larp6a (larp6,LOC107712978,LOC107595350,LOC107739963,LOC107576037,LOC103354325)


Basic Information

Item Value
gene id larp6a
gene name larp6,LOC107712978,LOC107595350,LOC107739963,LOC107576037,LOC103354325
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16780682 ~ 16789673 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264649.1
ATTTgaggtaaaaatatatttagcaaattttcaCTCTCAAAATCAAACCGTTTAGGAACTTTTCTTTGCTACCCCTTGAGTTCAGGGCCCGAGTGCTCAGGGTTCTGTTCGTTCTCTCGTCCTTCTGAAGACTAATCCTCGGTTTTAAAGCCTATTATCTGGTTTCCACCGCAGCTCTGATTGATCGCCGCTCGCGTCTTCCGCTAATTGCCTTCACGTGAAACAATCACGGCTCTACGATATAAATGCCCCGGCGCGGCGCTCGCCGCCTCTCTAAGTAATGAGAAAGAGACGCGAAGAAATGTCCGCCGCGCTCAACGCGTTCCTGCGCTGCGTCGCGTTCCTGCTGCCGCCCTCTTGGCTTCAGTTTTGCTGGTGGGTTGGGGAGGCGTCATGGCCCAATCCCAGAGCTCGATTCAAACGCACAAAGCCTCTTACATATGAGGAAGTAGCTGCTCGGGGCGAGCCTTCCTGCTCTGATCGCGCCGCGCCGTCGCCGTCTCCGTGGCGCAGAATCCTGACGCTCGCGGAGCGCGTCCTCTCGGCTCTCTTTGATCTTCACGCGCGTCTGGGGAGTTTGTGTTCGCCGCGCCGCGTCGCCGCCGGTTCTCCATCGAGCGCAGCCGCGGAAGAGGAGGCGTTCACGGCGGAGATCATGAGCACCGAGGAGCCGCGGGAGATCAGCGCTCCGGTGACCATCACCGTGGCCATCCAGGCGGCGGAGGACGAGGAGCCCTCCTCCAACACCGTCGAGCTCCAGACGGGCAGCGGCAGCGAAGACGAGCTCGCCAGACACGATAAGTCCAGcggcGCAGGGACCAGCGGCggggagctggaggaggagagcTGGCAGCCTCCGGACACAGAGCTCATTCAGAAGCTGGTGGCGCAGATTGAATATTATCTGTCGGACGAGAACCTGGAGCACGATGCCTTCCTGCTCAAACACGTCCGCCGCAACAAGCTGGGCTTCGTCAGCGTCAAGCTGCTCACCTCCTTCAAGAAGGTCAAGCACTTGACGAGGGACTGGAGAACCACGGCCTACGCCCTGCGTCACTCCGAGCTGCTGGAGCTGAACGACGAGGGCCGCAAGGTCCGGCGCAGGACGACGGTGCCGGTGTTCGCCAGCGAGTCTCTGCCGAGTCGCATGCTGCTGCTCAGCGAGCTCAAGCGCTGGCCGGAGCTGGGGGTCGCGCTCGGGGCCGACGGAGAGTCGGGGGCCACCCAGCAGGAGCGGCTGATGGAGCTCCTGCTCAAGGCCTTCGGAAACTACGGGCCGATCGCCTCCGTGCGGGTCCTCAAGCCCGGGAAGGACTTGCCCGGTGATCTGAAGAAACTGAGCGGGCGTTACTCGCAGCTGGGGACCGAGGAGTGTGCCATCGTGGAGTTTGAGGAGGTGGAGGCGGCCATGAGAGCCCATGAGGCGGTCGGCGGGGACTCGGGCGCTCGAGGGCCGCTGGGACTGAAgGTGGTTCTAATCGGCACCAAGCCACCCAAGAAAAAGATCCCAAAGGACCGAGACGAGGGAGTGGGAGGCGTCCGCAAGAGCCGCTCGCTCAACAGCCGCGTTCGAGAGCTCCAGTACCACGGCGGAGACGACTCGGCCGCGAGCTCCTCGGAAACGGAGAGCAATCCCACCTCACCTCGTTTGGCCCGGAAGTCGCGCTCCTGCAACAAGCTCAGCCCCACGAGCGCCGGGCCCAATCACCTGAGCCCAGCGGTGTCCCCTCGCTCCAGCCCCTGGAGCAGCCCTCGAGCGAGCCCCTGCACCCAGCGCAAGACGCCGCTCTCAGGGAAGTCTCCGCTGGCTAGCGAGGGCCGCCTGAGCCCCGAGCCAGGTCGCCGGTGGGCGGACTATTCCTCGGACAGCAGCTTGACCCCTTCGGGAAGCCCCTGGGTTCAGCGGAGGAAGCAGGTGGCCAGTCAGGAGAGCAGCCCGGTGGGGAGCCCGATGCTCGGGAGGAAGATCCAGAACGCAGACGGTCTTCCTCCAGGCGTGGTTCGGCTCCCGAGGGGCCCGGACGGGACGAGAGGCTTCCACCCTGCTCCCTCCGGAGAGCGAGGCAAGGCCGTCTCCACGCAAACCTGTCTCTGAAGACCGTCCCTCTCCAGCCTCGCACTCTCAAAGCAGTCGTGACATCTCCGTAAGGACTGACCTGTCTTTTTGTAAAACCTTTTTCTATATGCTATTTTTGTTAACGTTTTATACATCTTAATTTCTCACTGAACGATGGCACCGCAACCAGGGAAGCTGTTCCGAAAGTGTTTGGGTTTTAAATTGCCGCTGTGTTTTCCGTTGTGAGAAGATTCTCCCGGTGTCTGACTCccatgtaaatattgtaaatgtgttCCGTGTGGGTCTTGGTTTGCTTCTGATCTCAGCCTTTGATGAAGCCGTGGCCATACTCTCGGGAGCCCGGGCACTGGggatatattttgttttatttgctttaacttctgttttgtttctgccTTTAAACGTGCTTTTCATTTTAGCGACTTGCGGATCTGATGggatgaggtttttttttttttttttttgtctccgtTCTTCGGTTGAGTCCTCTCTGTGAAAGAGTGTTTGAGGTTTGTGTCCTGAGCACAAACGCCTCGTATCTGCCCTCAGTCTGGGTCGAGGCGATGCACCGTCTGCTTccttactgtacaaataaatcaCTACAATCGCAGTTA

Function

symbol description
larp6 Enables RNA binding activity and myosin binding activity. Involved in positive regulation of collagen biosynthetic process; positive regulation of mRNA binding activity; and positive regulation of translation. Located in nucleus. Part of polysome.

NR:

description
PREDICTED: la-related protein 6-like

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264649.1 True 2691 mRNA 0.59 4 16780682 16789673

Neighbor

gene id symbol gene type direction distance location
myef2 myef2,LOC107698879,LOC107739991,LOC107568149 coding upstream 62524 16705581 ~ 16718158 (+)
fbn1 fbn1,LOC107713176,LOC107595388,LOC102779271 coding upstream 102616 16618170 ~ 16678066 (+)
secisbp2l secisbp2l,LOC107573840,LOC107740797,LOC107713195,LOC106587693,LOC107698883 coding upstream 170556 16592589 ~ 16610126 (+)
LOC122323202 nnt2,LOC108412674 coding upstream 229965 16536459 ~ 16550717 (+)
slc30a4 slc30a4 coding upstream 257999 16514170 ~ 16522683 (+)
ulk3 ulk3,LOC107665498,LOC107681021,LOC107595383 coding downstream 29614 16819287 ~ 16829354 (+)
LOC122363001 NA coding downstream 169151 16958824 ~ 16971364 (+)
LOC122362752 LOC107665215,LOC107595393 coding downstream 277421 17067094 ~ 17069819 (+)
LOC122362967 NA coding downstream 289386 17079059 ~ 17099562 (+)
unc13c unc13c,LOC107554226,LOC107665324,LOC108411445 coding downstream 536293 17325966 ~ 17354848 (+)
LOC122362527 NA non-coding upstream 41312 16736723 ~ 16739370 (+)
G126815 slc24a5 non-coding upstream 57208 16723216 ~ 16723474 (+)
G126813 slc24a5 non-coding upstream 60552 16719496 ~ 16720130 (+)
G126792 NA non-coding upstream 107376 16672536 ~ 16673306 (+)
G126786 NA non-coding upstream 169207 16611181 ~ 16611475 (+)
G126826 NA non-coding downstream 13099 16802772 ~ 16803493 (+)
G126797 NA non-coding downstream 45616 16835289 ~ 16873985 (+)
G126854 NA non-coding downstream 147428 16937101 ~ 16937486 (+)
G126856 NA non-coding downstream 153146 16942819 ~ 16943240 (+)
G126858 NA non-coding downstream 154690 16944363 ~ 16944728 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 509415 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 725055 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 827029 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1732789 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1870525 14906616 ~ 14910157 (+)
G126884 ctxn2 other downstream 284521 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 340249 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 514096 17303769 ~ 17309158 (+)
G127098 NA other downstream 621012 17410685 ~ 17411593 (+)
serp1 NA other downstream 664481 17454154 ~ 17455657 (+)

Expression


Co-expression Network