pepd (pepd)


Basic Information

Item Value
gene id pepd
gene name pepd
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 18277364 ~ 18334482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264985.1
CTGCTCCCGGTCACGTGACTCGCTCTCTCAGccgagcagcagcagcagcagcaagcaGCATGGCATCTTCGAAGCAGAAGGCGGTGTATTGGCTGGGAAACGATACTCTGAGGGTCTCGGCCGCCCTGTTTGCAGAAAACCGAGAGCGTTTGTGTCGAGGCCTGAAAGCTGAGAAGGGGTTTCAGCCTGGATCTGTGGTGCTTCTTCAAGGAGGAGAACAGAAGCAGAGATACTGCACCGACACCGACATGCTCTTCAGACAGGAGTCGTTTTTCCACTGGACCTTCGGCGTGACGGAGGCCGACTGCTACGGCGCCATCGACGTCAACTCCAAGAAATCCATCCTGTTTGTTCCCAAGCTGCCGGAGAGCTACGCCACGTGGATGGGCGAGATATACTCTCGTGAACACTTCAAGGAGAAGTACGCCATCAATGAGGTGCATCACACCACCGACATTGCTGATGTGCTGACTAAAATGAAGCCCAGCGTCCTGCTCACACTGCGGGGAGTGAACACCGATAGCGGCAGCACCTGTCGTGAAGCGTCCTTTGAAGGCATCAGCCAGTTTCAGGTGAATAATTCCCTCCTGCACCCGGTGATCGTGGAGTGtCGTTTGCTGAAGACCGACATGGAGCTGGAAGTTCTGCGCTACACCAACCGCATTTCCAGCGAAGCCCACAAAGAGGTGATGAAACGCGTGAAGGCAGGCGTGAAAGAGTATGAGATGGAGAGtctgTTCCAGCATTACTGTTATGCTCGTGGAGGGATGCGACACACTTCATACACCTGCATCTGTGGAAGTGGGAATAACTCCTCCGTCCTGCATTACGGACACGCCGGGGCTCCCAATGACAAAACCATCCAGGATGGAGACATGTGTCTGTTTGACATGGGCGGTGAGTATTACTGTTATTCCTCCGACATCACCTGCTCTTTCCCGGCCAACGGCAAGTTCACCGCAGACCAGAAAGCCATTTATGAAGCCGTGCTGAAGTCCTCCAGAGCCGTGATGGCCGCCATTAAACCAGGTGTGAAGTGGACAGACATGCATCGTCTGGCCGACCGGGTTCACCTGGAGGAGCTGGTGAAGATGGGGATCCTGCAGGGGAGCGTGGAGGAGATGCTGAAGGTGCACCTGGGCGCTGTGTTCATGCCGCACGGTCTGGGTCACCTGCTGGGCATCGACGTCCACGACGTGGGAGGATATCCAGAGGGCATCGAGCGCGTCGACGAGCCGGGGCTGAAGAGTCTGAGGATGGGCCGTGTGGTGCAGGAGCGCATGGTCCTCACGGTGGAGCCGGGAATCTATTTCATCAACCACCTGCTGGATAAAGCTCTGGGCTCCCCGGAGCAGTGCAGCTTCATCAATAACCACGTCCTGACGCGCTTCCGAGGCTTCGGCGGGGTGCGTATCGAGGATGATATCGCCGTGACGGCTGACGGCGTGGAGCTGCTGACCTGTGTTCCTCGAACCGTGGAGGAAATCGAGGCCTTCATGGCAGATGAAACATCCAAAGCCTTCAGCGCCGTCAGCAGCCAGAAACTCTGAAGAGACGACCACGACCACGACGATGATGACGACACTCCTTTTCTTCACCATATCAGATTAACCCTGTATCCTAATAAAGGAATATCTTTGATTTTTGACTCTATGAAGGGAAAGCAATCACATGACAGCCGTCGTTTGATCGTAAGCCAGCAAATAAAAGTACAGGATCGTTTATGCTTCTCATGTAGCGGCCGAGTTCAGCTCTGAACTTTGTTTGGCCTGAATTGCTCATTCATTTGCGTTATATACCGTACGCTTTTTGCAAATTTGCTTTGTgcaatgcttatttttaataaaggtcTGATTTTTCTAGCATCA

Function

symbol description
pepd Predicted to enable manganese ion binding activity and metalloaminopeptidase activity. Acts upstream of or within endocrine pancreas development and pancreas regeneration. Is expressed in blood vessel; eye; neural crest; optic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in prolidase deficiency. Orthologous to human PEPD (peptidase D).

