serinc2 (serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775)


Basic Information

Item Value
gene id serinc2
gene name serinc2,LOC107732928,LOC107689546,LOC107687316,LOC107708726,LOC108272915,LOC103358775
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2889623 ~ 2893601 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU191940
TGGGTCCTTCGTCTTCATTCTGATCCAGCTCATTCTTCTGGTGGATTTTGCTCACACCTGGAATCAGAAGTGGGTGAAGAAGGCGGAGGAAGGGAACAGTAAATGCTGGTATGCAGCCCTGCTGTCGTTCACACTGGTGCACTATATCTGTGCCTTCGCCGCTGTGGTTTTGTTCTACGTCTTCTACACACAGCCGGACGACTGCGCCGAGCACAAAGCCTTCATCAGCCTCAACTTCATCTTCTGCATCATTGTGTCCGTGGTGGCTATTCTTCCAAAAGTGCAGGTCAT
>TU191942
TCTTAGTTTCTGTGTTGTGTCCGTCATCATGGGTGCCTGCATGGCCTTGTGCTCGCTGGCGAGCTGCGCATCTTGTCTGTGCGGCTCCGCTCCATGTCTTTTATCGGGATGCTGTCCTTCTACATATAACTCCACCGTGACCCGCCTGGCCTTCTCCTTCTTCCTTCTGCTGGGCACTATAGTGTCCATCATCATGATCCTGCCCGGCAtggagacacagctgaagaagATTCCTGGTTTTTGCGAAGGAGGCTCTTCTATACCTGGATTTGAAGGGAAGGTGAACTGTGACATCATTGTTGGCTATAAGTCGGTCTACAGGATGTGCTTCGCCATGGCCtgcttcttcttcctcttctccaTCATCATGATCCGCGTGAGAAGCAGCAAGGATCCGCNNNNNNNNNNTCAGAAGTGGGTGAAGAAGGCGGAGGAAGGGAACAGTAAATGCTGGTATGCAGCCCTGCTGTCGTTCACACTGGTGCACTATATCTGTGCCTTCGCCGCTGTGGTTTTGTTCTACGTCTTCTACACACAGCCGGACGACTGCGCCGAGCACAAAGCCTTCATCAGCCTCAACTTCATCTTCTGCATCATTGTGTCCGTGGTGGCTATTCTTCCAAAAGTGCAGGTCAT
>XM_043217923.1
TCGTTGCTCACGTTTCAGAGTTTAATAAACTCGAATTCGGTGGAAAGATTGACTTCCGTGTGTTTTTCTTAGTTTCTGTGTTGTGTCCGTCATCATGGGTGCCTGCATGGCCTTGTGCTCGCTGGCGAGCTGCGCATCTTGTCTGTGCGGCTCCGCTCCATGTCTTTTATCGGGATGCTGTCCTTCTACATATAACTCCACCGTGACCCGCCTGGCCTTCTCCTTCTTCCTTCTGCTGGGCACTATAGTGTCCATCATCATGATCCTGCCCGGCAtggagacacagctgaagaagATTCCTGGTTTTTGCGAAGGAGGCTCTTCTATACCTGGATTTGAAGGGAAGGTGAACTGTGACATCATTGTTGGCTATAAGTCGGTCTACAGGATGTGCTTCGCCATGGCCtgcttcttcttcctcttctccaTCATCATGATCCGCGTGAGAAGCAGCAAGGATCCCAAGGATCCGCGAGCCGCCATTCAGAACGGTTTCTGGTTCTTCAAGTTCTTGATTCTGGTCGCTCTTACGGTGGGAGCTTTCTTCATTCCAGATGGAGCGTTCAACACNNNNNNNNNNNNNNNNNNNNNNNNTGGGTCCTTCGTCTTCATTCTGATCCAGCTCATTCTTCTGGTGGATTTTGCTCACACCTGGAATCAGAAGTGGGTGAAGAAGGCGGAGGAAGGGAACAGTAAATGCTGGTATGCAGCCCTGCTGTCGTTCACACTGGTGCACTATATCTGTGCCTTCGCCGCTGTGGTTTTGTTCTACGTCTTCTACACACAGCCGGACGACTGCGCCGAGCACAAAGCCTTCATCAGCCTCAACTTCATCTTCTGCATCATTGTGTCCGTGGTGGCTATTCTTCCAAAAGTGCAGGTCATTTCCACACTCATTTGCTTCGCTCGTTTACCCGCTTTTTTCTCGAATGCATGTAAACCATACAAAGCACGAGTCTGTCAGAACGTGAACGTTTGCATGCCGTCGGATCTC

Function

symbol description
serinc2 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in EVL; ectoderm; notochord; peripheral olfactory organ; and pronephric duct. Orthologous to human SERINC2 (serine incorporator 2).

