 282418 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 384392 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1290152 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1427888 14906616 ~ 14910157 (+)
G126820 NA other downstream 404804 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 725289 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 781017 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 954864 17303769 ~ 17309158 (+)
G127098 NA other downstream 1061780 17410685 ~ 17411593 (+)

Expression


Co-expression Network