LOC122362951 (cngb1a)


Basic Information

Item Value
gene id LOC122362951
gene name cngb1a
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16075471 ~ 16085414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264766.1
TggattttattcttaaaatgtcCAATGCCGAAGTAGCCTAAAATCCAGATCGTCCAATGCTTGACAACTATAGACATGACTTTGAAGTGCCCTGCAGTTGCAGAAAGACTCCAGACCTCCAGCAATCTCTCAGAAAACGCCCATGTGAAGCCAGCACTGaaggtggaggaggtggaggacgGAGAGATGAGCGTTCCTCAAATCATTGTGCCCTCAGAGTTAGACTCAATGACCCTCACTGTTCCTGCAACCAATCTGACATCCCGCAGTAAAGCTGTGGATTCAGAAAGAACGCAGGAGGAGATGGCTCCTGGAGAGGAAGATGACTTGAACATGTCTGATCTGCTTAATGTGAATGAAGGTCTTGAGCGCCCAGCGTCTGCAGCCAGCCAGACAAGCATTGTCGTGAATGAGCGTCTGCAGGAGCTGGTCAAGCTGTTTAAGCAGCGAACGGACCATGCGAGAGACAGACTGGTCGATCCAGATGAGTCTGATGATGAAAGCCCTTCAGCATCTCCGGCCAAAAAGCCTGGTGAAGCCccacctccaccacctcctccagaggaaaagaaagatgaTGAGGAGAAGGCTGAAGAGGAGGTTCAAATCTACGAGTTTATGGGATACAAGTTCCCGGTTCCTCAGTTCAAAATGCCCCAGATTCCTGCGTGGCTGAGAGCCATCCTGAACTACCGTTTCCCATCCAGCATTGATCCCTACACAGACTTGATCTACGTGGTGTGGCTGTTCTTTGTGACGTTCGCGTGGAACTGGAATGTTTGGCTGATCCCGGTGCGCTGCACTTTCCCGTACCAGACGCCTGACAACATTCACTGGTGGCTGCTGATGGATTACTTATGTGACGGCATTTATCTTCTCGACATCTTCGTTATGCAGCCCAGACTGCAGTTCGTGAGAGGAGGGGACATCGTGTGTGACAAAGACGATATGAGAGACAACTACAGGCAAACAGAACGATTCAAGATGGATGTGATCAGTCTCTTTCCGCTGGATTTGCTGTACTTCTTCACAGGCGTCAAATCCCTCTTGAGGTTCCCTCGCCTTCTAAAGTACAATGCATTCTTCGAGTTTAATGATCGTCTGGAAGCTGTGATGAGCAAGGCCTACATTTACAGGGTGATCCGGACGAGTGCGTACCTGCTGTATTCTCTGCACTGTAATGCCTGTATCTTCTATTGGGGTTCTGACTATGAAGGACTGGGATCTACCAAATGGGTCTATAATGGCAAAGGAAACAGTTATATTCGCTGCTACTACTTCGCTGTGAAGACTCTGATCACCATCGGAGGTTTGCCTGATCCCACCACTGTCTTTGAAATCGTCTTTCAACTCGTCAACTACTTCGTGGGAGTCTTTGCTTTCTCCATCATGATTGGTCAGATGAGAGATGTATTTGGAGCTGCTACTGCAGGTGAGGCCTATTACAGACACTGTGTGGACAGCACCGTCAAATACATGAGCTCCTACAGGATCCCCCGCGAGGTCCAGAACCGCGTCAAGGTCTGGTACGACTACACCTGGAAGTCGCAAGGCATGCTGGatgAACAGGAGTTACTCATACAGCTGCCAGATAAGATGCGTCTGGACATCGCTGCAGATGTCAACTACAGCATTGTCAGTAAAGTGGCGCTCTTTCAGGGCTGTGACAGACAGATGATATTTGACATGCTAAAGAGGCTGAAATCTGTGGTCTACCTTCCTGGAGACTTTGTTTGCAAAAAAGGTGAGATCGGCAGAGAGATGTACATCATCAAAGCTGGAGAGGTGCAGGTGGTTGGAGGGCCTGATGGGACGACGGTGTTTGTGACTCTGAGAGCTGGCTCTGTGTTTGGGGAAATCAGTTTGCTGGCGGTTGGTGGCGGGAACCGGCGAACGGCGAACGTGAAGGCCCACGGTTTTGCTAATCTCTTCATCCTGGATAAGAAGGACCTGGCAGAGATCTTAGTGCACTACCCCGAATCCCAGAAGCTGCTGCGCAAGAAGGCCAAGAAAATGTTGACCAAAGATAAGAAGCCGGCAGATGAGAAGGGCCAGGCTAAAGATACGGGTGAGGTCATCCCGCAGAGGCCAGAGACGCCCAAATTATACAAGGCTGCGCTGGAGGTTGGCACAGGAGAGACTTTTGCCAGGCTGAAGGAGTCGTATAAGGGAGCAACTCTAGAGccgTCCACTCCCGTCTCCGGAAGGACCTCCACAGCTCCAGTGCCCCCTCCGTCCCCAATGCACCGCCGTTCGCCCATTCCCCGGCCTCGTGTCCCGGACGAAGATGACATGGTATCGGAGACCACCGACAGCACCATGATCATCCGCATGACTCCCCGTGTTGAGGGAGAGGAGATCCTCTCCGTGGAAGTCAGTCCCGGAGAGGGAGCGGAGCCAGAAGAGCAGAGCAAAACTGAAGACTAGAGAGAGAAAGGATGAGGGCACGGACAAAGACCAGAGTAGGGATAGGGTAGATAGCCTGAAGAACGGCACGATGCATACAACCCTCGTCATGCTTTCTGTAGTAGCATGCTGGTGAAAGTCCTACACATGCTTTTCAACCAGGTCAAGTCAAGACTCTTTGGAGAATTTATAGGCATCttttcagaaaagaaacatACTATAAGTTCCTGAGAGAACTCTTAAGCTTCCATTGGTTCTTCTAGTAAGTTCATCGTAATCAGAGTTTTTAAGGCATTTGACGCAAGATGATGCACAATATCTGAAGGACCTACATTTGACTAGAAGttctcaaaatattacatttttacagtggcGCTTTACAGTGTCTAAGGGTGTGTTTACACTTATAGTAAGGTTTTCTTTTGGACTGGTTCAAaaagtaaatgtacatttaaccCTGGATTGCTTAGCGTTCACATTGTCTGCATTGCTTTCGTATTTTTCACCAAAGATTTTTGGGAAGTGGGCAGAGACCTAACTTTTCTTGAGGTCTGAGTCCGCTTGTTTGGTGTGCACCGAGGTTCGAGTATCAACATTCATAAACATGCCCTAAATCTTATTTGAAAGTGAAGTGAGCTTCTGACAGGTATTCCAGAAAGTAGAGTTAACTCACTCTCAAATCTTTCTTCTGGTTAACGGTTCCAATAGCAGAGAGTTCAGTCGACTCTGAGTATGTTCAcggtgaacacacacatacaagtcTTCTCAATTCGAAAGGCGTGCAACAAAGTACACTGtactttttttgaataaataaataaatacctccTGTATTGCCTAACCTTTCAACACAGTCTCACGACCAATTCGTATGTATTTCACGAGGTGCCATATTTGTAGAATTCGTTCAACCGTAGCGACGGGTAGTTTTTGGGGCGAGGTTAGGTGTAGGccatttgtacaaattcatgCAAAAACTTGTATAAATTTGTACGTGTGAAGTCGTACCAATTCGTACGAATTAaccaccttgtaaaatatgaaCGAACTGCCGtgagaaatatattatttgtttgatactaaattagtaaataaaaaaa

