zgc:162879 (zgc:162879,LOC107556259,LOC107691119,LOC107715222,LOC107690369)


Basic Information

Item Value
gene id zgc:162879
gene name zgc:162879,LOC107556259,LOC107691119,LOC107715222,LOC107690369
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 2159316 ~ 2167291 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265015.1
CTTCCTCCGTGACTATCCAATGACACACTAACTTGAGCTCAACTCGTTACAATGCGAGATAACGAGCGATCATCCAATCACTCATGCCTTCATCCGAGCTGCCTGCACGGTTTCTGCGCACCTGTTGGTGATGTACGTCTTAGATCACGGACCTTCAGCGTTCACTTTCGTCTTTTCGTCACTTCCACGTTCTCGGAGCGTTGTCTTTGTACACGGGTGTGTTTTGCGTCACCGTTTGCCTGTCCTCGTCCGGTGAAAATATGAACCAAGCCGACCTTCGGAGGCTTTTTGCGGCATGCGACGGGAATAAGTCTGGGAGAGTGGAGTACGAGGACTTCACCGGGGTCTGCCGGGAGCTGAACGTCCCTGCTGAGGAGATCAGGACTTTATTTAACAAGTTCGATCTGGACGGAGACGGGTGCATCAACTTCAACGATTTTTCGTCAAGCTTTCATGAAGTTTCCGAAGCCCTCAATCTGGCTTTGTTGGGGAACAGTCTGCAGGTTCAGAGGAGCGCTTGGGATGAGTTTGAAAACACGTTAGACGGGGATGTGGCCTTTTATTTGGGAAGACAGTGGGATGATTTGAGGGAGTTGTATGAACAGATCCACTCCGCATCAGATGAGTTATTACTGCAGCAATATGAGGATCTGATCAAGGCTCTTGTAGCTGAGAGCAAAGAGCACAGGATGGACAGTGAGCAACTCGAGACCAGTCTACGAAGGACAGAGGAACTGACCAGCAGTCGGTTAGCAGAGATGGAGGAGGACTTGCAGCTGCAACTGGCCCGCACAGAAGAAAGGGTCAGGGAAGAGGAGCAAAAGAAATTGGACGAATCCATAGCTATGCTCCAAATCAAGCACGAGAATGAACTGGCAGACCTGCAGACAACAATAGAAAGGCTCACAAAGCAATATCAAGAGGATTTGAAATTAAACAGCCCCAAGGAAGATGCCAACAAATTGAGAGCGCAGGTTCGAGATCTGATGCAGGAGAATGAGGAGCTGAGGAGTTCTCTAATGAAAGCCCAGATAAACGTCTCTGTTCTCCAAGTTGAGTTGGACAGGTTGAAGAATGCCTTCACTGACCAGAAACTCCAGCATGAGAGagAAAGCGATGACCTTAAGAAGATGGTGATGGAGTACCAGTCTTATTCCAGCCAAATAGAATTTCTCCAggaaatgaacaaaacattgtATGACAGCAATGATGGGTTACGCTCTGCTCTGAGCCAGGATAATGGCTCCTCTAAAAGACGGCTCTCACCAAAAAGTGAAGTTCCTCCTAGAAAGATGAAACCACTTCGACAGAGCACTATGAATCAGAGCGGtttCACTAATGAAGAGGACACGATAGCCCTGGTGAAGTGCTGGGCTGATAAGTACTTGGATAGTGGCGTTTCCGTTCAGACAGACGCTGAGCTGATGTCAGGCAGTGATTATGAGAGTGACGACAGCAATAACTCAGTGGAGACTGTGCATCATAGTTACTCTTGTATTCCATCTGAGCTGGAGGTGTCAGAGCTGAAGTCTGAAGCTTTGGGATCAGTAGCTCCTAGCACAGTTGCTTCAGTATCTTCCTCACTTCGGCGGCGGTTGTCTGCTTTTCCTGTCAAGCAAACCGAAGAGGACTTGCATGACACTCAAGATCTTGCTCCAGTGTATCGTCTGGTGTTGGCTGGGGATGCTGGGTCGGGAAAATCCAGCTTTTTACTACGATTGAGTCTAAATGAATTTAGAGGAGATATACAAACCACTCTTGGTGTTGACTTTCAAATCAAGAAGATGCTTGTAGATGGAGAGAAAATAAACCTTCAGATATGGGACACTGCTGGACAGGAACGGTTCCGCAGCATCGCCAGGTCTTATTTTCGCAAGGCACATGGAGTGCTATTGCTATACGATGTCACATCCGAGAGCAGTTTCCTGAATGTTCGTGAATGGGTGGAACAGATTCGGGAGTCAACGGATGATGACATCCCGATGTGTGTAATAGGAAACAAGGTAGATTTGAGGGCAGAAAGGCCAAAGGGAAGCTGTGTGAGTGCGTTCCACGGTGAAAAGCTTGCTATGGCTTATAGTGCCCTGTTCTGCGAAACAAGCGCTAAAGATGGGACGAATGTCATCGAGGCAGTTTTACATTTAGCAAGAGAAGTCAAGAAACATGCAAAACTGGGTCGGAGATCAGAGTCGAAGGTTAAGCTGAGTCTCCATAAACGGAAGAAGGCGCTGAGCAACTGCTGTGGAGTCTAAGTctttttatgcctttttaaaataactacaacCCTATCCTCTGttagaaaaatgttaataaattagttttttttctaatgcagTTAGCACTTTTAAGCAGTTTTTAGACATTTGGATGCTTCCTTGGTGTTTGTAGGCACACTGATCAAATGTATACTTGTACATATGCCAATGATCAAATTCACTTCAGggttcagtgtttatttaaatgtacttttttatgttGGAATTTAATTACTGTTGTGTTGAATGATGTTTACATGAATGTTTCtaacaacataaataaaagttttagatCTGA

