aamdc (aamdc,LOC107658908,LOC107660681,LOC107600309,LOC107600345)


Basic Information

Item Value
gene id aamdc
gene name aamdc,LOC107658908,LOC107660681,LOC107600309,LOC107600345
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18544363 ~ 18546307 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264715.1
GTACGTCACTGAACGGCAGCCAATCAGCGTGAAGTGCCGAAGCGTACGCCGATTTGACGCTGGCCAGTGACGCGCTGGTGGGCGTGTCCCGCCGTCACGCGAAGAGAAACACAACAAGCGAGATTGAATTCCGGGCCGAGGAAAGCTGATCATGACTTCTCCAGAAATTGCTTCCTTATCCTGGGGCCACATGAAGGTCAAAGGTTGCACCGCATCCTACAAAGACTGTAAAGTGTGGCCAGGTGGCAGCCGAGCCTGGGACTGGCGTGAAACCGGTACAGATCATTATCCAGGCGTCCAGCCAGCCGACCTGGAAGAGGTCCTAAGGAAAGGGGTTCAGACTCTGGTCATAGGAAGAGGGATGAGTGAGGCTCTACAGGTGCCCCCGTCCACTCTAGATTACGTGAAGAAGCAGGGTGTTGATGTCAGGGTGTTTCAGACCGAGCAGGCCGTTAAAGAGTACAATGTTCTGGCAGGACAGGGAGCTAAAGTCGGCGGGGTCTTCCACTCCACCTGCTGATCACATCATTCATACAACGAGCtaattcatttgatttgtcGTCCAAAGTGCCTTACATTACAAATTAACATTGTTTTCTTAATTTGCACTCAAACTACTGGAGGACTATTTTCTTGgtgaaaatgttatttgctttataatcattaaatgattattttttgaa

Function

symbol description
aamdc Predicted to be involved in positive regulation of fat cell differentiation. Predicted to be active in cytoplasm. Orthologous to human AAMDC (adipogenesis associated Mth938 domain containing).

NR:

description
mth938 domain-containing protein

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264715.1 True 683 mRNA 0.49 4 18544363 18546307

Neighbor

gene id symbol gene type direction distance location
aqp11 LOC107659225,LOC107715828,LOC107594401 coding upstream 20799 18519991 ~ 18523564 (+)
hcn4 hcn4,LOC107658947,LOC107715829,LOC107553361,LOC107668476,LOC107594389 coding upstream 83554 18393603 ~ 18460809 (+)
LOC122362573 LOC107668478,LOC107715830,LOC107658962,LOC107594373,LOC107553363 coding upstream 157433 18339199 ~ 18386930 (+)
ugt5f1 LOC107709391 coding upstream 200506 18339143 ~ 18343857 (+)
pepd pepd coding upstream 209881 18277364 ~ 18334482 (+)
LOC122323077 LOC107600293,LOC107660691,LOC107735981,LOC107658864,LOC107594385 coding downstream 108311 18654618 ~ 18658740 (+)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107735288,LOC107600237 coding downstream 833728 19380035 ~ 19388663 (+)
LOC122323148 LOC107735994,LOC107660689,LOC107755676,LOC107687769,LOC107600770,LOC107572113,LOC107570700 coding downstream 858014 19404321 ~ 19451211 (+)
LOC122362761 LOC107686603,LOC107662910,LOC107600197,LOC107735331 coding downstream 1053705 19600012 ~ 19603818 (+)
LOC122362762 LOC101886557 coding downstream 1077905 19624212 ~ 19625612 (+)
G127443 clns1a,LOC107594388,LOC107579082 non-coding upstream 16021 18527129 ~ 18528342 (+)
G127434 NA non-coding upstream 25902 18491997 ~ 18518461 (+)
G127431 NA non-coding upstream 57092 18485857 ~ 18487271 (+)
G127413 NA non-coding upstream 192260 18351740 ~ 18352103 (+)
G127268 NA non-coding upstream 563022 17977675 ~ 17981341 (+)
G127460 NA non-coding downstream 27512 18573819 ~ 18574354 (+)
G127492 NA non-coding downstream 144258 18690565 ~ 18693231 (+)
LOC122362700 NA non-coding downstream 784015 19330322 ~ 19348479 (+)
LOC122323165 NA non-coding downstream 906223 19452530 ~ 19480221 (+)
LOC122323166 NA non-coding downstream 941263 19487570 ~ 19568485 (+)
G127292 NA other upstream 404110 18138535 ~ 18140253 (+)
G127258 NA other upstream 616198 17922928 ~ 17928165 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other upstream 657152 17883618 ~ 17887211 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other upstream 729941 17808601 ~ 17814422 (+)
serp1 NA other upstream 1088706 17454154 ~ 17455657 (+)
G127456 rps3 other downstream 13656 18559963 ~ 18563152 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other downstream 100055 18646362 ~ 18652164 (+)
G127500 NA other downstream 184383 18730690 ~ 18841535 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other downstream 723304 19269611 ~ 19288556 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other downstream 1456697 20003004 ~ 20015706 (+)

Expression


Co-expression Network