Function

symbol description
cngb1a Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 45. Orthologous to human CNGB1 (cyclic nucleotide gated channel subunit beta 1).

NR:

description
cyclic nucleotide-gated cation channel beta-1 isoform X7

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04952 CNGB1; cyclic nucleotide gated channel beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264766.1 True 3506 mRNA 0.47 19 16075471 16085414

Neighbor

gene id symbol gene type direction distance location
LOC122362746 cngb1a,LOC107670565,LOC107679572 coding upstream 47 16063967 ~ 16075424 (+)
zgc:158464 LOC107572397,LOC107740353,LOC107692470,LOC107599765,LOC107711356 coding upstream 36560 15955905 ~ 16038911 (+)
ubl7b LOC107668695,LOC107579017 coding upstream 260618 15810671 ~ 15814853 (+)
insyn1 LOC107692472,LOC107740352,LOC107656969,LOC107722291,LOC107581104 coding upstream 405314 15613403 ~ 15670157 (+)
scamp5b scamp5b,LOC107740350,LOC107722282,LOC107599784,LOC108430449 coding upstream 556554 15511535 ~ 15518917 (+)
LOC122362747 kifc3,LOC107670565 coding downstream 4676 16090090 ~ 16115844 (+)
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding downstream 30577 16115991 ~ 16118762 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding downstream 244295 16329709 ~ 16334460 (+)
homer2 homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443 coding downstream 252631 16338045 ~ 16348905 (+)
LOC122362844 fsd2,LOC107726333 coding downstream 276831 16362245 ~ 16368810 (+)
LOC122362955 NA non-coding upstream 16497 16058534 ~ 16058974 (+)
G126626 NA non-coding upstream 71653 15999452 ~ 16003818 (+)
G126605 NA non-coding upstream 247118 15825427 ~ 15828353 (+)
G126591 NA non-coding upstream 255141 15760963 ~ 15820330 (+)
G126458 NA non-coding upstream 1008894 15066346 ~ 15066577 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding downstream 123170 16208584 ~ 16211583 (+)
G126716 homer2,LOC107569981,LOC107703939,LOC107595365 non-coding downstream 181600 16267014 ~ 16364205 (+)
G126722 whamm,LOC107595364 non-coding downstream 269817 16355231 ~ 16361646 (+)
LOC122362848 NA non-coding downstream 291024 16376438 ~ 16378666 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding downstream 320041 16405455 ~ 16406624 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 19844 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 121818 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1027578 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1165314 14906616 ~ 14910157 (+)
gemin7 NA other upstream 1247179 14826788 ~ 14828292 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other downstream 178425 16263839 ~ 16271267 (+)
G126820 NA other downstream 668295 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 988780 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 1044508 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 1218355 17303769 ~ 17309158 (+)

Expression


Co-expression Network