LOC122362967


Basic Information

Item Value
gene id LOC122362967
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17079059 ~ 17099562 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264794.1
ATCACTTCACCTTTGATGGAGCGAGAACGTTTTTACCCCCATCAGGAGCATCTAGAGGATGGACCAATCGGCTTCCATCTGTTCCACGGCTATATAAAGTCTCGCATAAACACATCAACTAAACACAGGGGTCTGATTCTCAAACATCTCAACCACTTGTGGCCCAAAGAAAGAGACCTGACCTGGAAGCTCAAAGGAGCTCAAACTACTGTAGCCTGCCTTCTGATGGAGAATACCGGGTTCGAGAGATCTAAAGACGACCCTCCACAGTACGAGGAGACGTCTTTTTGTGGCAATGGGTTCAATAACGGAGAGCGGCAGGCCGTGCGGGCATCTGTGGTCAGCGCTTTCGGCCACAACACCCTGGACCGGGTGCCAAACGTTGACTTTTATCGTAACGCGGCGAGCATCAGCGGACAGAGAGCCGTCAGACCTTCTCTACAGGAGCTGCACGATGTCTTCCAGAAGAACGGAGGCCTTGATATTCCCAGTCCGGTGGAGGACAGAGAGGGAGCAGACACCTCGACGCTGGGCGATGTGGAGTCCATCATCCCGCTGGACGAGAAGGACACGGGAGGAGTGGTGAAATTTGGATGGATCAAAGGAGTTCTGgtgagATGCATGCTGAATATCTGGGGTGTCATGCTGTTCATACGGCTGTCATGGGTGTTCGGACAAGCCGGAATAGGTTTGGGGATCGTGGTCGTGTTGTTGAGCATCGTGGTGACCAGCGTGACCTGTCTGTCCATGTCAGCTATATGCACCAACGGCGTGGTACGAGGAGGTGGAGCGTATTATCTGATTTCCCGCAGTCTGGGGCCTGAATTCGGCGGCTCCATCGGTCTGATCTTCGCGTTCGCCAACGCTGTGGCCGTGGCCATGTATGTCGTGGGGTTTGCTGAAACCGTGGTGGAGCTTCTCAAGGAAAGCAACGCTCTGATAGTGGATCCGGTGAATGACATCCGGATCATCGGCTGTATAACGGTGGTTCTGCTGATGGGCATCACTGTGGCGGGAATGGAGTGGGAGGCCAAGGCTCAGGTCGCTCTGCTGGTGATCCTGCTGATAGCCATCGCCAACGTCTTCGTGGGAACAGTGATTCCCTCCACACAAGACAAGCGCTCCAAAGGCTTCTTTAACTATCGAGAATCCATCGCGAAGGAAAACTTTCTACCGGACTTCCGAGATGGAGAAACGTTCTTCTCAGTTTTTGCCATCTTCTTCCCGGCGGCCACCGGGATTCTGGCCGGAGCCAATATCTCTGGAGATCTGAAGGACCCTCAGGCAGCTCTTCCCAAAGGAACGCTGCTGGCCATCTTCATCACGGGGATGACGTACCTGGGCATCGCTCTGGTTGTCTCTGTGACGGTGGTTCGAGACGCGACGGGGAACCGCAACGACACCATCAAACTGGGCTCCAGCTGTAACTTCTCCTCGGCCTGTGAGATGGGCTACGACTTCTCCATCTGCCAAACCACCAAATGCAACTACGGCCTCATGAACAACTTCCAGGTGATGACCCTGGTGTCGGGGTTCGGACCTCTCATCACAGCGGGGACGTTCTCAGCCACGCTTTCTTCAGCTCTCGCGTCTCTAGTGAGCGCGCCCAAAGTCTTCCAGGCTCTATGCAAGGACAACATCTACAAAGCCCTCAAGTTCTTCGCCAAAGGTCACGGGAAGAACAACGAGCCAATCAGAGGATACGTCCTGACCTTCTTCATCGCTGTAGCATTCATCCTCATCGCTGAGCTCAACACCATCGCTCCCATCATCTCCAACTTCTTCCTGGCTTCATACGCCCTCATCAACTTTTCCTGCTTCCATGCTTCATACGCCAAATCCCCAGGCTGGAGGCCGGCGTATAAGTACTATAACATGTGGCTGTCTCTGTTCGGAGCCGTTCTCTGCTGTGCCGTGATGTTCGTGATTAACTGGTGGGCGGCGCTGCTCACCTACGGCATCGAGCTCTTCCTCTATATTTACGTTACAGTGAAAAAGCCAGATGTGAACTGGGGTTCGTCCACTCAAGCCGTGACGTTCATAAATGCTGTGAACAACGCTCTGACTTTATCTTTGGTGGATGAACACATCAAGAACTTCAGGCCCAAGTGTCTGGTGATGACGGGATCTCCCAGAAGCAGACCGGCGCTGCTAGACTTGGCACATTCGTTCACGAAGAATTACGGGCTGTGTCTGACTTGTGAGGTGTTTTTGAGTTCCCGGCGGCCCAACTTCAAAGAGCTGAACAGTGATATGTTACGCTACCAAAGGTGGCTCCTTAACAAGAACTCCAAGGCGTTTTACACTCCTGTGGTGGCAGAAGACCTTCGCCAAGGAACCCAGTACctgctgcagGCCGCTGGTTTGGGCAGACTGAGACCCAACACACTGGTGCTCGGCTTCAAAAACGACTGGCGCATCGGAGACATAAAGGAAGTCGAGACTTACATCAACCTGATCCAcgatGCGTTTGACTTCCAGTACGGCGTGGTCATTCTCAGACTGCGGGAGGGACTGGATATCTCTCACATTCAAGGCCAAGATGACTCTTCGGCGATGAAGGACGTGGTGGTTTCAGTGGACATGAGCAAAGACTCGGATGGAGACTCGTCCAAACCCTCCTCCAAGGCCACCAGTGTCCAGAACAGCCCGGCCGTCCAGAAAGatgaggatgaggatggcaGAGCCTACACTCGGCCGCTGCTGAAGAAAGagaagAGGAGTCCGACGGTTCCTCTGAATATGGCCGAGCAGCGGCTGTTGGACGCCAGTCAGCAGTTCCAGCAGAAGCAGGGGAAGGGCACCATCGACGTCTGGTGGCTCTTTGATGATGGAGGCCTGACTCTGCTGATACCCTATCTGATCGCCAACAAGAAGAAATGGAAGGACTGTAAGATTCGAGTCTTCATTGGAGGCAAGATCAACCGAATCGACCACGACCGCAGAGCCATGGCCACATTGCTCAGCAAGTTCAGGATCGATTTCTCTGACATCACGGTCCTGGGTGATATCAACACAAAGCCCAAGTCAGAGGGTTTGACAGAGTTCGCTCAGATGATCGAGCCATATAAGCTGAGAGAAGATGATATGGAGCAGGAAGCTGCTGAGAAGCTGAAGAGCGAGGAGCCCTGGAGAATCACAGACAATGAGCTGGAGCTCTACAAAGCCAAGAGTAACCGTCAGGTCCGACTGAACGAGCTGTTGAAGGAGCACTCGAGCACAGCCAACCTCATCGTCATgaGCATGCCGCTGGCCAGGAAAGGGGCCGTCTCCAGCGCTCTGTACATGGCCTGGCTGGAAACACTATCCAAAGACCTGCCGCCCATCCTCTTGGTGCGCGGGAACCATCAGAGCGTCCTCACCTTCTACTCGTAGAGCACTCTCAGACGAGCACAGCACCTcagactgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatagacGTTTCTGGACAGAGCTGACCGGAGCGGACTCCTTCCACGCTGCCGCGGCGCTCCGCAGGAGAGATTGGCGGTGTATGTTGTCCTCAGCTCACAGGTTTCGAGCACATGTTGTTACACTGATTGTTGTTATCATTGTTATCATTACTATGACTGTCACAACTTTTTGAGTTGtggaatttaattttttttttcctctttttaattTGCTCTCGATGAAGCAATAATCAcctcatttcttattttctcacTTTGAAGAAAACACATGATTCTTTGCAACACTTTTTATAGCCTTGTGGATGTGCCTTCCTGTGCAATCAGATTAAATtcttacactttttttcccctgactGGTGATTTATAACGAAGTAGATGTAGGCTGCTTGTTTCTATTGGGTTTTAATGTAAATCTTCCTtgattttatcacattttaGAGCGAGTGGATTGAGGTTTCCACCGCGGCACgtttgaaaacaattttttgcatttttgtaggcagatttttgtttcttcttaaGTTTTACGTCTTCCTTTTAAGCATTGAATGAGTGGTGGAGTTTTAGCACATCGTCCCTTCGTTCAATGATCGACCTGAACTACAGGGTGATTACAATCCTTCAAGTAGTCTGATGTAAGTTTAACAGAACTATATTAGTTTTCCCTGGTGAATGGGTTTGGTGTGATGGAGAGAGGCTGATGAGTGTCTGTCTGAAGGAGAAAGAGCGGTCAGATCACAATCAACCAAATAAATCACAGACCCTGCTACAGACCAGACCTTTGCCTTAACAGATGATTGTTTTACTGTCTTCAAGCCATACTGGCTCGTGGATTGACTGAAGCAGAATGTGCTCCTGACCGGAAGTCCTCCCGTCTTCTGCAGTCTgggagagtgagtgtgtgtgtgtgtgtgtgtgtgtgcgcgctcgtgtgtgtgtgtgtgcgcgctcgtgtgtgtgtgtgtgtgcgcgctcgtgtgtgtgtgtgtgtgcgctcgtgtgtgtgcgcgctcgtgtgtgtgtgtgcgtgcgcgtgcatgtgtgtgtgtgtgtgtgcgtgcgtgtggtTTGAAGCTGTAAGAATGTTTTGGGATGTGTTCCTCTATGCAGATGGACCGCGTGCGACTCGCTCAGATCGTGTCTCTAAACTCAGGATGGAGAAAGCCGATGCGGATTCGCTCTGTTCTGTTCCTGAATGTCTGTCCGGTCGAGTGCTGGGGTGTTTATCGTACGGCCCATCATGCCTTAGTGTAAAAGTGTTGGTCTTGGCTTTGGTTTCTGACACTAGTTTTGCTCACAGGCCGTTTGTGTACCTGAGAAATCCTCCATGTGACAGTTAGaatgaatatattattcatatttatagttCTCAATATAAACTAGTATTTAAAGTACTGTGTGCGCCGCATGTTTGATTTGAAGTGGGTGACGTTAGTGACGCTGACGGTTGGATCGTACCtgttctgtgtctgtgtgtcgtGTGGCACTCGTTCACCTGAATCACCAACTCAACTATCACCGGTTATCTTCAGCGATTAAGATACTTGTGTATATTCTAGTTAGCGATAGAGAAGGGAGAAGTCCTCTGGAAGTTTCTCATCCTGCAGATTGTGTTGCCAAAGTCTGTTTCACGTTTTCTCGTTAGCTTACTGCTGCGTGTCCAAACGAGTCCCACATCCAGCTCTAGTTCACACTATACTTCCTTACTAACTTGTAAATATCTTTATCCTAACCGCATTAATCAAAGGAGTGGAATAACTGCAAATTAATATGGtgagaaatatttatttcaggtttttttctttcttctgttacaGTAGTtttatgtgaattattattattattattattattattattattattattactattattttttagttGTTTGGTTTTAGTCTGCAGATTCTCATCTTTGGTCtcatttttcagtgtttggTCACATTTCTATCTTTTATATGCCTTTAAAAGCTGGCAGTGGTGTTTCCCGCTGAACCGCGAGGCTGGATCTGATCGACTGATTGTTCTGGAACAGTAACGTTTTGATATACTGTACTGTTATTTGTCACATGTATGcttttttctaacattttaacGGTTAAGGGTATCAATGCTTTGTACATCTTtattgcaatatataaaaataaaccgaAATGATAATCA

