XLOC_000675 (abca1a)


Basic Information

Item Value
gene id XLOC_000675
gene name abca1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52560549 ~ 52628407 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001142
ATGGAGGAGAGGAAAAAGGTCCGTCCATAAGAACACAAAGCACCACCAGTACAATATCGCTCGGAGAGAGTTTAAACAGCTGCTTTATCCTCTCTTTTCTAAAAGGATTTACAGTTTATATGAAATAAGGAACAATCATTAAGGAGCAAGAAATAGCGCTTCTGTAAGGCGGCACGGATAGTGTGTATCCGTGGTAAGATGGCTGTCTCCACTCAGTTGGGTTTACTGTTGTGGAAGAACTTCACCTACAGACGGAGACAGACTATTCAGCTGCTGGTCGAGATCATATGGCCACTtttcatctttttcatcttgaTATCTGTCAGACTCTACTATCCGCCATACGAGCAACATGAATGCCATTTTCCCAATAAGGCTATGCCCTCTGCAGGGACTTTACCGTGGGTTCAGGGCATCATCTGCAATGCCAACAACCCCTGCTTTCGCTACCCGACTCCAGGAGAGACGCCCGGGGTTGTGGGCAACTTCAATGACTCCATCATCTCCCGACTGTTCACCGATGCCAAGAAAATTCTCCTCTACAGCCAACAAGACAAGAGCTTCGAAGGTTTCAAAGGACTCGTTCGAGCCTTGAGAAAACTGCAGAGAAACACTGAAGGTTTCAAACTGAAGGATTTCCTCCATGATAATGAAACGCTGTCTGCCTTTCTGGAGAAAAATGCCACCCTGCCCAAGCATGCAGTGAGACAGATAGTGGAGGCCAACGTCAACTTGGAGAAGGTGCTTATTAAAGGATTCGGCGTTCATCTTACAGACCTGTGCAATTCCACGTCTCTGGAAGAGTTTGTGACTATAGCCGATAAAGACGTGTCTCAACTGACGCAAAACATCATCTGCCAGTCGCCCGCTGATTGGCTGAACAACGCAGAGCAACACTTCCTGTCCAACCTGGACTTCCTGAAGCCCATTCGGAAAGATGTCAAGTCAGACCCAAAGATCATCAAAGATGTGTCCATTGCTACAGACAGTCTGCTGGAGAGTCTGGGGGCTTTGGCAGTGGAGTTGGCGAGTATGAAGAGCTGGCGCGACATGCGGAATGAGATCCTCTACCTGACGGGCAACAGCACGCAGTCACCAAACCACATGTACCAGGCCGTGTCCCGCATCGTCTGCGGCCATCCGGAGGGTGGCGGATTAAAGATCAAGTCCCTCAACTGGTTCGAAGACAATAACTACAAAGCCCTGTTCGGAAACAATGGCAACGACAGTGACAGCGAGCCCGCATCTGTTTACGACAACTCCTCCACGCCGTACTGCAACAACCTGATGAAGGGTCTTGAGTCGAGTCCCATTTCCCGCATGATCTGGAGGGCCCTGAAACCGCTGCTCATGGGAAAGATCTTGTACACACCAGACACTCCGGCCACACAGAGGATCATACATGAGGTCAATAAGACGTTTCAGGAGCTCGGTGTACTCCGTGACCTCGGCGGCATGTGGGAAGAAATGAGACCCAAAATCTGGAACTTCATGGAGAACAGTGAGGAGATGGACCTCGTCCGGACGCTGCTCCAGAATAACGCCAGCGCTCGTTTCTTCAATGCTAAGCTGAGCGGGACAGAATGGCGCGTGGAGGATGTGTCCCGCTTCTTGTCCAAGTCTTCAGAGGACACTCGTCCACATGGGACAGCGTACACATGGAGAGAAGTGTTCAACGAGACTGACCAGGCCATACAGACCATCTCCCGCTTCATGGAGTGTGTGAACTTGGATAAGTTGGAGCCGGTGGCGAACGAGGAGCGTCTGGTCAATAAATCCATGCGTCTGCTGGATGACCGCAAGTTTTGGGCAGGAATCGTGTTTCCCGACATGCAATCCAACACGTCTGATCTGCCACTCAACGTTAACTATAAGATCCGCATGGACATCGATAACGTGGAGCGAACCAATAAGATCAAGGACGGATATTGGGATCCGGGTCCTCGAGCTGACCCATTTGAGGACTTGCGTTACATCTGGGGCGGCTTCACATACCTGCAGGACGTGATTGAGCACGGGATCATCAGAGCTCTGACCGGCAGCAAGGAAAAAACCGGAGTCTACATCCAGCAGATGCCGTATCCCTGCTATGTGGATGACATTTTCCTGCGGGTCATGAGCCGCTCCATGCCTCTCTTCATGACTCTGGCCTGGATGTACTCGGTGGCCATCATCATCAAGGGTGTGGTGTATGAAAAAGAGGCCCGACTCAAGGAGACCATGCGGATCATGGGTCTGGATAACGGCATCTTGTGGCTGAGCTGGTTCATCAGCAGCCTGATACCACTGCTCATCAGCGCCGCCCTGCTGGTGCTCATCCTGAAGATGGGGAATCTCCTGCCGTACAGCGACCCCGGCGTCATCTACTTGTTCTTGTCCTCTTTTGCGGTGGTGACCATCATGCAGTGTTTCCTGATCAGCACACTCTTCTCTCGTGCCAATCTTGCCGCCGCCTGCGGAGGCATCATTTACTTCACGCTTTACCTGCCCTATGTGCTCTGCGTCGCCTGGCAGAACTACGTGGGCTTCGGTGCCAAAATAGTAGTGAGTCTGCTGTCTCCAGTGGCGTTCGGCTTCGGCTGTGAGTATTTCGCTCTGTTTGAGGAGCAGGGTGTGGGCATCCAGTGGAGTAATCTGCTGTCCAGCCCCATGCAGGAGGACAGCTACAACCTGACCACCTCCATCTGCCTCATGCTCTTCGATTCGGTGCTCTACGCCGTCATGACCTGGTACATCGAGGCCGTCTTTCCAGGTCAGTATGGCATCCCTCGACCCTGGTACTTCCCTTTCACCAAGTCATACTGGTGCGGAGAGAAATGCGGATGGACAACATCAGTGCCAAGTAACAGGAAAGAAAACGCGGAAGCTGTGTGCATTGAGGAAGAGCCAGCCCATATAGATCCTGGTGTTTACATCGAGAACCTGATGAAGATCTACAGCAATGGTAAAGTGGCAGTGGACGGTTTGACTCTGGGCTTTTATGAGGGCCAGATCACTTCTTTCCTTGGCCACAACGGCGCTGGAAAAACCACAACCATGTCAATCCTCACCGGCCTGTTTCCACCGACTTCTGGCACTGCGTACATCCAGGGCAAAGACATCCGCACAGACCTGAATGCCATCCGCCAAAACCTGGGCGTCTGTCCTCAGCATAACGTCCTGTTCAGCATGCTGACCGTGGAGGAGCACATCTGGTTTTATGCGCGTCTGAAGGGTTTGTCTGCGGAGAAGGTGAAGTCTGAGATGGAGCAGATCGTGATGGACCTCGGCCTTCCTCATAAACGCACATCTCGCTCCAACCAGCTCTCAGGAGGAATGCAGAGGAAGTTATCAGTCGCGCTGGCCTTCGTCGGAGGCTCAAAAGTGGTGATTCTGGATGAACCGACTGCTGGAGTTGATCCTTACGCCCGCCGTGGCATCTGGGACCTGCTGCTGAAATACCGCCAAGGTCGCACCATCATCCTGTCCACACACCACATGGATGAAGCCGATATACTGGGCGACCGCATCGCCATCATCTCTCATGGCAAGCTGTGCTGCGTGGGCTCCTCTCTGTTCCTCAAGACTCAGCTGGGCACGGGTTACTACCTGACGCTGGTCAAGAAAGACTTCGATCTGTCCGCCAGCTCCTGCCGCACCTCCAGCAGCACGGTCTCCTACTCCAAGGGAAGCCTCAAGAAGgaTGACAGCGTATCTGAGAGCAGTTCTGATGCCGGACTGGGCAGCGACCATGAAAGCGAAACCACCACCATCGACATCTCCTTGATCTCCAATGTGATCTTCAAGCACGTTCCTACAGCCAGACTGGTGGAGGATCTCGGCCACGAAATCACGTACGTTCTGCCATATGAATCTGCCAAAGATGGAGCATTCGTGGAGCTTTTCCACGAGATCGACGACCGGCTCACAGACCTCAGCATCTCCAGCTACGGCATCTCGGACACCACTCTCGAAGAGATTTTCCTGAAAGTGGCTGAGGACTGCGGTGTGGATGCTGAAACCTCAGACGGGACTCTGCCTGCACGCAGGAACCGCAGACATGCATTCGGGGACCATCAGAGCTGCTTGAAGCCTTTTACTGAAGACGACTTTGATTTCAACGACTCTGAAGGGGATCCAGAGTCTCGTGAGACTGACTGGTTGGATGGTGCTGATGGTAAAGGCTCGTATCAGGTGAAGGGCTGGAGTCTGAAGCGGCAGCAGTTTGTGGCTTTGCTCTGGAAACGTTTACTGTACGCCCGACGCTCACGCAAAGGTTTCTTTGCTCAGATTGTGCTTCCCGCTGTGTTCGTGTGCATCGCTCTGGTCTTCAGCCTCATCGTTCCTCCTTTCGGGAAATATCCCAGCCTCGCTCTGGAGCCCAGCATGTATGAGGAGCAGTTCACCTTTATCAGTAATGACGCACCAgaagacagacacacaaacaggCTGCTTGATGCTCTGAAGGACAGTCCGGCTTATACTGACCAGTGCACAGATGGGAAAAACACAGCTAGCAGATCGTGTCCGATTAAAGATGGAGAATGGCTGGTTCCAGAGGTTACCGAGAGCATTGAGGCAATATTCCTGAATGGAAACTGGAGTATGGAAAACCCTTCTCCTCTGTGTGAGTGCAGCTGTGAAGGACGGAAAAAGATGCTTCCGGAGTGTCCGCCTGGAGCAGGAGGCCTTCCACCGCCTCAGATTAAAGTCACCCATGATGAAACCCTGCAGAATCTGTCTGGAAGAAACATTTCAGACTATTTGGTGAAAACATACGCACAGATTATTGGGAAAAGTTTGAAGAACAAGCTCTGGGTCAACGAATTCAGATATGGTGGCTTCTCATTGGGTGCACGAAACACACAGGCTCTCCCACCTGGCGATGAGCTCACTGATGCCATCTCTcacatccgcagccgcttcagtCTTGAGTCGGGCACCGCAGCCGACCGCTTTCTGGGAAGCCTGTCAACTTTTATCCGAGGTCTGGATACCAATAACAATGTGAAGATCTGGTTCAATAATAAAGGCTGGCACAGTATCGGATCATTCCTCAACGTCATGAACAATGCCGTCCTGCGTGCTAATCTTCCTCCCGGCCTGGATCGCTCCAAATTTGGCATCAACGCATTTAACCATCCACTCAACCTCACCAAAGAGCAGCTCTCGCATGTGGCACTAATGACCACCTCGGTGGATGTGCTGGTGTCCATCTGCGTCATCTTCGCCATGTCCTTCGTTCCAGCCAGTTTCGTGGTGTTCCTCATCCAGGAGAGAGTGAATAAAGCCAAACACATGCAGTTCATCAGCGGAGTGCAGCCGTTTCTCTACTGGCTGGCCAACTTTGTCTGGGACATGTGCAACTACATTGTCCCGGCGACTCTGGTGATCATCATCTTCGTCTGTTTCCAACAAGAGGCATATGTGTCTTCGACAAACCTGCCGGTTCTTGCTCTTCTGCTGCTTCTGTATGGATGGTCCATAACGCCCCTGATGTACCCAGCTTCATTCTTCTTCAAGATCCCAAGTACAGCATATGTGGTTCTGACCAGCGTCAACATCCTCATTGGGATAAACGGCAGCGTATCCACATTCGTCCTGGAGCTTTTCGGCAGCAATGAGATCGGCGGCATCAATGACATCTTGAAGAACGTGTTTCTGATCTTCCCTCATTTCTGTCTGGGTCGAGGACTCATTGATATGGTGAAGAACCAAGCTATGGCTGACGCGCTGGAGCGATTCGGAGAGAATCGTTTCCGCTCTCCTCTGGCGTGGGACATGGTGGGCAAGAATCTGTTCGCTATGGCCATCGAGGGCGTGATTTTCTTCAGCATCACCGTCCTCATCCAGTACCGCTTCTGCATTAAGGCCAGGTCACTTAGCACTAAGCTGAAGCCAATCGGAGAGGAGGATGAGGACGTAGCCCGAGAGAGGCAAAGGATTCTGGGAGGAGGAGGACAGACTGATATCCTGGAGCTCAGGCAGCTCACCAAGGTGTATAAGAGGAAGCAGAAGCCAGCTGTAGACAGACTGTGTGTGGGAATCCCACCTGGAGAGTGTTTTGGGTTGCTGGGTGTGAATGGAGCCGGAAAGACGAGCACCTTCAAGATGCTAACCGGAGACTCTGTGGTCACCAGCGGAGAGGCCTACTTAGCAGGAAACagCGTGCTGACGGAGATTGATGAAGTGCATCAGAATATGGGCTACTGCCCGCAGTTTGATGCCATCAATGACCTGCTGACGGGCAGAGAGCATCTGGAGTTTTATGCCATCCTGCGTGGCGTCCCTGAGAAAGAAGTGTGCAAGGTCGCAGATTGGGGCATCCGCAAACTGGGCCTGATGAAGTATGTGGACAAAGCAGCAGGAAGCTACAGCGGAGGAAACATGAGGAAGCTTTCCACCGCCATGGCGCTCATTGGAGGACCGCCGGTGGTGTTCTTGGACGAACCCACCACTGGGATGGACCCCAAAGCACGGCGGGCCCTGTGGAACTGCATCCTCAGCATCATTAAAGAGGGACGCTCCGTCGTGCTGACCTCACACAGTATGGAGGAATGTGAAGCTCTTTGCACTCGGATGGCCATCATGGTGAACGGCAGGTTCCGCTGTCTGGGCAGTGTGCAGCATTTAAAGAACAAGTTTGGTGACGGGTACACCATCATCCTGCGGGTGGCAGGCGCCGATCCGCGGCTGGAGCCGGTGATGGAGTTCATCGAGCGGGAGCTGCCGGGCAGTACGCTGAAGGAGAAACACCGAAACATGCTGCAGTACCAGCTGTCCTCATCCCTGACCTCCCTCGCTCGCATCTTCAACATCCTctccaagaacaaagagcagCTCCACATCGAGGACTACTCCGTCTCACAGACCACTTTAGACCAAGTTTTTGTCAATTTTGCCAAGGACCAAAGTGACGAGGACCACTTAAAAGACATTTCCATGAACAAAAATGATGCCGTTGTGGACATTTCGAAACTGAACGCCTTCCTCACAGACGAGAAGGCCAAAGAGACAGTGGTGTGATCTGGTTACAAAAACCTTCACGGGACTAGTGTGTCATTTTTTGTActactttttagttttttgttgtatttcagcagtgtgtttgtgtgcccgGAAATGGGCGCTGGACCTAAAACACACACTACTGAAACAAACCAATGCAAATCAATGCAAAAAGAGAAGAAGATTGGAGTAAACACTGAGGAAAGTCGAGCCTGGCGCTCACCACTCCCTCATGGTGAACTCAATGAAACTTGAAGCTTTTCGCTCCACAATCGGTGAATGTTCAATCGACGAAAGACGTCCGCGGAGTTTCTTTCGAGAATCAACGAAACACTGCCAATGAGATCCAGTTCAGGGCCGAAGTTCATCTCCTCATCTAACGCAGGCTTCAAAACACTTTGCATTTCAGCAACTATTCTTCTAcgttatttttttagatatatgCATTTTGAAACTATACTCAAGTGATTTTGTTTTCCGATGTGCAATGTTTCACTATTGTTGTCAAGTGTTTTGAAAGTGTGGTGCCTTGAAACAACACTCCGCTATTGGACAGCAGCCGTAGAGCGCGCACTCTCAGTGGGGTCTTTATCTAACGTCTCATGTGACGACAGAGCGGACGGCTTTCGGAGTTTATTGCATGCTTTACATGGATGCCGTGTTTAGGACGCCATCGTAAGCTCAAGCATGTTGTAGCTTCATTACACTGAAGTATTTTCGCGTGGGTATCAACGGATGGTCGCTGACTTTCGGCGGGAATTGTTTTTTTCGTGTGCGAAACAGGCAGAAGTTCGTATCGTGAATCTGTTCCGAAGCAATTCAAGTGTCCGTGCCAAAACCAGGTCAAGTGGTTCAATATTTTAGCGAAATGATCATATTATAGAGCAGTGttgaatattttttgttgtcTTGAACTAAAACAAGAGTTTCCTTGTACAGTAAGGCCTGGAGAGACATCCGTAGGCCTCTGATacagatttaaagggacagtacactgAAAACAAAAAGATGATACTGCCATCGTTTACTTTCTGTCGacgatatttcgaagaatgtctctctttaacttccatagtaattgtagCTGCATATAGTTCCATTGTTGGTTCTGACGCATTTATTCCTTGAACAGTttgataataaaatgaaatgtcctTACCTTTAAAAAGAAATTTGTATATTCCAATCCGTTTATTGTCAATTTAGtcaaaatttaaaaagtaaacattaaaattaaGTATGGGTGACGTaaaactgatgtttcgacacagtgttTAATCTCGAAGTGCAAGTATTCCGAAACACTGCatcgaagcatgatccgaaacacccaggtcacgtgagtAATGTGatccaaaacacccaggtcacatgactaaggtgattcgtAACACCCAGATCACCTAACTAATGTGATTTGAAACacacaggtcacatgactaaggtgattcgtAACACCTAGATCGCCTAACTAATGTGATTTGAAACacacaggtcatgtgactaaggtgattcgtaACACCCAGGTCACTTAACTAAGGTGATTCgtaacacccaggtcatgtgagtAATGTgcttcgaaacacccaggtcacatgactaaggttATTCGTAACacacaggtcacgtgactaaggtgattcgaaacatcCAGGTCACATGACTGAGGTTATTCgtaacacccaggtcacgtgactaaggtgattcgaaacatcCAGGTCACATGACTGAGGTTATTCGTAACACCCAGGTCAGGTGActgagcaatacacaaatatgacCACTAGGTGTAACTCTAGAGACGGGTTTCAAAACGTTTCGaggcttcgacacatttgctatcatgaagcctcgctttgctcACTACTAATCAATAAAAACATACTCAAGTCCATCACGGTCAAAAAGTACGTTTGACCTTCTTCCATTCCCCGCAGGTCATCGCTAGGAGAGCATAACTACATTATACACCATCTAGTGGTGTGAAAGAAAATTACAACCAAAAAAATAAAGGCTCCTACAGTAGTTATGTTTTTCTGCTATGGTAGTCGATGGATGTCAGGgagcagcattcttcaaaatatcttcttttattttcGGCAAAATAAAGAAACCACTCgatggagagtaaatgatgaggccattttcttttttttgtgcgTGAACTGTCCTTTTATTAACTCAGGATGTGCCTCTTTATCCTGTGTAAACGGTTTGTTTAGGTTTATTTGACCACTTTTACCATCGTGACCAGTGCTCTCTACAGCACCGTTGTTGATCGCCTACAGCGAGAAGTGACCAAACGCAATGAGGTGCTACTGATTGAGTAGATTTTCCAAATCTTTGAGGTGCTGTTTGGTCAAACACCTTCAGAAATTAGACAACAATCCTTAATGCACATTTAACGACGTGGAAGAAGAAAcgaagaagaagaaataaaactaGTATTGTCTTTGGTCCAAATCTGAAGCACTTTATAGCAATGTTAAACTGCTCTCGATGGTCATCATTCACAAACGGGatgttttctgtttaatgaaagATTAATAGGCTATTTTAAAATGTCCCGCCATGGCCATTATTTTCTGTGTTACGATGTATGTGTTtacatttgaaatattaaaaaactatttcagTCA
>TCONS_00001143
GCGGCACGGATAGTGTGTATCCGTGGTAAGATGGCTGTCTCCACTCAGTTGGGTTTACTGTTGTGGAAGAACTTCACCTACAGACGGAGACAGACTATTCAGCTGCTGGTCGAGATCATATGGCCACTtttcatctttttcatcttgaTATCTGTCAGACTCTACTATCCGCCATACGAGCAACATGAATGTAAGATGGATTTATCACAATACAACTCACTTGTGTCTTTCTTGTCCAAAACTACAAACTCTTATATAAACCAAATGTAACCCTGGAGCACAACAACTTAAGTCTTAATTACAAGTCTTAAGTTAAGTCCTAAGTCTTAATCACGAGTCTTAAGGTGTAGGAATAACCAAAAATACATTGCAATGATCAAAATGAACGATTTTGTTTACATGCCAAAGTAAAGATCTGCTCTGATAACTTTTAATGTTGGGAAGTAAGAgtaatttttattgacatttgtagTAGTTTGAAACCATACACAAcatgactaaagtcttgtcattgaccacagttgtaagagcaacaaataataataacttgacttctagttgatcaattggaaaagtggcagaaggtagatttgtttgatgaatcatctgttgatctgcatcccaatcatcacaaatactgcagaagtcctACTGGAACACACATAAACCCAAGATTCCCActgaaattagtcaagtt
>TCONS_00001144
ATGGCTGTCTCCACTCAGTTGGGTTTACTGTTGTGGAAGAACTTCACCTACAGACGGAGACAGACTATTCAGCTGCTGGTCGAGATCATATGGCCACTtttcatctttttcatcttgaTATCTGTCAGACTCTACTATCCGCCATACGAGCAACATGAATGCCATTTTCCCAATAAGGCTATGCCCTCTGCAGGGACTTTACCGTGGGTTCAGGGCATCATCTGCAATGCCAACAACCCCTGCTTTCGCTACCCGACTCCAGGAGAGACGCCCGGGGTTGTGGGCAACTTCAATGACTCCATCATCTCCCGACTGTTCACCGATGCCAAGAAAATTCTCCTCTACAGCCAACAAGACAAGAGCTTCGAAGGTTTCAAAGGACTCGTTCGAGCCTTGAGAAAACTGCAGAGAAACACTGAAGGTTTCAAACTGAAGGATTTCCTCCATGATAATGAAACGCTGTCTGCCTTTCTGGAGAAAAATGCCACCCTGCCCAAGCATGCAGTGAGACAGATAGTGGAGGCCAACGTCAACTTGGAGAAGGTGCTTATTAAAGGATTCGGCGTTCATCTTACAGACCTGTGCAATTCCACGTCTCTGGAAGAGTTTGTGACTATAGCCGATAAAGACGTGTCTCAACTGACGCAAAACATCATCTGCCAGTCGCCCGCTGATTGGCTGAACAACGCAGAGCAACACTTCCTGTCCAACCTGGACTTCCTGAAGCCCATTCGGAAAGATGTCAAGTCAGACCCAAAGATCATCAAAGATGTGTCCATTGCTACAGACAGTCTGCTGGAGAGTCTGGGGGCTTTGGCAGTGGAGTTGGCGAGTATGAAGAGCTGGCGCGACATGCGGAATGAGATCCTCTACCTGACGGGCAACAGCACGCAGTCACCAAACCACATGTACCAGGCCGTGTCCCGCATCGTCTGCGGCCATCCGGAGGGTGGCGGATTAAAGATCAAGTCCCTCAACTGGTTCGAAGACAATAACTACAAAGCCCTGTTCGGAAACAATGGCAACGACAGTGACAGCGAGCCCGCATCTGTTTACGACAACTCCTCCACGCCGTACTGCAACAACCTGATGAAGGGTCTTGAGTCGAGTCCCATTTCCCGCATGATCTGGAGGGCCCTGAAACCGCTGCTCATGGGAAAGATCTTGTACACACCAGACACTCCGGCCACACAGAGGATCATACATGAGGTCAATAAGACGTTTCAGGAGCTCGGTGTACTCCGTGACCTCGGCGGCATGTGGGAAGAAATGAGACCCAAAATCTGGAACTTCATGGAGAACAGTGAGGAGATGGACCTCGTCCGGACGCTGCTCCAGAATAACGCCAGCGCTCGTTTCTTCAATGCTAAGCTGAGCGGGACAGAATGGCGCGTGGAGGATGTGTCCCGCTTCTTGTCCAAGTCTTCAGAGGACACTCGTCCACATGGGACAGCGTACACATGGAGAGAAGTGTTCAACGAGACTGACCAGGCCATACAGACCATCTCCCGCTTCATGGAGTGTGTGAACTTGGATAAGTTGGAGCCGGTGGCGAACGAGGAGCGTCTGGTCAATAAATCCATGCGTCTGCTGGATGACCGCAAGTTTTGGGCAGGAATCGTGTTTCCCGACATGCAATCCAACACGTCTGATCTGCCACTCAACGTTAACTATAAGATCCGCATGGACATCGATAACGTGGAGCGAACCAATAAGATCAAGGACGGATATTGGGATCCGGGTCCTCGAGCTGACCCATTTGAGGACTTGCGTTACATCTGGGGCGGCTTCACATACCTGCAGGACGTGATTGAGCACGGGATCATCAGAGCTCTGACCGGCAGCAAGGAAAAAACCGGAGTCTACATCCAGCAGATGCCGTATCCCTGCTATGTGGATGACATTTTCCTGCGGGTCATGAGCCGCTCCATGCCTCTCTTCATGACTCTGGCCTGGATGTACTCGGTGGCCATCATCATCAAGGGTGTGGTGTATGAAAAAGAGGCCCGACTCAAGGAGACCATGCGGATCATGGGTCTGGATAACGGCATCTTGTGGCTGAGCTGGTTCATCAGCAGCCTGATACCACTGCTCATCAGCGCCGCCCTGCTGGTGCTCATCCTGAAGATGGGGAATCTCCTGCCGTACAGCGACCCCGGCGTCATCTACTTGTTCTTGTCCTCTTTTGCGGTGGTGACCATCATGCAGTGTTTCCTGATCAGCACACTCTTCTCTCGTGCCAATCTTGCCGCCGCCTGCGGAGGCATCATTTACTTCACGCTTTACCTGCCCTATGTGCTCTGCGTCGCCTGGCAGAACTACGTGGGCTTCGGTGCCAAAATAGTAGTGAGTCTGCTGTCTCCAGTGGCGTTCGGCTTCGGCTGTGAGTATTTCGCTCTGTTTGAGGAGCAGGGTGTGGGCATCCAGTGGAGTAATCTGCTGTCCAGCCCCATGCAGGAGGACAGCTACAACCTGACCACCTCCATCTGCCTCATGCTCTTCGATTCGGTGCTCTACGCCGTCATGACCTGGTACATCGAGGCCGTCTTTCCAGGTCAGTATGGCATCCCTCGACCCTGGTACTTCCCTTTCACCAAGTCATACTGGTGCGGAGAGAAATGCGGATGGACAACATCAGTGCCAAGTAACAGGAAAGAAAACGCGGAAGCTGTGTGCATTGAGGAAGAGCCAGCCCATATAGATCCTGGTGTTTACATCGAGAACCTGATGAAGATCTACAGCAATGGTAAAGTGGCAGTGGACGGTTTGACTCTGGGCTTTTATGAGGGCCAGATCACTTCTTTCCTTGGCCACAACGGCGCTGGAAAAACCACAACCATGTCAATCCTCACCGGCCTGTTTCCACCGACTTCTGGCACTGCGTACATCCAGGGCAAAGACATCCGCACAGACCTGAATGCCATCCGCCAAAACCTGGGCGTCTGTCCTCAGCATAACGTCCTGTTCAGCATGCTGACCGTGGAGGAGCACATCTGGTTTTATGCGCGTCTGAAGGGTTTGTCTGCGGAGAAGGTGAAGTCTGAGATGGAGCAGATCGTGATGGACCTCGGCCTTCCTCATAAACGCACATCTCGCTCCAACCAGCTCTCAGGAGGAATGCAGAGGAAGTTATCAGTCGCGCTGGCCTTCGTCGGAGGCTCAAAAGTGGTGATTCTGGATGAACCGACTGCTGGAGTTGATCCTTACGCCCGCCGTGGCATCTGGGACCTGCTGCTGAAATACCGCCAAGGTCGCACCATCATCCTGTCCACACACCACATGGATGAAGCCGATATACTGGGCGACCGCATCGCCATCATCTCTCATGGCAAGCTGTGCTGCGTGGGCTCCTCTCTGTTCCTCAAGACTCAGCTGGGCACGGGTTACTACCTGACGCTGGTCAAGAAAGACTTCGATCTGTCCGCCAGCTCCTGCCGCACCTCCAGCAGCACGGTCTCCTACTCCAAGGGAAGCCTCAAGAAGgaTGACAGCGTATCTGAGAGCAGTTCTGATGCCGGACTGGGCAGCGACCATGAAAGCGAAACCACCACCATCGACATCTCCTTGATCTCCAATGTGATCTTCAAGCACGTTCCTACAGCCAGACTGGTGGAGGATCTCGGCCACGAAATCACGTACGTTCTGCCATATGAATCTGCCAAAGATGGAGCATTCGTGGAGCTTTTCCACGAGATCGACGACCGGCTCACAGACCTCAGCATCTCCAGCTACGGCATCTCGGACACCACTCTCGAAGAGATTTTCCTGAAAGTGGCTGAGGACTGCGGTGTGGATGCTGAAACCTCAGACGGGACTCTGCCTGCACGCAGGAACCGCAGACATGCATTCGGGGACCATCAGAGCTGCTTGAAGCCTTTTACTGAAGACGACTTTGATTTCAACGACTCTGAAGGGGATCCAGAGTCTCGTGAGACTGACTGGTTGGATGGTGCTGATGGTAAAGGCTCGTATCAGGTGAAGGGCTGGAGTCTGAAGCGGCAGCAGTTTGTGGCTTTGCTCTGGAAACGTTTACTGTACGCCCGACGCTCACGCAAAGGTTTCTTTGCTCAGATTGTGCTTCCCGCTGTGTTCGTGTGCATCGCTCTGGTCTTCAGCCTCATCGTTCCTCCTTTCGGGAAATATCCCAGCCTCGCTCTGGAGCCCAGCATGTATGAGGAGCAGTTCACCTTTATCAGTAATGACGCACCAgaagacagacacacaaacaggCTGCTTGATGCTCTGAAGGACAGTCCGGCTTATACTGACCAGTGCACAGATGGGAAAAACACAGCTAGCAGATCGTGTCCGATTAAAGATGGAGAATGGCTGGTTCCAGAGGTTACCGAGAGCATTGAGGCAATATTCCTGAATGGAAACTGGAGTATGGAAAACCCTTCTCCTCTGTGTGAGTGCAGCTGTGAAGGACGGAAAAAGATGCTTCCGGAGTGTCCGCCTGGAGCAGGAGGCCTTCCACCGCCTCAGATTAAAGTCACCCATGATGAAACCCTGCAGAATCTGTCTGGAAGAAACATTTCAGACTATTTGGTGAAAACATACGCACAGATTATTGGGAAAAGTTTGAAGAACAAGCTCTGGGTCAACGAATTCAGATATGGTGGCTTCTCATTGGGTGCACGAAACACACAGGCTCTCCCACCTGGCGATGAGCTCACTGATGCCATCTCTcacatccgcagccgcttcagtCTTGAGTCGGGCACCGCAGCCGACCGCTTTCTGGGAAGCCTGTCAACTTTTATCCGAGGTCTGGATACCAATAACAATGTGAAGATCTGGTTCAATAATAAAGGCTGGCACAGTATCGGATCATTCCTCAACGTCATGAACAATGCCGTCCTGCGTGCTAATCTTCCTCCCGGCCTGGATCGCTCCAAATTTGGCATCAACGCATTTAACCATCCACTCAACCTCACCAAAGAGCAGCTCTCGCATGTGGCACTAATGACCACCTCGGTGGATGTGCTGGTGTCCATCTGCGTCATCTTCGCCATGTCCTTCGTTCCAGCCAGTTTCGTGGTGTTCCTCATCCAGGAGAGAGTGAATAAAGCCAAACACATGCAGTTCATCAGCGGAGTGCAGCCGTTTCTCTACTGGCTGGCCAACTTTGTCTGGGACATGTGCAACTACATTGTCCCGGCGACTCTGGTGATCATCATCTTCGTCTGTTTCCAACAAGAGGCATATGTGTCTTCGACAAACCTGCCGGTTCTTGCTCTTCTGCTGCTTCTGTATGGATGGTCCATAACGCCCCTGATGTACCCAGCTTCATTCTTCTTCAAGATCCCAAGTACAGCATATGTGGTTCTGACCAGCGTCAACATCCTCATTGGGATAAACGGCAGCGTATCCACATTCGTCCTGGAGCTTTTCGGCAGCAATGAGATCGGCGGCATCAATGACATCTTGAAGAACGTGTTTCTGATCTTCCCTCATTTCTGTCTGGGTCGAGGACTCATTGATATGGTGAAGAACCAAGCTATGGCTGACGCGCTGGAGCGATTCGGAGAGAATCGTTTCCGCTCTCCTCTGGCGTGGGACATGGTGGGCAAGAATCTGTTCGCTATGGCCATCGAGGGCGTGATTTTCTTCAGCATCACCGTCCTCATCCAGTACCGCTTCTGCATTAAGGCCAGGTCACTTAGCACTAAGCTGAAGCCAATCGGAGAGGAGGATGAGGACGTAGCCCGAGAGAGGCAAAGGATTCTGGGAGGAGGAGGACAGACTGATATCCTGGAGCTCAGGCAGCTCACCAAGGTGTATAAGAGGAAGCAGAAGCCAGCTGTAGACAGACTGTGTGTGGGAATCCCACCTGGAGAGTGTTTTGGGTTGCTGGGTGTGAATGGAGCCGGAAAGACGAGCACCTTCAAGATGCTAACCGGAGACTCTGTGGTCACCAGCGGAGAGGCCTACTTAGCAGGAAACagCGTGCTGACGGAGATTGATGAAGTGCATCAGAATATGGGCTACTGCCCGCAGTTTGATGCCATCAATGACCTGCTGACGGGCAGAGAGCATCTGGAGTTTTATGCCATCCTGCGTGGCGTCCCTGAGAAAGAAGTGTGCAAGGTCGCAGATTGGGGCATCCGCAAACTGGGCCTGATGAAGTATGTGGACAAAGCAGCAGGAAGCTACAGCGGAGGAAACATGAGGAAGCTTTCCACCGCCATGGCGCTCATTGGAGGACCGCCGGTGGTGTTCTTGGACGAACCCACCACTGGGATGGACCCCAAAGCACGGCGGGCCCTGTGGAACTGCATCCTCAGCATCATTAAAGAGGGACGCTCCGTCGTGCTGACCTCACACAGTATGGAGGAATGTGAAGCTCTTTGCACTCGGATGGCCATCATGGTGAACGGCAGGTTCCGCTGTCTGGGCAGTGTGCAGCATTTAAAGAACAAGTTTGGTGACGGGTACACCATCATCCTGCGGGTGGCAGGCGCCGATCCGCGGCTGGAGCCGGTGATGGAGTTCATCGAGCGGGAGCTGCCGGGCAGTACGCTGAAGGAGAAACACCGAAACATGCTGCAGTACCAGCTGTCCTCATCCCTGACCTCCCTCGCTCGCATCTTCAACATCCTctccaagaacaaagagcagCTCCACATCGAGGACTACTCCGTCTCACAGACCACTTTAGACCAAGTTTTTGTCAATTTTGCCAAGGACCAAAGTGACGAGGACCACTTAAAAGACATTTCCATGAACAAAAATGATGCCGTTGTGGACATTTCGAAACTGAACGCCTTCCTCACAGACGAGAAGGCCAAAGAGACAGTGGTGTGATCTGGTTACAAAAACCTTCACGGGACTAGTGTGTCATTTTTTGTActactttttagttttttgttgtatttcagcagtgtgtttgtgtgcccgGAAATGGGCGCTGGACCTAAAACACACACTACTGAAACAAACCAATGCAAATCAATGCAAAAAGAGAAGAAGATTGGAGTAAACACTGAGGAAAGTCGAGCCTGGCGCTCACCACTCCCTCATGGTGAACTCAATGAAACTTGAAGCTTTTCGCTCCACAATCGGTGAATGTTCAATCGACGAAAGACGTCCGCGGAGTTTCTTTCGAGAATCAACGAAACACTGCCAATGAGATCCAGTTCAGGGCCGAAGTTCATCTCCTCATCTAACGCAGGCTTCAAAACACTTTGCATTTCAGCAACTATTCTTCTAcgttatttttttagatatatgCATTTTGAAACTATACTCAAGTGATTTTGTTTTCCGATGTGCAATGTTTCACTATTGTTGTCAAGTGTTTTGAAAGTGTGGTGCCTTGAAACAACACTCCGCTATTGGACAGCAGCCGTAGAGCGCGCACTCTCAGTGGGGTCTTTATCTAACGTCTCATGTGACGACAGAGCGGACGGCTTTCGGAGTTTATTGCATGCTTTACATGGATGCCGTGTTTAGGACGCCATCGTAAGCTCAAGCATGTTGTAGCTTCATTACACTGAAGTATTTTCGCGTGGGTATCAACGGATGGTCGCTGACTTTCGGCGGGAATTGTTTTTTTCGTGTGCGAAACAGGCAGAAGTTCGTATCGTGAATCTGTTCCGAAGCAATTCAAGTGTCCGTGCCAAAACCAGGTCAAGTGGTTCAATATTTTAGCGAAATGATCATATTATAGAGCAGTGttgaatattttttgttgtcTTGAACTAAAACAAGAGTTTCCTTGTACAGTAAGGCCTGGAGAGACATCCGTAGGCCTCTGATacagatttaaagggacagtacactgAAAACAAAAAGATGATACTGCCATCGTTTACTTTCTGTCGacgatatttcgaagaatgtctctctttaacttccatagtaattgtagCTGCATATAGTTCCATTGTTGGTTCTGACGCATTTATTCCTTGAACAGTttgataataaaatgaaatgtcctTACCTTTAAAAAGAAATTTGTATATTCCAATCCGTTTATTGTCAATTTAGtcaaaatttaaaaagtaaacattaaaattaaGTATGGGTGACGTaaaactgatgtttcgacacagtgttTAATCTCGAAGTGCAAGTATTCCGAAACACTGCatcgaagcatgatccgaaacacccaggtcacgtgagtAATGTGatccaaaacacccaggtcacatgactaaggtgattcgtAACACCCAGATCACCTAACTAATGTGATTTGAAACacacaggtcacatgactaaggtgattcgtAACACCTAGATCGCCTAACTAATGTGATTTGAAACacacaggtcatgtgactaaggtgattcgtaACACCCAGGTCACTTAACTAAGGTGATTCgtaacacccaggtcatgtgagtAATGTgcttcgaaacacccaggtcacatgactaaggttATTCGTAACacacaggtcacgtgactaaggtgattcgaaacatcCAGGTCACATGACTGAGGTTATTCgtaacacccaggtcacgtgactaaggtgattcgaaacatcCAGGTCACATGACTGAGGTTATTCGTAACACCCAGGTCAGGTGActgagcaatacacaaatatgacCACTAGGTGTAACTCTAGAGACGGGTTTCAAAACGTTTCGaggcttcgacacatttgctatcatgaagcctcgctttgctcACTACTAATCAATAAAAACATACTCAAGTCCATCACGGTCAAAAAGTACGTTTGACCTTCTTCCATTCCCCGCAGGTCATCGCTAGGAGAGCATAACTACATTATACACCATCTAGTGGTGTGAAAGAAAATTACAACCAAAAAAATAAAGGCTCCTACAGTAGTTATGTTTTTCTGCTATGGTAGTCGATGGATGTCAGGgagcagcattcttcaaaatatcttcttttattttcGGCAAAATAAAGAAACCACTCgatggagagtaaatgatgaggccattttcttttttttgtgcgTGAACTGTCCTTTTATTAACTCAGGATGTGCCTCTTTATCCTGTGTAAACGGTTTGTTTAGGTTTATTTGACCACTTTTACCATCGTGACCAGTGCTCTCTACAGCACCGTTGTTGATCGCCTACAGCGAGAAGTGACCAAACGCAATGAGGTGCTACTGATTGAGTAGATTTTCCAAATCTTTGAGGTGCTGTTTGGTCAAACACCTTCAGAAATTAGACAACAATCCTTAATGCACATTTAACGACGTGGAAGAAGAAAcgaagaagaagaaataaaactaGTATTGTCTTTGGTCCAAATCTGAAGCACTTTATAGCAATGTTAAACTGCTCTCGATGGTCATCATTCACAAACGGGatgttttctgtttaatgaaagATTAATAGGCTATTTTAAAATGTCCCGCCATGGCCATTATTTTCTGTGTTACGATGTATGTGTTtacatttgaaatattaaaaaactatttcagTCA

Function

symbol description
abca1a Predicted to enable ATPase-coupled transmembrane transporter activity; phosphatidylcholine floppase activity; and phosphatidylserine floppase activity. Acts upstream of or within regulation of cholesterol efflux and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including blood vessel; central nervous system; neural tube; pleuroperitoneal region; and segmental plate. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; hypolipoproteinemia (multiple); obesity; and type 2 diabetes mellitus. Orthologous to human ABCA1 (ATP binding cassette subfamily A member 1).