NR:

description
serine incorporator 1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191940 False 291 lncRNA 0.51 2 2892904 2893492
TU191942 False 636 TUCP 0.51 5 2889689 2893492
XM_043217923.1 True 994 mRNA 0.49 7 2889623 2893601

Neighbor

gene id symbol gene type direction distance location
ptprua ptprua,LOC107732911,LOC108272369 coding upstream 325067 2380621 ~ 2564556 (+)
gmeb1 gmeb1,LOC107556889,LOC107595901,LOC107708700 coding upstream 548500 2331733 ~ 2341123 (+)
LOC122324256 NA coding upstream 559347 2330141 ~ 2330276 (+)
rab42a rab42a,LOC108414691,LOC103028730,LOC107732921,LOC107689573,LOC107708721,LOC107595911,LOC107556890,LOC107675932 coding upstream 561742 2322401 ~ 2327881 (+)
ctps1a ctps1a,ctps1,LOC107708718,LOC107689550,LOC108415321 coding upstream 571590 2311270 ~ 2318033 (+)
hivep3a hivep3a,LOC107708727,LOC107687396,LOC107689544,LOC107732924,LOC107595896,LOC107569862,LOC107732908 coding downstream 943 2894544 ~ 2914709 (+)
edn2 NA coding downstream 25767 2919368 ~ 2922019 (+)
LOC122323611 NA coding downstream 256476 3150077 ~ 3163642 (+)
tbxta ta,LOC107700831,LOC107689566,LOC108411273,LOC104926085 coding downstream 592901 3486502 ~ 3491224 (+)
nr0b2b NA coding downstream 610508 3504109 ~ 3508711 (+)
G129979 NA non-coding upstream 103796 2754024 ~ 2785827 (+)
G129974 NA non-coding upstream 155440 2728465 ~ 2734183 (+)
G129947 NA non-coding upstream 510268 2379083 ~ 2379355 (+)
G129942 NA non-coding upstream 538058 2351298 ~ 2351565 (+)
G129936 NA non-coding upstream 546384 2343035 ~ 2343239 (+)
G130015 NA non-coding downstream 22344 2915945 ~ 2916411 (+)
G130017 NA non-coding downstream 28564 2922165 ~ 2922620 (+)
G130020 NA non-coding downstream 33687 2927288 ~ 2927504 (+)
G130022 NA non-coding downstream 36826 2930427 ~ 2934447 (+)
LOC122323349 NA non-coding downstream 92941 2986542 ~ 3045884 (+)
LOC122323290 NA other upstream 1995 2885413 ~ 2887628 (+)
G129993 NA other upstream 103275 2785925 ~ 2786348 (+)
ppp1r8a ppp1r8a,LOC107690919,LOC107732917,LOC107708698,LOC108441741,LOC108272406,LOC105903676 other upstream 748291 2134652 ~ 2141332 (+)
LOC122323678 NA other upstream 916239 1966740 ~ 1973384 (+)
thrb thrb,LOC107743925,LOC107719848,LOC107700654,LOC106588669 other upstream 923933 1870158 ~ 1965690 (+)
phactr4a phactr4a,LOC107550657,LOC107687470,LOC107595895,LOC107689543 other downstream 65992 2959593 ~ 2978416 (+)
G130077 NA other downstream 199466 3093067 ~ 3093714 (+)
sh3bgrl3 sh3bgrl3,LOC107700758,LOC107689536,LOC106570239,LOC105933927,LOC103368842 other downstream 678661 3572262 ~ 3576193 (+)
G130208 LOC107714468,LOC107559403,LOC107569308 other downstream 866266 3759867 ~ 3760985 (+)
G130372 mc5ra,LOC107746932,LOC107552309,LOC107675655,LOC107754914,LOC107566557 other downstream 1351167 4244768 ~ 4259085 (+)

Expression


Co-expression Network