LOC122362527


Basic Information

Item Value
gene id LOC122362527
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16736723 ~ 16739370 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006253127.1
AACTCATAATGGACTCCTGGATTGGGCTGCTGGTAGATCATCTGAGAGAGACATGAGACAGCAGATCTTTTTGAGGTTTACCTGGATCATCCTAAACATCTGTCCATATCCTCAAACATACTGCAGCTAACAGTGACATAATATTGAGTTGGGATGGACGTGTTTGAGGCGTCACTCACAAACACGTCCAGGATCTCGTTGGTGGGCCCCTCGGCCAGGAAGGACTCTCCTGCGGTGCTGCTGATCTCATTGGGCCGCCGGTAGTTCCTGCTCTTCACCATCTCGGTGACGTTGATCTTGGTGGCTCCCGCCGGGATCTCCACAATCTTGTGATAGCCCACTTTGGACAGACTGTGCTGGAACAGGCCGGAGACGAGCTTACACGCACTGTTATCCCc

Function

GO:

id name namespace
GO:0042440 pigment metabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0042168 heme metabolic process biological_process
GO:0046148 pigment biosynthetic process biological_process
GO:0033013 tetrapyrrole metabolic process biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0006778 porphyrin-containing compound metabolic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0005215 transporter activity molecular_function
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006253127.1 True 398 lncRNA 0.52 3 16736723 16739370

Neighbor

gene id symbol gene type direction distance location
myef2 myef2,LOC107698879,LOC107739991,LOC107568149 coding upstream 18565 16705581 ~ 16718158 (+)
fbn1 fbn1,LOC107713176,LOC107595388,LOC102779271 coding upstream 58657 16618170 ~ 16678066 (+)
secisbp2l secisbp2l,LOC107573840,LOC107740797,LOC107713195,LOC106587693,LOC107698883 coding upstream 126597 16592589 ~ 16610126 (+)
LOC122323202 nnt2,LOC108412674 coding upstream 186006 16536459 ~ 16550717 (+)
slc30a4 slc30a4 coding upstream 214040 16514170 ~ 16522683 (+)
larp6a larp6,LOC107712978,LOC107595350,LOC107739963,LOC107576037,LOC103354325 coding downstream 41312 16780682 ~ 16789673 (+)
ulk3 ulk3,LOC107665498,LOC107681021,LOC107595383 coding downstream 79917 16819287 ~ 16829354 (+)
LOC122363001 NA coding downstream 219454 16958824 ~ 16971364 (+)
LOC122362752 LOC107665215,LOC107595393 coding downstream 327724 17067094 ~ 17069819 (+)
LOC122362967 NA coding downstream 339689 17079059 ~ 17099562 (+)
G126815 slc24a5 non-coding upstream 13249 16723216 ~ 16723474 (+)
G126813 slc24a5 non-coding upstream 16593 16719496 ~ 16720130 (+)
G126792 NA non-coding upstream 63417 16672536 ~ 16673306 (+)
G126786 NA non-coding upstream 125248 16611181 ~ 16611475 (+)
G126771 NA non-coding upstream 163193 16556719 ~ 16573530 (+)
G126794 NA non-coding downstream 7319 16746689 ~ 16863742 (+)
G126826 NA non-coding downstream 63402 16802772 ~ 16803493 (+)
G126797 NA non-coding downstream 95919 16835289 ~ 16873985 (+)
G126854 NA non-coding downstream 197731 16937101 ~ 16937486 (+)
G126856 NA non-coding downstream 203449 16942819 ~ 16943240 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 465456 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 681096 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 783070 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1688830 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1826566 14906616 ~ 14910157 (+)
G126820 NA other downstream 14339 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 334824 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 390552 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 564399 17303769 ~ 17309158 (+)
G127098 NA other downstream 671315 17410685 ~ 17411593 (+)

Expression


Co-expression Network