NR:

description
xaa-Pro dipeptidase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function

KEGG:

id description
K14213 PEPD; Xaa-Pro dipeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264985.1 True 1868 mRNA 0.54 15 18277364 18334482

Neighbor

gene id symbol gene type direction distance location
LOC122362666 LOC107712581,LOC107668485,LOC107734866,LOC107659171 coding upstream 206783 17983478 ~ 18070581 (+)
LOC122362789 kiaa0355,LOC107594396,LOC107734949,LOC107668468,LOC107600920,LOC107712582 coding upstream 307903 17937030 ~ 17969461 (+)
LOC122323000 wtip,LOC107594378,LOC107600421,LOC107734993,LOC107712576,LOC107659186,LOC107662496 coding upstream 360096 17887967 ~ 17917268 (+)
pigb pigb,LOC107600388,LOC107708293 coding upstream 500387 17769658 ~ 17776977 (+)
LOC122363047 unc13c coding upstream 584130 17555210 ~ 17693234 (+)
ugt5f1 LOC107709391 coding downstream 4661 18339143 ~ 18343857 (+)
LOC122362573 LOC107668478,LOC107715830,LOC107658962,LOC107594373,LOC107553363 coding downstream 4717 18339199 ~ 18386930 (+)
hcn4 hcn4,LOC107658947,LOC107715829,LOC107553361,LOC107668476,LOC107594389 coding downstream 59121 18393603 ~ 18460809 (+)
aqp11 LOC107659225,LOC107715828,LOC107594401 coding downstream 185509 18519991 ~ 18523564 (+)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309,LOC107600345 coding downstream 209881 18544363 ~ 18546307 (+)
G127268 NA non-coding upstream 296023 17977675 ~ 17981341 (+)
G127263 NA non-coding upstream 302862 17972550 ~ 17974502 (+)
G127243 nedd4,LOC107735005,LOC107712575,LOC107659054 non-coding upstream 419215 17857012 ~ 17858149 (+)
G127242 NA non-coding upstream 421553 17854650 ~ 17855811 (+)
G127240 NA non-coding upstream 425651 17818738 ~ 17851713 (+)
G127413 NA non-coding downstream 17258 18351740 ~ 18352103 (+)
G127431 NA non-coding downstream 151375 18485857 ~ 18487271 (+)
G127434 NA non-coding downstream 157515 18491997 ~ 18518461 (+)
G127439 NA non-coding downstream 167959 18502441 ~ 18546723 (+)
G127443 clns1a,LOC107594388,LOC107579082 non-coding downstream 192647 18527129 ~ 18528342 (+)
G127292 NA other upstream 137111 18138535 ~ 18140253 (+)
G127258 NA other upstream 349199 17922928 ~ 17928165 (+)
sdr42e1 sdr42e1,LOC107712579,LOC107659233,LOC107736292,LOC107600430,LOC107579813 other upstream 390153 17883618 ~ 17887211 (+)
G127239 prtg,prtga,LOC107659194,LOC107574380,LOC107601141 other upstream 462942 17808601 ~ 17814422 (+)
serp1 NA other upstream 821707 17454154 ~ 17455657 (+)
G127456 rps3 other downstream 225481 18559963 ~ 18563152 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other downstream 311880 18646362 ~ 18652164 (+)
G127500 NA other downstream 396208 18730690 ~ 18841535 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other downstream 935129 19269611 ~ 19288556 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other downstream 1668522 20003004 ~ 20015706 (+)

Expression


Co-expression Network