CI01000001_03821989_03823336 (SLC48A1A)


Basic Information

Item Value
gene id CI01000001_03821989_03823336
gene name SLC48A1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3821989 ~ 3823584 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03821989_03823336.mRNA
CTTCTTCTTACAGCTTTACTGCGGTACTTTATACATTATTAATGGGTCCAAACAGGATCTACATCAGTGTAGGTTATGCCACATTCGGCATGTTGGTGGGTTTTTCTGCGTTTATCGTGTGGAATGTGGTTTATAAACAACCATGGACGGCGGCGTTGGGCGGATTATCAGGCGTTCTGGCACTCTGGGCATTAGTCACTCACATTATGTACATTCAGGACTACTGGCGCACGTGGCTGAAGGGACTCAAGTTCTTCATGTTTGTTAGTTCTGTCTTCTCCCTCCTGGCTGTTGCTGCTTTTGCCACCTTCATATCTCTAGCTGTTATAGAAAAGCAGTCATTAACTGACCCTAAGAGCTTCTATCTGTCAGCCGTGTGGAGCTTCTTGACTCTTAAATGGGCCTTCCTGCTGGGCATGTACTCCTACCGTTACCGCCAGGAGTTTGCTGACATCAGCATCCTCAGTGACTTTTGATTGGCTGCTTCAGCTGCAAAGGATTTGCAGTCGGTGGCTTCACCTGCCAATGTGGAGATGGAAGGATGGATTGATGGTTCTCCTATTTAATGCCGTCTAACGGCCTCCTTGCTTTCACAGAAAAGACTCAAATCTCAGACCCTCCTTCCCCTCAGATCCGGGCCCTGGAGTAAGAAGTTGATGAATGTCTGTGATCTGCCTCTTTCCTGTCTTTTTGAGTTAATTGGGGGGTTTTATATTGACATTGG

Function

symbol description
slc48a1a Enables heme transmembrane transporter activity. Predicted to be involved in heme transport. Predicted to be located in endosome membrane and lysosome. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane and plasma membrane. Is expressed in several structures, including blood; central nervous system; heart; liver; and pleuroperitoneal region. Orthologous to human SLC48A1 (solute carrier family 48 member 1).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K15380 SLC48A1, HRG1; solute carrier family 48 (heme transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03821989_03823336.mRNA True 724 mRNA 0.47 3 3821989 3823584

Neighbor

gene id symbol gene type direction distance location
CI01000001_03719251_03775929 ITGA5 coding upstream 45564 3718190 ~ 3776425 (+)
CI01000001_03669438_03673748 CSRNP2 coding upstream 148202 3668725 ~ 3673787 (+)
CI01000001_03650790_03662852 LSF, TFCP2, TFCP2.L coding upstream 159045 3650636 ~ 3662944 (+)
CI01000001_03638240_03647295 POU6F1 coding upstream 174309 3638240 ~ 3647680 (+)
CI01000001_03618075_03620436 NA coding upstream 200557 3618075 ~ 3621451 (+)
CI01000001_03830254_03833027 NA coding downstream 6670 3830254 ~ 3833027 (+)
CI01000001_03865986_03866675 NA coding downstream 41773 3865357 ~ 3867469 (+)
CI01000001_03867875_03890850 NA coding downstream 44256 3867840 ~ 3890989 (+)
CI01000001_03983212_04011240 NA coding downstream 159544 3983128 ~ 4011596 (+)
CI01000001_04085864_04225894 PLXNA2 coding downstream 262280 4085864 ~ 4225894 (+)
G14874 NA non-coding upstream 126597 3636855 ~ 3695392 (+)
G14878 NA non-coding upstream 137521 3683322 ~ 3684468 (+)
G14873 NA non-coding upstream 188406 3633093 ~ 3633583 (+)
G14842 NA non-coding upstream 197359 3621578 ~ 3624630 (+)
G14856 NA non-coding upstream 237947 3583116 ~ 3584042 (+)
G14911 NA non-coding downstream 17559 3841143 ~ 3841354 (+)
G14912 NA non-coding downstream 20885 3844469 ~ 3844841 (+)
G14917 NA non-coding downstream 28247 3851831 ~ 3852048 (+)
G14931 NA non-coding downstream 54935 3878519 ~ 3878797 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 2150985 1667762 ~ 1671167 (+)
G13051 NA other upstream 2776837 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 3329932 483853 ~ 488825 (+)
G12614 NA other upstream 3511048 309144 ~ 310941 (+)
G15794 NA other downstream 1237634 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 1463165 5279837 ~ 5287698 (+)
G15995 NA other downstream 1888301 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 3708988 7531541 ~ 7540586 (+)
G17234 NA other downstream 4208540 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022502 slc48a1a coding NC_007134.7 CM002907.2 33357163 ~ 33361425 (-)