Function

symbol description
zgc:162879 Predicted to enable GTP binding activity; GTPase activity; and calcium ion binding activity. Predicted to be located in perinuclear region of cytoplasm.

NR:

description
ras and EF-hand domain-containing protein-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265015.1 True 2553 mRNA 0.46 17 2159316 2167291

Neighbor

gene id symbol gene type direction distance location
sema4ba sema4ba,LOC107714785,LOC107556264,LOC107691120,LOC107715225,LOC107551463,LOC107690368 coding upstream 3813 2095553 ~ 2155503 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC107715227,LOC106514339 coding upstream 125246 2022670 ~ 2034070 (+)
ankrd34c ankrd34c,LOC107715204,LOC107691151,LOC107551450,LOC107690404,LOC107556256,LOC107714779 coding upstream 139259 2015072 ~ 2020057 (+)
LOC122323046 frmd5,LOC107562133,LOC570903,LOC108435336,LOC107556247 coding upstream 251733 1816402 ~ 1907583 (+)
malt3 LOC107690360,LOC107709807,LOC107691126 coding upstream 344019 1802361 ~ 1815297 (+)
slco3a1a slco3a1,LOC107693030,LOC107601651,LOC107690372 coding downstream 173079 2340370 ~ 2392967 (+)
st8sia2 st8sia2,LOC107693033,LOC107715201,LOC107690408,LOC107549020 coding downstream 221797 2389088 ~ 2400009 (+)
nr2f2 nr2f2,LOC107549018,LOC107690378,LOC107601645,LOC107715214 coding downstream 678752 2846043 ~ 2853173 (+)
hsf4 hsf4,LOC107596914,LOC107715602,LOC107660759,LOC107690412,LOC107583721 coding downstream 1204795 3372086 ~ 3380670 (+)
nudt21 nudt21,LOC107660760,LOC107690386,LOC107721012 coding downstream 1213731 3381022 ~ 3383654 (+)
LOC122323174 NA non-coding upstream 98091 2054520 ~ 2061225 (+)
G123643 NA non-coding upstream 238425 1919837 ~ 1920891 (+)
G123642 NA non-coding upstream 240850 1859008 ~ 1918466 (+)
G123622 NA non-coding upstream 399447 1758245 ~ 1759869 (+)
G123576 NA non-coding upstream 420184 1693116 ~ 1739132 (+)
LOC122323220 NA non-coding downstream 155298 2322589 ~ 2331573 (+)
G123860 NA non-coding downstream 170931 2338222 ~ 2403970 (+)
G123861 NA non-coding downstream 215609 2382900 ~ 2404924 (+)
LOC122322992 NA non-coding downstream 272746 2440037 ~ 2512970 (+)
G123868 rgma,LOC107690376,LOC107715612,LOC107715216,LOC107693037 non-coding downstream 278310 2445601 ~ 2449435 (+)
G123664 NA other upstream 157026 2001786 ~ 2002290 (+)
G123568 NA other upstream 587385 1565426 ~ 1571931 (+)
tmem123 NA other upstream 1104581 1045194 ~ 1054735 (+)
LOC122362993 LOC107758246,LOC107662138,LOC107657475,LOC107757244 other upstream 1335641 814751 ~ 823675 (+)
G123243 NA other upstream 2050484 108369 ~ 108832 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other downstream 39908 2207199 ~ 2240260 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other downstream 134467 2301758 ~ 2319140 (+)
chd2 chd2,LOC107690375,LOC107715217,LOC107693036,LOC107715589 other downstream 243442 2410733 ~ 2461790 (+)
tmem170a tmem170a,LOC107596918,LOC107583727 other downstream 1344666 3511957 ~ 3554690 (+)
nrn1la LOC107726468,LOC107694939,LOC107583849,LOC107596927,LOC107733575,LOC107672183 other downstream 1552597 3719888 ~ 3743756 (+)

Expression


Co-expression Network