XLOC_006749 (golga5)


Basic Information

Item Value
gene id XLOC_006749
gene name golga5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33211014 ~ 33227411 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012998
GCGCACTGTTGTTATGGGTCCTTTATGTAGTTCCTGGTCCACGTCGGTCTGGATCAGAATGAGAAACGGGATAAACAGTCACCGATAATTGATCAAGATTCCCGTAGACACAGTTTCACCTGATATTCTCCCAAAAAATGCATATGGAAGATTTATTTAACGCATTCTGAGAGATCGGAGCCCCATACAGAGGATCTCAGGATGTCTTGGTTTGTTGATCTTGCCGGGAAGGCAGAGGACTTCCTGAATAAAGTGGACCAGGGTGCAGCCACTGCTTTGACAAAACCCAATCAGAAGTCCTCTCTGTCCTACAATAGCCCAGATGCTACCGATTCAACCCAGTATAATGCTGCAGCTTACAGCTCCACCCAGCAGCACCGAGACTCCATCTCTGCCTCGTCCCAAGGAACTTCCACATTCATCTCCGCAGCTGCTGGGAACATAAAGAAATCCAAAGCTACGGTTTTGGCTGGAACAGCAAACGTTTCCAGCACCACACCTTTGGGTTCCAGCAGCAAGGCGTCATCCAATTTTGTGAGGCCTAGAAAGAGTGAAGTGAACGAcgatttgctttttgacttcttaAACAGTTCAGATCCACCACAGAGCGAGAAAAAGGAAGTCAGGAGAGAAACCGTGTCGAAAGCTTTTCGCCCTACAGGGGTGTCAGCACAGAGCCAGATGCCCACTGTCTCTTTGGCCAGTGATCTGCACACAGGCCCATCGGTCACTCCGACCCCGTCGTCCACACAGGGTCTGTCCAGAAACTCTAGCCTCGGCTCTCTCTCCAACAGCTCGCACAGCGTTAAAACCGAGGACAGCTCCACTCGCGACCAAAGCCAAGCTGATGTTCCAGAGAGTTTGACTGCAGGACTGGATGATCTCGCAGATCCTCAGCCAGTGCTGGAAATTCAATCTCAAGATcttcaacagcagcagcagcagcaaggCCAAGAGCATGTGATCTCCAACCTTCGTCTCGAAAACCAGCTTCTGCGTAATGAAGTCTCCTCTCTCAACCAGGAGATGGCCTCGCTAATCCAAAGAGCCAAAGACATGCAGGAAGAGGTGAATCTCGGCAGAGCTCGTGCTGACAAGTGGAATTCGGACCAGTCTCGGGTTGATCGCACGGTTCGAGAACTTAGCTCACAGGTCGATGACCTCACAGAAGCCTTGTCAGCAAAAGACGGTCAGTTGGCGGTCTTGAAAGTGCGACTGGACGAAGCAGATCAGTTACTGAAGGCCCGAAGTTCTGCTCTTGAAGAAGCACAGAACGAGAGAGTCAGgattCTTCAGGACCACAGTGAGGGCAGCAGTCTTCACTCGCAGGCTGTACAGACACTACAGGATAGGTTAAGAGACGCAGAGGCTGCAGTGAAGAGAGAACAGGAGAGCTACAGACAGATACAGAGTGAGTTTGCGGCACGACTTGCGAAAGTGGAGGCCGAGCGTCAGACGCTGGCAGAGTCTTTAACAAATGCCGAGCGCCGGTTAACTGAAGAGAAACAGAGAGCTGAGGATCTTCAGCAACAGGCCAAAAGCTCCCGATCTGCTGCAGAGTACACCAGACAAGAGCTCCAGGACTACAAAAACAAAGCCTCGCGCATATTACAGTCTAAGGAGAAGCTGATCAACAGTTTGAAGGAGGGCTCAGGTCTAGAGGTGCTGGAGGGAGCTGGCGCTGGGGTTGAACTTGAAGAGCTGCGTCATGAAAAAGAGCTACAAAGAGAAGAGATTCAGAAGCTACAGGCACAAATACAGAGCTTGCGGACAGAGATACAGGATCTGGAAACCCAAGCGCTCACTGAGAACGAGAGCTGGAGAGAACAGCTGGCAGAGGTACAGGAACAACACGCACAGCAGATCAGAGCCAAACAGGAAATAGAGGCAGAACTGGAGAGATCCAAACAGGAACTGCAGTACATTGAGGAAGAGCATCACCGCACTAAAATTACCCTTCAGGGTCGCGTCAAAGACAGAGAAGATGAGATCCAGAAGCTTAGAAATCAGCTGACCAATAAGGCTCTGAGCAACAGCAGTCAGGCGGAGCTGGAGGGTCGTCTGCACCAGCTGACGGAGACTCTGATTCAGAAGCAGACCATGTTGGAGGCTCTGGGCACGGAGAAAAACTCACTGGTTTTTCAGCTGGAGAGGCTAGAGCAGCAGCTGAAGAGCCTGCAGGGTGGACAGAACAGCGCGTCGCACATTAACATGGCGGCCATGGAGGGACCAGGTGCTAGGCAGAGGAACACACCAATATTGTTTAGTGATGGGGATGGCCCGGTTACAGGGGTGTATGGGAAGGTTCGCAAGGCAGCCAGCACCATCGACCGCTTCAGTATACGTCTAGGAATCTTTCTAAGACGTTACCCCATGGCCAgggtatttgttattatttatatgGCACTTCTACACCTTTGGGTGATGATTGTCCTTTTGACGTACACACCAGAGATGCACCACAGTCATCCTGATGGAAGATGAAGGACTTCCAATCTGTATTAACAACTAAGAACCTGTTGTGATCAGTAAAAGTTAATAAAGGTGATACTTCAGGCTGCTGTACAGTGGCTCAATATGCATTCATCTACAATTTGCACAGACATGCTGCTGGGTGGTTTTCTCCTTTTCTCTCTCATTTGTTACGCTGTTTCTCATGCGTTTCTTCTTAATCCACTGCATCTTTGTCTGTCTTGGCTCGTATGTGTCTGAAAGCTAAAAGTTTATTGCGAGTGAAGAGAGTGACATGAAGAGAAATATTTAAGGTGTAATTTAAAGGTGTGGTTTTAATCGGTTTAAGAGTTCTCCTTTTCTTTTATTCATCTCCATTTCATGCGgatgtaatcatgattatttttgtTACAGCAAATAACAGATTGTATTCCTTACACTGAAAAGCGGATTTATCTGAATAAATATTAACACAGACATAA