Function

GO:

id name namespace
GO:0048798 swim bladder inflation biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015377 cation molecular_function

KEGG:

id description
K10951 SLC12A2, NKCC1; solute carrier family 12 (sodium/potassium/chloride transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264794.1 True 5616 mRNA 0.49 27 17079059 17099562

Neighbor

gene id symbol gene type direction distance location
LOC122362752 LOC107665215,LOC107595393 coding upstream 9240 17067094 ~ 17069819 (+)
LOC122363001 NA coding upstream 107695 16958824 ~ 16971364 (+)
ulk3 ulk3,LOC107665498,LOC107681021,LOC107595383 coding upstream 249705 16819287 ~ 16829354 (+)
larp6a larp6,LOC107712978,LOC107595350,LOC107739963,LOC107576037,LOC103354325 coding upstream 289386 16780682 ~ 16789673 (+)
myef2 myef2,LOC107698879,LOC107739991,LOC107568149 coding upstream 360901 16705581 ~ 16718158 (+)
unc13c unc13c,LOC107554226,LOC107665324,LOC108411445 coding downstream 226404 17325966 ~ 17354848 (+)
ompa omp,ompa,LOC107735103,LOC107660685 coding downstream 325592 17425154 ~ 17425977 (+)
LOC122322924 NA coding downstream 337589 17437151 ~ 17440065 (+)
lrch3 lrch3,LOC107735844 coding downstream 357528 17457090 ~ 17482180 (+)
LOC122362636 LOC107554234,LOC107665407,LOC107713070 coding downstream 398967 17498529 ~ 17500517 (+)
G126881 NA non-coding upstream 45719 17031550 ~ 17033340 (+)
G126879 NA non-coding upstream 55689 17021386 ~ 17023370 (+)
G126875 NA non-coding upstream 61534 17015532 ~ 17017525 (+)
G126867 NA non-coding upstream 63734 17013758 ~ 17015325 (+)
G126865 NA non-coding upstream 103674 16973711 ~ 16975385 (+)
LOC122362576 NA non-coding downstream 37073 17136635 ~ 17139135 (+)
G126893 NA non-coding downstream 72443 17172005 ~ 17172305 (+)
G126903 NA non-coding downstream 157249 17256811 ~ 17257363 (+)
G126906 NA non-coding downstream 178644 17278206 ~ 17278585 (+)
G127103 NA non-coding downstream 345399 17444961 ~ 17446064 (+)
G126884 ctxn2 other upstream 1900 17074194 ~ 17077159 (+)
G126820 NA other upstream 260660 16753709 ~ 16818399 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 807792 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 1023432 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 1125406 15950982 ~ 15953653 (+)
LOC122362575 NA other downstream 30360 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 204207 17303769 ~ 17309158 (+)
G127098 NA other downstream 311123 17410685 ~ 17411593 (+)
serp1 NA other downstream 354592 17454154 ~ 17455657 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other downstream 709039 17808601 ~ 17814422 (+)

Expression


Co-expression Network