LOC122362848


Basic Information

Item Value
gene id LOC122362848
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16376438 ~ 16378666 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006253168.1
AACATACaatcaacaacataaaaataaaaaagagtaataaaaaaataaaacaagtgtgTTTAGAGTGTAAACAAATAAAGGAGTGGGATTAATACattacaaactttaaaaaaagtggaGACTTACATTCCTTCAGAAGAGGAAAAGAGTCACAGACAGAGAGTCTCCTGGCCCTCGTCACACTTCCTGTGCTGTTCTTAATGAATTGAAATGTGACCCCGGAGCACAGAACCAGTCATAAAGGTCCATTTTCATGAAatagatttatacataatcttggctgagatacaactatttgaaaatacataaatgaaaatcacctttaaagatACCACAATGAAGCACTTAGCCatgaatattacaaattaaaaatgtttgaaataactattaaaaaaaagttttgaaatatttattttttaaatcgacaaaatatcttcaagttaatatcctaatgatttctgggacatttttacaatgaattgttgtctattgctataaatattcCTGTGGGGGTCGTTTATGTACTGTGAAAAGAATCACAGAAACCCAAGCAGAGACGCTTCTGCAGCTTGAAGACTTGATCAACCTCTTTCAGTTTAGATAACAACTTGATTTCTCTTCATACTGGAGCTCAAAAACCACAGGACTGATCTGAAGATGATAATGAAACACAACCAACATAAGAAGCCCAAAACAGCTCTCGAtcggtttgatgaacatgaaacgGTGCAATGAACCACAGGAGCAGTTCTGATCTTCACATCTACAAACCAATCCATCAGTCTTCTACAAGTCACTGAAACCAAACACTTCTTCTCACCCGGAGTTCGGTGTTATTTCGTGACAATCGAGCACACATCGTCACCCGAGGCTCACCTGgacattagttttattattgtagtttcatttattattgtagttctgctttacaataaaaaatagctttttttttattaaatcaaaaaggGCAGTACAACAAATACTACAATGATGTAGAAAtactttacaatttaaataattcctTTTGACATTACAGATGAGAATTTAAAGAGGAATTTGAAGAAGAGGTAATTCATCATGAAAGTAATGTCAcgacgcaaaaaaaaaaaagaaatcataatggtcctaaatacaaaatataatctCATTCTTTCGTTTGGGAGCGCAGCGCGGCCGGGCTGAAGACGCTGGTCTGTGGCGTGATTCGGAGGAAGATGATCGAAGGAAGTGCTGGTGGGACGCTTCAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006253168.1 True 1251 lncRNA 0.35 2 16376438 16378666

Neighbor

gene id symbol gene type direction distance location
LOC122362844 fsd2,LOC107726333 coding upstream 7628 16362245 ~ 16368810 (+)
homer2 homer2,LOC107569981,LOC107595365,LOC107703939,LOC108414443 coding upstream 27533 16338045 ~ 16348905 (+)
hdgfl3 LOC107726337,LOC107595369,LOC107665298,LOC107703942,LOC107754858 coding upstream 41978 16329709 ~ 16334460 (+)
LOC122323208 hebp2,LOC107726446,LOC107693223,LOC107732635,LOC107602836,LOC107549119,LOC107696074 coding upstream 257676 16115991 ~ 16118762 (+)
LOC122362747 kifc3,LOC107670565 coding upstream 260594 16090090 ~ 16115844 (+)
zgc:158482 LOC107727401,LOC107703947,LOC107569985 coding downstream 32699 16411365 ~ 16419019 (+)
slc27a2a NA coding downstream 41528 16420194 ~ 16426174 (+)
usp8 usp8,LOC107595392,LOC107715249,LOC107665382 coding downstream 63814 16442480 ~ 16452118 (+)
mibp2 mibp2,LOC107713061,LOC107690135,LOC107710817,LOC107663471,LOC107595359,LOC107595360,LOC107097782,LOC107381735 coding downstream 123268 16501934 ~ 16504465 (+)
slc30a4 slc30a4 coding downstream 135504 16514170 ~ 16522683 (+)
G126716 homer2,LOC107569981,LOC107703939,LOC107595365 non-coding upstream 12233 16267014 ~ 16364205 (+)
G126722 whamm,LOC107595364 non-coding upstream 14792 16355231 ~ 16361646 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding upstream 164855 16208584 ~ 16211583 (+)
LOC122362955 NA non-coding upstream 317464 16058534 ~ 16058974 (+)
G126626 NA non-coding upstream 372620 15999452 ~ 16003818 (+)
G126743 gatm,LOC107726335,LOC107665388 non-coding downstream 26789 16405455 ~ 16406624 (+)
G126723 NA non-coding downstream 75331 16453997 ~ 16494634 (+)
G126755 NA non-coding downstream 84126 16462792 ~ 16463512 (+)
G126726 NA non-coding downstream 112867 16491533 ~ 16493553 (+)
G126779 NA non-coding downstream 130957 16509623 ~ 16525107 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other upstream 105171 16263839 ~ 16271267 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other upstream 320811 16047069 ~ 16055627 (+)
LOC122362954 LOC107740354 other upstream 422785 15950982 ~ 15953653 (+)
LOC122362588 NA other upstream 1328545 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 1466281 14906616 ~ 14910157 (+)
G126820 NA other downstream 375043 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 695528 17074194 ~ 17077159 (+)
LOC122362575 NA other downstream 751256 17129922 ~ 17171335 (+)
LOC122322904 NA other downstream 925103 17303769 ~ 17309158 (+)
G127098 NA other downstream 1032019 17410685 ~ 17411593 (+)

Expression


Co-expression Network