Function

symbol description
golga5 Predicted to enable protein homodimerization activity. Predicted to be involved in Golgi organization and retrograde transport, vesicle recycling within Golgi. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cisterna and Golgi membrane. Is expressed in axis; hatching gland; notochord; and polster. Orthologous to human GOLGA5 (golgin A5).

GO:

id name namespace
GO:0000301 retrograde transport, vesicle recycling within Golgi biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0007030 Golgi organization biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031985 Golgi cisterna cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2749 Predicted to enable protein homodimerization activity. Predicted to be involved in Golgi organization and retrograde transport, vesicle recycling within Golgi. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cisterna and Golgi membrane. Is expressed in axis; hatching gland; notochord; and polster. Orthologous to human GOLGA5 (golgin A5).

Ensembl:

ensembl_id ENSDARG00000039279

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012998 True 2933 mRNA 0.49 13 33211014 33227411

Neighbor

gene id symbol gene type direction distance location
XLOC_006748 fbln5 coding downstream 3590 33155428 ~ 33207424 (-)
XLOC_006747 TC2N coding downstream 57125 33141279 ~ 33153889 (-)
XLOC_006746 plek2 coding downstream 76403 33123484 ~ 33134611 (-)
XLOC_006745 zfyve26 coding downstream 96080 33066605 ~ 33114934 (-)
XLOC_006744 vti1b coding downstream 156158 33040436 ~ 33054856 (-)
XLOC_006750 rtf1 coding upstream 2035 33229446 ~ 33246154 (-)
XLOC_006751 nusap1 coding upstream 24310 33251721 ~ 33256667 (-)
XLOC_006752 NA coding upstream 33720 33261131 ~ 33301170 (-)
XLOC_006753 tmem234 coding upstream 87262 33314673 ~ 33317398 (-)
XLOC_006754 si:dkey-71p21.13 coding upstream 92652 33320063 ~ 33321541 (-)
XLOC_006471 BX537274.2 misc downstream 22946109 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32384789 825904 ~ 826225 (-)
XLOC_006741 NA non-coding downstream 214518 32946711 ~ 32996496 (-)
XLOC_006738 CU019663.1 non-coding downstream 403373 32793864 ~ 32807641 (-)
XLOC_006731 NA non-coding downstream 643758 32457931 ~ 32567256 (-)
XLOC_006732 NA non-coding downstream 716142 32492067 ~ 32494872 (-)
XLOC_006730 NA non-coding downstream 755021 32069898 ~ 32455993 (-)
XLOC_006757 NA non-coding upstream 225027 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 230112 33457523 ~ 33459318 (-)
XLOC_006768 BX649403.1 non-coding upstream 1411218 34638629 ~ 34638746 (-)
XLOC_006769 BX649403.2 non-coding upstream 1416739 34644150 ~ 34644281 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07429147_07434790 GOLGA5 coding CI01000012 null 7429147 ~ 7434846 (+)