GO:

id name namespace
GO:0010874 regulation of cholesterol efflux biological_process
GO:0033700 phospholipid efflux biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0090554 phosphatidylcholine floppase activity molecular_function
GO:0090556 phosphatidylserine floppase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-12 Predicted to enable ATPase-coupled transmembrane transporter activity; phosphatidylcholine floppase activity; and phosphatidylserine floppase activity. Acts upstream of or within regulation of cholesterol efflux and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including blood vessel; central nervous system; neural tube; pleuroperitoneal region; and segmental plate. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; hypolipoproteinemia (multiple); obesity; and type 2 diabetes mellitus. Orthologous to human ABCA1 (ATP binding cassette subfamily A member 1).

Ensembl:

ensembl_id ENSDARG00000074635

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001142 False 9626 mRNA 0.49 50 52560549 52628407
TCONS_00001143 False 697 lncRNA 0.37 2 52563268 52565950
TCONS_00001144 True 9428 mRNA 0.49 49 52563298 52628407

Neighbor

gene id symbol gene type direction distance location
XLOC_000674 tacr3l coding upstream 22032 52518176 ~ 52538517 (+)
XLOC_000673 BX323839.1 coding upstream 49793 52495043 ~ 52510756 (+)
XLOC_000672 cldnd1b coding upstream 73554 52481332 ~ 52486995 (+)
XLOC_000671 glb1 coding upstream 81803 52462068 ~ 52478746 (+)
XLOC_000670 si:ch211-217k17.9 coding upstream 159889 52398205 ~ 52400660 (+)
XLOC_000676 slc44a1a coding downstream 4449 52632856 ~ 52652163 (+)
XLOC_000677 osbp coding downstream 33796 52662203 ~ 52699063 (+)
XLOC_000678 CABZ01021532.1 coding downstream 107077 52735484 ~ 52736125 (+)
XLOC_000679 wu:fc75a09 coding downstream 125678 52754085 ~ 52763447 (+)
XLOC_000680 smarca5 coding downstream 164032 52792439 ~ 52820954 (+)
XLOC_000667 NA non-coding upstream 192351 52363402 ~ 52368198 (+)
XLOC_000668 NA non-coding upstream 192972 52365030 ~ 52367577 (+)
XLOC_000666 LO017718.1 non-coding upstream 197442 52353162 ~ 52363107 (+)
XLOC_000665 NA non-coding upstream 213650 52345955 ~ 52346899 (+)
XLOC_000681 NA non-coding downstream 179225 52807632 ~ 52807843 (+)
XLOC_000684 NA non-coding downstream 637993 53266400 ~ 53278288 (+)
XLOC_000686 NA non-coding downstream 691752 53320159 ~ 53320674 (+)
XLOC_000687 NA non-coding downstream 692524 53320931 ~ 53321338 (+)
XLOC_000689 AL935166.1 non-coding downstream 736103 53364510 ~ 53368034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000302_00045349_00078600 ABCA1A, ABCA1 coding CI01000302 null 45349 ~ 78600 (+)
bowfin (Amia calva) AMCG00017803 abca1b coding CM030131.1 CM030131.1 23713943 ~ 23748256 (+)